Wall clock time and date at job start Mon Mar 30 2020 05:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42891 * 109.47545 * 2 1 4 4 C 1.42898 * 114.00301 * 180.02562 * 3 2 1 5 5 H 1.09002 * 113.09132 * 18.05564 * 4 3 2 6 6 C 1.53972 * 114.05126 * 246.11691 * 4 3 2 7 7 C 1.51406 * 87.30321 * 271.64872 * 6 4 3 8 8 N 1.28008 * 136.31931 * 154.04052 * 7 6 4 9 9 N 1.40100 * 119.99748 * 359.63611 * 8 7 6 10 10 C 1.46501 * 119.99777 * 179.97438 * 9 8 7 11 11 H 1.08998 * 109.47133 * 329.99470 * 10 9 8 12 12 C 1.52999 * 109.47345 * 90.00266 * 10 9 8 13 13 C 1.50703 * 109.46807 * 210.00188 * 10 9 8 14 14 H 1.08007 * 119.99608 * 265.52401 * 13 10 9 15 15 C 1.37874 * 120.00301 * 85.53177 * 13 10 9 16 16 N 1.31520 * 119.99840 * 353.26754 * 15 13 10 17 17 Si 1.86801 * 120.00272 * 173.27246 * 15 13 10 18 18 H 1.48505 * 109.46983 * 59.99422 * 17 15 13 19 19 H 1.48495 * 109.47195 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46866 * 300.00130 * 17 15 13 21 21 C 1.51408 * 87.36393 * 333.78946 * 7 6 4 22 22 H 1.09002 * 113.55983 * 140.89307 * 21 7 6 23 23 S 1.81394 * 113.56117 * 271.62556 * 21 7 6 24 24 C 1.81399 * 103.00206 * 275.49714 * 23 21 7 25 25 H 1.08992 * 109.47540 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46542 * 300.00171 * 1 2 3 27 27 H 1.09000 * 109.47046 * 59.99242 * 1 2 3 28 28 H 1.09003 * 109.46542 * 239.99829 * 2 1 3 29 29 H 1.09000 * 109.47046 * 120.00758 * 2 1 3 30 30 H 1.08997 * 113.55871 * 157.06693 * 6 4 3 31 31 H 1.08996 * 113.65662 * 26.24431 * 6 4 3 32 32 H 0.96996 * 120.00191 * 359.97438 * 9 8 7 33 33 H 1.08997 * 109.47329 * 57.26688 * 12 10 9 34 34 H 1.08997 * 109.47001 * 177.27307 * 12 10 9 35 35 H 1.09009 * 109.46665 * 297.26583 * 12 10 9 36 36 H 0.96994 * 119.99549 * 354.59033 * 16 15 13 37 37 H 1.09008 * 109.46809 * 300.00057 * 24 23 21 38 38 H 1.09001 * 109.47218 * 59.99683 * 24 23 21 39 39 H 1.09002 * 109.47633 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.9322 0.5434 -0.3117 6 6 4.0121 2.0768 1.2849 7 6 3.8357 3.4304 0.6299 8 7 3.6675 4.6358 1.0263 9 7 3.6056 4.9203 2.3967 10 6 3.4136 6.3000 2.8505 11 1 3.8534 6.9853 2.1259 12 6 1.9172 6.5896 2.9835 13 6 4.0822 6.4864 4.1881 14 1 3.5113 6.3720 5.0978 15 6 5.4227 6.8031 4.2507 16 7 6.1480 6.8127 3.1537 17 14 6.2086 7.2185 5.8937 18 1 6.0696 6.0623 6.8152 19 1 7.6486 7.5196 5.6915 20 1 5.5322 8.4032 6.4805 21 6 3.9535 2.7226 -0.7034 22 1 3.2755 3.1101 -1.4638 23 16 5.6616 2.5692 -1.2944 24 6 5.9517 4.1577 -2.1210 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5140 -0.8899 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5140 0.8899 30 1 5.0542 1.8115 1.4629 31 1 3.3824 1.9323 2.1628 32 1 3.6898 4.2038 3.0451 33 1 1.4682 5.8733 3.6715 34 1 1.7754 7.5999 3.3673 35 1 1.4420 6.5021 2.0064 36 1 5.7604 6.5215 2.3136 37 1 5.2363 4.2799 -2.9344 38 1 5.8279 4.9687 -1.4033 39 1 6.9648 4.1788 -2.5225 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807979485.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:47 Heat of formation + Delta-G solvation = -7.681492 kcal Electronic energy + Delta-G solvation = -19033.439077 eV Core-core repulsion = 16103.273211 eV Total energy + Delta-G solvation = -2930.165866 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.62692 -38.15361 -36.99789 -34.82537 -32.79429 -31.66078 -29.91181 -28.76549 -26.98743 -26.69924 -23.85910 -23.63572 -22.58353 -20.22210 -19.17690 -18.11473 -17.76838 -16.79867 -16.60484 -16.02816 -15.73407 -15.60360 -15.41321 -15.18996 -14.62470 -14.43808 -14.27443 -13.97429 -13.53075 -13.27284 -13.13865 -13.08870 -12.90547 -12.68263 -12.56713 -12.47110 -12.10058 -11.98629 -11.94034 -11.75922 -11.16233 -10.85417 -10.71579 -10.57845 -10.53579 -8.76937 -8.73486 -8.42840 -6.53076 0.37457 1.28632 1.53396 1.57958 1.80245 1.85997 2.07912 2.53774 2.60125 3.16966 3.27886 3.41499 3.97120 4.02112 4.18850 4.24638 4.26167 4.28163 4.37865 4.43137 4.49920 4.54889 4.65839 4.71340 4.75930 4.82017 4.83838 4.91055 5.02580 5.12634 5.26088 5.28929 5.62624 6.08438 6.12672 6.21786 6.47860 6.71147 7.37111 7.86557 8.64727 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.016605 B = 0.005129 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.876768 B = 5458.141512 C = 6425.421402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.047 3.953 3 O -0.383 6.383 4 C 0.124 3.876 5 H 0.119 0.881 6 C -0.134 4.134 7 C -0.010 4.010 8 N -0.233 5.233 9 N -0.638 5.638 10 C 0.275 3.725 11 H 0.003 0.997 12 C -0.132 4.132 13 C -0.612 4.612 14 H 0.057 0.943 15 C -0.016 4.016 16 N -0.915 5.915 17 Si 1.118 2.882 18 H -0.270 1.270 19 H -0.287 1.287 20 H -0.266 1.266 21 C -0.011 4.011 22 H 0.101 0.899 23 S -0.210 6.210 24 C -0.119 4.119 25 H 0.097 0.903 26 H 0.049 0.951 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.109 0.891 31 H 0.067 0.933 32 H 0.361 0.639 33 H 0.044 0.956 34 H 0.057 0.943 35 H 0.032 0.968 36 H 0.263 0.737 37 H 0.095 0.905 38 H 0.056 0.944 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.182 -14.330 -8.527 17.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.302 6.302 4 C 0.064 3.936 5 H 0.137 0.863 6 C -0.176 4.176 7 C -0.208 4.208 8 N -0.040 5.040 9 N -0.376 5.376 10 C 0.174 3.826 11 H 0.021 0.979 12 C -0.191 4.191 13 C -0.652 4.652 14 H 0.075 0.925 15 C -0.218 4.218 16 N -0.550 5.550 17 Si 0.938 3.062 18 H -0.195 1.195 19 H -0.212 1.212 20 H -0.191 1.191 21 C -0.142 4.142 22 H 0.119 0.881 23 S 0.017 5.983 24 C -0.288 4.288 25 H 0.116 0.884 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.127 0.873 31 H 0.086 0.914 32 H 0.197 0.803 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.051 0.949 36 H 0.073 0.927 37 H 0.114 0.886 38 H 0.075 0.925 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.379 -13.336 -8.043 15.936 hybrid contribution -1.980 -0.212 -0.294 2.013 sum -5.360 -13.548 -8.337 16.787 Atomic orbital electron populations 1.21776 0.92984 1.03589 1.02371 1.22856 0.96242 0.82141 1.01675 1.87928 1.18989 1.29011 1.94298 1.22274 0.82110 0.95765 0.93487 0.86300 1.23115 1.02126 0.93605 0.98708 1.25342 1.05842 0.90516 0.99128 1.73037 1.09568 1.18166 1.03201 1.49603 1.82618 1.08877 0.96495 1.18471 0.92259 0.78955 0.92950 0.97898 1.21997 0.97266 1.00660 0.99157 1.22448 0.97596 1.52511 0.92660 0.92474 1.27457 0.95248 0.92580 1.06533 1.70833 1.39941 1.43349 1.00832 0.82947 0.75173 0.77702 0.70337 1.19465 1.21218 1.19093 1.23656 0.96764 0.97961 0.95816 0.88071 1.86196 1.15164 1.24991 1.71995 1.23467 1.07388 0.95509 1.02403 0.88417 0.93215 0.92254 0.91026 0.92236 0.87275 0.91398 0.80299 0.93681 0.92354 0.94929 0.92733 0.88618 0.92506 0.85922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 10.28 71.98 0.74 -1.73 16 2 C 0.05 0.87 6.50 71.98 0.47 1.33 16 3 O -0.38 -10.46 10.29 -148.98 -1.53 -11.99 16 4 C 0.12 3.26 4.07 31.14 0.13 3.38 16 5 H 0.12 2.40 7.84 -2.39 -0.02 2.38 16 6 C -0.13 -4.30 7.22 30.26 0.22 -4.09 16 7 C -0.01 -0.40 7.94 46.98 0.37 -0.03 16 8 N -0.23 -10.97 11.50 -40.13 -0.46 -11.43 16 9 N -0.64 -32.03 6.03 -172.52 -1.04 -33.07 16 10 C 0.27 14.64 2.72 44.25 0.12 14.76 16 11 H 0.00 0.18 7.14 -2.39 -0.02 0.16 16 12 C -0.13 -6.01 9.50 71.98 0.68 -5.33 16 13 C -0.61 -34.01 8.52 25.60 0.22 -33.79 16 14 H 0.06 3.08 7.82 -2.91 -0.02 3.06 16 15 C -0.02 -0.87 5.45 84.65 0.46 -0.41 16 16 N -0.92 -56.19 13.56 21.45 0.29 -55.90 16 17 Si 1.12 48.99 29.91 68.60 2.05 51.04 16 18 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 19 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 20 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 21 C -0.01 -0.33 4.20 30.16 0.13 -0.20 16 22 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 23 S -0.21 -5.81 21.80 -56.49 -1.23 -7.04 16 24 C -0.12 -3.05 10.76 113.37 1.22 -1.83 16 25 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 28 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.11 3.37 8.06 -2.39 -0.02 3.35 16 31 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.36 17.91 8.36 -213.32 -1.78 16.13 16 33 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.03 1.42 8.14 -2.38 -0.02 1.40 16 36 H 0.26 16.80 6.93 -92.71 -0.64 16.15 16 37 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -67.20 343.55 2.20 -65.01 By element: Atomic # 1 Polarization: 31.95 SS G_CDS: -0.63 Total: 31.32 kcal Atomic # 6 Polarization: -32.69 SS G_CDS: 4.76 Total: -27.93 kcal Atomic # 7 Polarization: -99.19 SS G_CDS: -1.21 Total: -100.40 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: -1.53 Total: -11.99 kcal Atomic # 14 Polarization: 48.99 SS G_CDS: 2.05 Total: 51.04 kcal Atomic # 16 Polarization: -5.81 SS G_CDS: -1.23 Total: -7.04 kcal Total: -67.20 2.20 -65.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807979485.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.325 kcal (2) G-P(sol) polarization free energy of solvation -67.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds