Wall clock time and date at job start Mon Mar 30 2020 05:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42891 * 109.47545 * 2 1 4 4 C 1.42898 * 114.00301 * 180.02562 * 3 2 1 5 5 H 1.09002 * 113.09132 * 18.05564 * 4 3 2 6 6 C 1.53972 * 114.05126 * 246.11691 * 4 3 2 7 7 C 1.51406 * 87.30321 * 271.64872 * 6 4 3 8 8 N 1.28008 * 136.31931 * 154.04052 * 7 6 4 9 9 N 1.40100 * 119.99748 * 359.63611 * 8 7 6 10 10 C 1.46501 * 119.99777 * 179.97438 * 9 8 7 11 11 H 1.08998 * 109.47133 * 329.99470 * 10 9 8 12 12 C 1.52999 * 109.47345 * 90.00266 * 10 9 8 13 13 C 1.50703 * 109.46807 * 210.00188 * 10 9 8 14 14 H 1.08007 * 119.99608 * 265.52401 * 13 10 9 15 15 C 1.37874 * 120.00301 * 85.53177 * 13 10 9 16 16 N 1.31520 * 119.99840 * 353.26754 * 15 13 10 17 17 Si 1.86801 * 120.00272 * 173.27246 * 15 13 10 18 18 H 1.48505 * 109.46983 * 59.99422 * 17 15 13 19 19 H 1.48495 * 109.47195 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46866 * 300.00130 * 17 15 13 21 21 C 1.51408 * 87.36393 * 333.78946 * 7 6 4 22 22 H 1.09002 * 113.55983 * 140.89307 * 21 7 6 23 23 S 1.81394 * 113.56117 * 271.62556 * 21 7 6 24 24 C 1.81399 * 103.00206 * 275.49714 * 23 21 7 25 25 H 1.08992 * 109.47540 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46542 * 300.00171 * 1 2 3 27 27 H 1.09000 * 109.47046 * 59.99242 * 1 2 3 28 28 H 1.09003 * 109.46542 * 239.99829 * 2 1 3 29 29 H 1.09000 * 109.47046 * 120.00758 * 2 1 3 30 30 H 1.08997 * 113.55871 * 157.06693 * 6 4 3 31 31 H 1.08996 * 113.65662 * 26.24431 * 6 4 3 32 32 H 0.96996 * 120.00191 * 359.97438 * 9 8 7 33 33 H 1.08997 * 109.47329 * 57.26688 * 12 10 9 34 34 H 1.08997 * 109.47001 * 177.27307 * 12 10 9 35 35 H 1.09009 * 109.46665 * 297.26583 * 12 10 9 36 36 H 0.96994 * 119.99549 * 354.59033 * 16 15 13 37 37 H 1.09008 * 109.46809 * 300.00057 * 24 23 21 38 38 H 1.09001 * 109.47218 * 59.99683 * 24 23 21 39 39 H 1.09002 * 109.47633 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.9322 0.5434 -0.3117 6 6 4.0121 2.0768 1.2849 7 6 3.8357 3.4304 0.6299 8 7 3.6675 4.6358 1.0263 9 7 3.6056 4.9203 2.3967 10 6 3.4136 6.3000 2.8505 11 1 3.8534 6.9853 2.1259 12 6 1.9172 6.5896 2.9835 13 6 4.0822 6.4864 4.1881 14 1 3.5113 6.3720 5.0978 15 6 5.4227 6.8031 4.2507 16 7 6.1480 6.8127 3.1537 17 14 6.2086 7.2185 5.8937 18 1 6.0696 6.0623 6.8152 19 1 7.6486 7.5196 5.6915 20 1 5.5322 8.4032 6.4805 21 6 3.9535 2.7226 -0.7034 22 1 3.2755 3.1101 -1.4638 23 16 5.6616 2.5692 -1.2944 24 6 5.9517 4.1577 -2.1210 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5140 -0.8899 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5140 0.8899 30 1 5.0542 1.8115 1.4629 31 1 3.3824 1.9323 2.1628 32 1 3.6898 4.2038 3.0451 33 1 1.4682 5.8733 3.6715 34 1 1.7754 7.5999 3.3673 35 1 1.4420 6.5021 2.0064 36 1 5.7604 6.5215 2.3136 37 1 5.2363 4.2799 -2.9344 38 1 5.8279 4.9687 -1.4033 39 1 6.9648 4.1788 -2.5225 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807979485.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:48 Heat of formation + Delta-G solvation = 11.038725 kcal Electronic energy + Delta-G solvation = -19032.627308 eV Core-core repulsion = 16103.273211 eV Total energy + Delta-G solvation = -2929.354096 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.35452 -36.69951 -35.36156 -33.04259 -31.11002 -30.53336 -28.79691 -27.03314 -25.63871 -24.61875 -22.97426 -22.35753 -20.66918 -18.69711 -17.32552 -16.74450 -16.40072 -15.73685 -15.40408 -14.32128 -14.26224 -14.18997 -13.82024 -13.43104 -13.33519 -13.31891 -12.93566 -12.55894 -12.36260 -12.10547 -11.94195 -11.65925 -11.23299 -11.11979 -11.03582 -10.86585 -10.85355 -10.70695 -10.20697 -10.06110 -9.67187 -9.47115 -9.14903 -8.66510 -8.62851 -7.52804 -6.70438 -6.49246 -4.33742 1.62192 2.53783 3.34935 3.36298 3.37231 3.57251 3.64765 3.75495 4.42037 4.50752 4.72422 4.95485 5.04130 5.18035 5.22461 5.24503 5.29182 5.36707 5.45856 5.56347 5.76146 5.77277 5.86443 5.93708 5.98085 6.06866 6.17861 6.37145 6.59780 6.65698 6.99995 7.17673 7.21731 7.48846 8.05895 8.29055 8.58930 8.68995 9.47360 9.60612 10.84711 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.016605 B = 0.005129 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.876768 B = 5458.141512 C = 6425.421402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.357 6.357 4 C 0.104 3.896 5 H 0.086 0.914 6 C -0.131 4.131 7 C -0.019 4.019 8 N -0.187 5.187 9 N -0.622 5.622 10 C 0.271 3.729 11 H 0.041 0.959 12 C -0.143 4.143 13 C -0.602 4.602 14 H 0.055 0.945 15 C 0.032 3.968 16 N -0.884 5.884 17 Si 1.068 2.932 18 H -0.287 1.287 19 H -0.281 1.281 20 H -0.285 1.285 21 C -0.008 4.008 22 H 0.099 0.901 23 S -0.223 6.223 24 C -0.118 4.118 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.101 0.899 31 H 0.072 0.928 32 H 0.364 0.636 33 H 0.037 0.963 34 H 0.050 0.950 35 H 0.028 0.972 36 H 0.281 0.719 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.998 -12.303 -8.233 15.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.276 6.276 4 C 0.044 3.956 5 H 0.104 0.896 6 C -0.173 4.173 7 C -0.215 4.215 8 N 0.004 4.996 9 N -0.361 5.361 10 C 0.171 3.829 11 H 0.059 0.941 12 C -0.203 4.203 13 C -0.642 4.642 14 H 0.073 0.927 15 C -0.178 4.178 16 N -0.517 5.517 17 Si 0.895 3.105 18 H -0.213 1.213 19 H -0.206 1.206 20 H -0.211 1.211 21 C -0.139 4.139 22 H 0.117 0.883 23 S 0.003 5.997 24 C -0.287 4.287 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.119 0.881 31 H 0.090 0.910 32 H 0.201 0.799 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.047 0.953 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.105 0.895 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.160 -11.302 -7.744 14.060 hybrid contribution -1.995 -0.678 -0.207 2.117 sum -5.155 -11.980 -7.951 15.275 Atomic orbital electron populations 1.21739 0.93730 1.02076 1.03297 1.22547 0.95565 0.83808 1.00138 1.87942 1.19070 1.26199 1.94371 1.22379 0.81723 0.95413 0.96131 0.89591 1.22992 1.01420 0.95270 0.97575 1.24341 1.10825 0.90327 0.96019 1.73001 1.05983 1.16129 1.04502 1.50311 1.80285 1.09861 0.95609 1.18697 0.90916 0.78817 0.94500 0.94059 1.22139 0.99263 1.00121 0.98742 1.22189 0.97349 1.52661 0.91997 0.92668 1.26015 0.94294 0.93280 1.04208 1.70702 1.39590 1.40698 1.00759 0.83572 0.76325 0.76668 0.73900 1.21303 1.20650 1.21095 1.23492 0.95294 0.97751 0.97392 0.88271 1.86246 1.16689 1.24609 1.72109 1.23378 1.05300 0.97359 1.02672 0.91142 0.91769 0.91848 0.93228 0.93223 0.88078 0.90977 0.79940 0.94384 0.93101 0.95292 0.90794 0.90595 0.89541 0.88177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 10.28 37.16 0.38 -1.02 16 2 C 0.06 0.60 6.50 37.16 0.24 0.84 16 3 O -0.36 -5.23 10.29 -35.23 -0.36 -5.60 16 4 C 0.10 1.49 4.07 -25.89 -0.11 1.38 16 5 H 0.09 1.04 7.84 -51.93 -0.41 0.63 16 6 C -0.13 -2.17 7.22 -27.25 -0.20 -2.37 16 7 C -0.02 -0.36 7.94 -78.23 -0.62 -0.98 16 8 N -0.19 -4.27 11.50 35.93 0.41 -3.86 16 9 N -0.62 -15.06 6.03 -5.88 -0.04 -15.09 16 10 C 0.27 6.94 2.72 -69.08 -0.19 6.75 16 11 H 0.04 1.17 7.14 -51.93 -0.37 0.80 16 12 C -0.14 -3.23 9.50 37.16 0.35 -2.88 16 13 C -0.60 -16.38 8.52 -34.44 -0.29 -16.68 16 14 H 0.06 1.48 7.82 -52.48 -0.41 1.07 16 15 C 0.03 0.88 5.45 -17.82 -0.10 0.79 16 16 N -0.88 -26.27 13.56 55.43 0.75 -25.52 16 17 Si 1.07 24.30 29.91 -169.99 -5.08 19.21 16 18 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 21 C -0.01 -0.13 4.20 -27.41 -0.12 -0.25 16 22 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 23 S -0.22 -3.29 21.80 -107.50 -2.34 -5.64 16 24 C -0.12 -1.58 10.76 101.05 1.09 -0.50 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.10 1.63 8.06 -51.93 -0.42 1.21 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.36 8.73 8.36 -182.60 -1.53 7.20 16 33 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.03 0.62 8.14 -51.92 -0.42 0.19 16 36 H 0.28 8.53 6.93 -40.82 -0.28 8.24 16 37 H 0.08 0.88 8.14 -51.92 -0.42 0.46 16 38 H 0.09 1.36 8.14 -51.92 -0.42 0.94 16 39 H 0.10 1.14 8.14 -51.92 -0.42 0.72 16 LS Contribution 343.55 15.07 5.18 5.18 Total: -1.00 -30.12 343.55 -8.74 -38.87 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -7.71 Total: 7.35 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: 0.45 Total: -14.91 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: 1.13 Total: -44.47 kcal Atomic # 8 Polarization: -5.23 SS G_CDS: -0.36 Total: -5.60 kcal Atomic # 14 Polarization: 24.30 SS G_CDS: -5.08 Total: 19.21 kcal Atomic # 16 Polarization: -3.29 SS G_CDS: -2.34 Total: -5.64 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.12 -8.74 -38.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807979485.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.907 kcal (2) G-P(sol) polarization free energy of solvation -30.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds