Wall clock time and date at job start Mon Mar 30 2020 05:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42901 * 109.47054 * 2 1 4 4 C 1.42902 * 113.99954 * 179.97438 * 3 2 1 5 5 H 1.08992 * 113.00491 * 18.14564 * 4 3 2 6 6 C 1.53967 * 114.05203 * 246.10806 * 4 3 2 7 7 C 1.51403 * 87.30723 * 271.65890 * 6 4 3 8 8 N 1.28006 * 136.31530 * 154.04981 * 7 6 4 9 9 N 1.40097 * 120.00090 * 359.63016 * 8 7 6 10 10 C 1.46505 * 119.99946 * 180.02562 * 9 8 7 11 11 H 1.09001 * 109.47050 * 29.99458 * 10 9 8 12 12 C 1.53002 * 109.46742 * 269.99499 * 10 9 8 13 13 C 1.50704 * 109.46953 * 149.99747 * 10 9 8 14 14 H 1.07997 * 120.00516 * 35.00145 * 13 10 9 15 15 C 1.37878 * 119.99798 * 214.99861 * 13 10 9 16 16 N 1.31508 * 120.00170 * 184.91555 * 15 13 10 17 17 Si 1.86807 * 119.99876 * 4.91681 * 15 13 10 18 18 H 1.48503 * 109.47044 * 84.83582 * 17 15 13 19 19 H 1.48503 * 109.47110 * 204.83208 * 17 15 13 20 20 H 1.48499 * 109.47347 * 324.83521 * 17 15 13 21 21 C 1.51408 * 87.36627 * 333.78786 * 7 6 4 22 22 H 1.08996 * 113.56528 * 271.63244 * 21 7 6 23 23 S 1.81404 * 113.55917 * 140.96762 * 21 7 6 24 24 C 1.81398 * 102.99778 * 84.50653 * 23 21 7 25 25 H 1.08996 * 109.46872 * 60.00450 * 1 2 3 26 26 H 1.09004 * 109.47196 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46882 * 300.00177 * 1 2 3 28 28 H 1.08996 * 109.47432 * 240.00073 * 2 1 3 29 29 H 1.09004 * 109.47216 * 119.99405 * 2 1 3 30 30 H 1.09003 * 113.55655 * 157.07459 * 6 4 3 31 31 H 1.08999 * 113.65707 * 26.25963 * 6 4 3 32 32 H 0.96998 * 119.99980 * 359.97438 * 9 8 7 33 33 H 1.09006 * 109.46837 * 175.02864 * 12 10 9 34 34 H 1.09000 * 109.46990 * 55.02883 * 12 10 9 35 35 H 1.08994 * 109.47058 * 295.02684 * 12 10 9 36 36 H 0.97003 * 119.99870 * 179.97438 * 16 15 13 37 37 H 1.09000 * 109.47165 * 60.00485 * 24 23 21 38 38 H 1.08997 * 109.47001 * 180.02562 * 24 23 21 39 39 H 1.08996 * 109.47499 * 299.99849 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9309 0.5433 -0.3115 6 6 4.0109 2.0775 1.2862 7 6 3.8348 3.4308 0.6306 8 7 3.6663 4.6364 1.0266 9 7 3.6034 4.9213 2.3969 10 6 3.4099 6.3010 2.8501 11 1 2.8311 6.8497 2.1071 12 6 4.7721 6.9731 3.0337 13 6 2.6696 6.2993 4.1627 14 1 2.8454 5.5122 4.8810 15 6 1.7677 7.3029 4.4467 16 7 1.1939 7.3561 5.6288 17 14 1.3609 8.5869 3.1523 18 1 0.2925 8.0692 2.2602 19 1 0.8917 9.8289 3.8175 20 1 2.5751 8.8832 2.3503 21 6 3.9539 2.7227 -0.7023 22 1 4.9805 2.6305 -1.0566 23 16 2.8279 3.3686 -1.9696 24 6 3.7430 4.7807 -2.6470 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 5.0530 1.8124 1.4652 31 1 3.3806 1.9332 2.1637 32 1 3.6872 4.2049 3.0455 33 1 4.6278 8.0239 3.2851 34 1 5.3429 6.8960 2.1083 35 1 5.3159 6.4784 3.8384 36 1 0.5596 8.0623 5.8287 37 1 4.6887 4.4345 -3.0641 38 1 3.1518 5.2546 -3.4306 39 1 3.9382 5.5018 -1.8533 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807979484.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:45 Heat of formation + Delta-G solvation = 1.085779 kcal Electronic energy + Delta-G solvation = -19008.353132 eV Core-core repulsion = 16078.567444 eV Total energy + Delta-G solvation = -2929.785688 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.54904 -38.08436 -36.84514 -34.85124 -33.17700 -31.62274 -29.73148 -28.80109 -27.28685 -26.92515 -23.77463 -23.53618 -22.05321 -20.36089 -19.02298 -18.15226 -17.81087 -17.03171 -16.54844 -16.09932 -15.70200 -15.49062 -15.08685 -14.75447 -14.54589 -14.35486 -14.26896 -14.05947 -13.79344 -13.74473 -13.14630 -13.02036 -12.85570 -12.78420 -12.58660 -12.42927 -12.07179 -11.91480 -11.84702 -11.79417 -11.26724 -11.00305 -10.83027 -10.49079 -10.39100 -8.62548 -8.44385 -8.39452 -6.45987 0.72137 1.29370 1.33164 1.42719 1.54215 1.85897 2.01657 2.26932 2.61318 3.01113 3.36624 3.46461 4.03156 4.15953 4.23930 4.26117 4.36662 4.39025 4.39728 4.44559 4.55101 4.58133 4.73831 4.77864 4.85555 4.88667 4.94357 4.97071 5.07135 5.07997 5.29659 5.40811 5.50057 5.78060 6.17222 6.36720 6.54252 6.65508 7.22329 7.84313 8.76275 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.017010 B = 0.005190 C = 0.004745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.723615 B = 5393.595160 C = 5899.320016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.382 6.382 4 C 0.111 3.889 5 H 0.135 0.865 6 C -0.136 4.136 7 C -0.003 4.003 8 N -0.225 5.225 9 N -0.645 5.645 10 C 0.275 3.725 11 H 0.027 0.973 12 C -0.140 4.140 13 C -0.527 4.527 14 H 0.041 0.959 15 C 0.028 3.972 16 N -0.935 5.935 17 Si 0.937 3.063 18 H -0.277 1.277 19 H -0.276 1.276 20 H -0.245 1.245 21 C 0.001 3.999 22 H 0.157 0.843 23 S -0.263 6.263 24 C -0.119 4.119 25 H 0.053 0.947 26 H 0.095 0.905 27 H 0.043 0.957 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.135 0.865 31 H 0.064 0.936 32 H 0.370 0.630 33 H 0.049 0.951 34 H 0.042 0.958 35 H 0.046 0.954 36 H 0.271 0.729 37 H 0.095 0.905 38 H 0.106 0.894 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.949 -14.664 -16.515 23.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.025 4.025 3 O -0.301 6.301 4 C 0.050 3.950 5 H 0.153 0.847 6 C -0.178 4.178 7 C -0.202 4.202 8 N -0.030 5.030 9 N -0.382 5.382 10 C 0.171 3.829 11 H 0.045 0.955 12 C -0.200 4.200 13 C -0.566 4.566 14 H 0.059 0.941 15 C -0.172 4.172 16 N -0.574 5.574 17 Si 0.761 3.239 18 H -0.203 1.203 19 H -0.201 1.201 20 H -0.169 1.169 21 C -0.130 4.130 22 H 0.175 0.825 23 S -0.035 6.035 24 C -0.288 4.288 25 H 0.072 0.928 26 H 0.114 0.886 27 H 0.062 0.938 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.153 0.847 31 H 0.083 0.917 32 H 0.206 0.794 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.114 0.886 38 H 0.125 0.875 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.535 -13.572 -17.002 22.448 hybrid contribution 0.742 0.238 1.162 1.399 sum 6.277 -13.334 -15.840 21.635 Atomic orbital electron populations 1.21760 0.93998 1.03193 1.01930 1.22747 0.95670 0.82606 1.01428 1.88052 1.19620 1.28233 1.94167 1.22587 0.82507 0.96301 0.93590 0.84724 1.23178 1.03408 0.92876 0.98334 1.25511 1.04610 0.90581 0.99509 1.73051 1.10085 1.18758 1.01138 1.48348 1.83750 1.08423 0.97655 1.18571 0.93068 0.79188 0.92094 0.95512 1.22193 0.98166 0.99912 0.99684 1.21248 1.23697 1.10636 1.01064 0.94068 1.25716 0.94665 0.99671 0.97167 1.69999 1.29778 1.34933 1.22692 0.85912 0.79776 0.78729 0.79528 1.20329 1.20119 1.16894 1.24509 1.02497 0.95641 0.90364 0.82534 1.87102 1.33446 1.38050 1.44948 1.23401 1.03641 0.98290 1.03453 0.92778 0.88618 0.93781 0.91098 0.92155 0.84739 0.91691 0.79393 0.93181 0.93873 0.93487 0.92031 0.88590 0.87538 0.91837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 10.28 71.98 0.74 -2.18 16 2 C 0.05 0.96 6.50 71.98 0.47 1.43 16 3 O -0.38 -10.21 9.39 -148.98 -1.40 -11.61 16 4 C 0.11 2.31 4.33 31.14 0.13 2.44 16 5 H 0.14 1.62 7.87 -2.39 -0.02 1.60 16 6 C -0.14 -3.27 7.51 30.26 0.23 -3.04 16 7 C 0.00 -0.11 7.92 46.98 0.37 0.26 16 8 N -0.22 -9.19 11.50 -40.14 -0.46 -9.65 16 9 N -0.65 -29.19 6.09 -172.50 -1.05 -30.24 16 10 C 0.28 13.67 2.89 44.25 0.13 13.80 16 11 H 0.03 1.40 5.29 -2.39 -0.01 1.39 16 12 C -0.14 -6.12 9.50 71.98 0.68 -5.43 16 13 C -0.53 -30.42 9.08 25.60 0.23 -30.19 16 14 H 0.04 2.59 8.06 -2.91 -0.02 2.57 16 15 C 0.03 1.62 5.47 84.66 0.46 2.08 16 16 N -0.94 -57.99 13.96 21.45 0.30 -57.69 16 17 Si 0.94 45.52 26.99 68.60 1.85 47.37 16 18 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 19 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 20 H -0.25 -11.15 6.82 99.48 0.68 -10.47 16 21 C 0.00 0.02 4.14 30.16 0.12 0.15 16 22 H 0.16 2.60 8.14 -2.39 -0.02 2.58 16 23 S -0.26 -7.30 21.43 -56.49 -1.21 -8.51 16 24 C -0.12 -2.70 10.76 113.37 1.22 -1.48 16 25 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.10 1.27 8.14 -2.39 -0.02 1.26 16 27 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 28 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16 29 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.13 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.37 16.28 8.36 -213.32 -1.78 14.50 16 33 H 0.05 2.14 8.14 -2.38 -0.02 2.13 16 34 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 37 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -71.87 340.64 2.03 -69.83 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: -0.79 Total: 22.66 kcal Atomic # 6 Polarization: -26.95 SS G_CDS: 4.79 Total: -22.15 kcal Atomic # 7 Polarization: -96.37 SS G_CDS: -1.21 Total: -97.59 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: -1.40 Total: -11.61 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.85 Total: 47.37 kcal Atomic # 16 Polarization: -7.30 SS G_CDS: -1.21 Total: -8.51 kcal Total: -71.87 2.03 -69.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807979484.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.919 kcal (2) G-P(sol) polarization free energy of solvation -71.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds