Wall clock time and date at job start Mon Mar 30 2020 05:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42905 * 109.47091 * 2 1 4 4 C 1.42897 * 113.99486 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46827 * 179.97438 * 4 3 2 6 6 O 1.42899 * 109.47062 * 65.00235 * 5 4 3 7 7 C 1.42904 * 114.00217 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.47098 * 179.97438 * 7 6 5 9 9 O 1.20824 * 120.00159 * 0.02562 * 8 7 6 10 10 O 1.34233 * 119.99694 * 180.02562 * 8 7 6 11 11 C 1.45197 * 116.99870 * 185.11209 * 10 8 7 12 12 C 1.50694 * 112.85395 * 296.95060 * 11 10 8 13 13 H 1.08004 * 120.00062 * 115.13040 * 12 11 10 14 14 C 1.37876 * 120.00010 * 295.40546 * 12 11 10 15 15 N 1.31514 * 119.99717 * 4.94672 * 14 12 11 16 16 Si 1.86795 * 120.00204 * 184.94381 * 14 12 11 17 17 H 1.48500 * 109.47035 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47423 * 120.00208 * 16 14 12 19 19 H 1.48503 * 109.47282 * 240.00150 * 16 14 12 20 20 C 1.53790 * 113.60997 * 68.14645 * 11 10 8 21 21 C 1.53959 * 87.02040 * 89.22709 * 20 11 10 22 22 C 1.53784 * 113.61257 * 165.74817 * 11 10 8 23 23 H 1.08997 * 109.47256 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47257 * 300.00300 * 1 2 3 25 25 H 1.09001 * 109.46993 * 60.00106 * 1 2 3 26 26 H 1.09000 * 109.47257 * 239.99700 * 2 1 3 27 27 H 1.09001 * 109.46993 * 119.99893 * 2 1 3 28 28 H 1.09003 * 109.47539 * 60.00609 * 4 3 2 29 29 H 1.08995 * 109.47646 * 300.00049 * 4 3 2 30 30 H 1.09000 * 109.47357 * 305.00608 * 5 4 3 31 31 H 1.09003 * 109.47492 * 185.00152 * 5 4 3 32 32 H 1.09009 * 109.46885 * 60.00135 * 7 6 5 33 33 H 1.08994 * 109.47071 * 300.00666 * 7 6 5 34 34 H 0.97005 * 119.99699 * 185.00000 * 15 14 12 35 35 H 1.08997 * 113.61029 * 203.75013 * 20 11 10 36 36 H 1.08997 * 113.61306 * 334.65120 * 20 11 10 37 37 H 1.08998 * 113.53460 * 270.81382 * 21 20 11 38 38 H 1.08995 * 113.73992 * 139.93631 * 21 20 11 39 39 H 1.09002 * 113.61224 * 25.35559 * 22 11 10 40 40 H 1.09001 * 113.61223 * 156.16931 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4600 0.0006 5 6 3.8254 2.9383 -0.0001 6 8 3.3976 3.5460 1.2204 7 6 3.7193 4.9346 1.3223 8 6 3.2238 5.4696 2.6411 9 8 2.6541 4.7369 3.4147 10 8 3.4154 6.7603 2.9565 11 6 3.0150 7.1801 4.2875 12 6 1.5342 7.0347 4.5263 13 1 1.1726 6.3358 5.2661 14 6 0.6408 7.7898 3.7965 15 7 1.0737 8.5645 2.8259 16 14 -1.1844 7.7125 4.1863 17 1 -1.4103 6.7736 5.3144 18 1 -1.6677 9.0648 4.5641 19 1 -1.9263 7.2379 2.9906 20 6 3.8815 6.5822 5.4086 21 6 4.7993 7.8071 5.2427 22 6 3.5725 8.5545 4.6936 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.8340 0.9764 -0.8892 29 1 3.8333 0.9766 0.8907 30 1 3.3499 3.4409 -0.8424 31 1 4.9083 3.0253 -0.0893 32 1 3.2419 5.4789 0.5073 33 1 4.8000 5.0627 1.2607 34 1 0.4560 9.1499 2.3605 35 1 3.3782 6.5414 6.3746 36 1 4.3567 5.6395 5.1375 37 1 5.5887 7.6627 4.5051 38 1 5.1693 8.2091 6.1858 39 1 3.7987 9.2017 3.8462 40 1 2.9839 9.0545 5.4628 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810859544.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:30 Heat of formation + Delta-G solvation = -152.952226 kcal Electronic energy + Delta-G solvation = -21614.990215 eV Core-core repulsion = 18203.479315 eV Total energy + Delta-G solvation = -3411.510900 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.38173 -38.39926 -37.42788 -36.39781 -33.96916 -32.29417 -31.88441 -29.57926 -27.43171 -26.23671 -24.54418 -22.82495 -22.63061 -22.47448 -20.38039 -18.13162 -17.20843 -16.93576 -16.73970 -15.89432 -15.64755 -15.57058 -14.85705 -14.64382 -14.44644 -14.23880 -13.65844 -13.44353 -13.15446 -12.60841 -12.58255 -12.00773 -11.77819 -11.51160 -11.45001 -11.31457 -11.21796 -11.08901 -10.89444 -10.83106 -10.39231 -10.07255 -9.95245 -9.90065 -9.63159 -9.48233 -9.14515 -8.73257 -8.45246 -8.32505 -6.03585 -4.13398 3.24034 3.34830 3.40510 3.46270 3.52685 3.63811 4.43956 4.47160 4.93170 4.99799 5.13444 5.19977 5.27126 5.28213 5.35392 5.39317 5.48642 5.59347 5.65387 5.69683 5.74125 5.79509 5.85445 5.87198 6.10352 6.16403 6.43726 6.46330 6.81000 6.85538 7.14888 7.19068 7.27310 7.30550 7.58043 7.85971 7.96558 8.38880 8.89816 9.27568 9.56168 11.01397 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.016574 B = 0.005163 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.989744 B = 5421.937628 C = 6526.651905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.058 3.942 3 O -0.377 6.377 4 C 0.067 3.933 5 C 0.062 3.938 6 O -0.357 6.357 7 C 0.067 3.933 8 C 0.460 3.540 9 O -0.486 6.486 10 O -0.337 6.337 11 C 0.235 3.765 12 C -0.516 4.516 13 H 0.066 0.934 14 C 0.074 3.926 15 N -0.866 5.866 16 Si 0.891 3.109 17 H -0.270 1.270 18 H -0.282 1.282 19 H -0.283 1.283 20 C -0.153 4.153 21 C -0.152 4.152 22 C -0.095 4.095 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.043 0.957 27 H 0.047 0.953 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.261 0.739 35 H 0.081 0.919 36 H 0.050 0.950 37 H 0.068 0.932 38 H 0.053 0.947 39 H 0.063 0.937 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.635 -10.427 -6.823 14.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.297 6.297 4 C -0.010 4.010 5 C -0.015 4.015 6 O -0.275 6.275 7 C -0.011 4.011 8 C 0.300 3.700 9 O -0.373 6.373 10 O -0.254 6.254 11 C 0.201 3.799 12 C -0.553 4.553 13 H 0.084 0.916 14 C -0.131 4.131 15 N -0.504 5.504 16 Si 0.718 3.282 17 H -0.195 1.195 18 H -0.208 1.208 19 H -0.209 1.209 20 C -0.191 4.191 21 C -0.189 4.189 22 C -0.133 4.133 23 H 0.087 0.913 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.070 0.930 35 H 0.100 0.900 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.161 -10.472 -6.581 13.818 hybrid contribution -0.756 -0.134 -0.150 0.783 sum 5.405 -10.607 -6.732 13.676 Atomic orbital electron populations 1.21739 0.93776 1.01927 1.03536 1.22436 0.95802 0.84035 0.99631 1.88035 1.20393 1.25946 1.95297 1.22479 0.82389 0.95554 1.00585 1.22545 0.98181 0.92690 0.88057 1.88054 1.80853 1.21356 1.37282 1.21787 1.00043 0.83126 0.96116 1.22359 0.78028 0.82150 0.87477 1.90592 1.36865 1.58891 1.50905 1.86369 1.75860 1.24725 1.38442 1.20644 0.92976 0.91157 0.75165 1.21297 0.89599 1.23335 1.21078 0.91550 1.25063 0.99026 0.95268 0.93746 1.70069 1.35265 1.24336 1.20682 0.86547 0.85249 0.77785 0.78591 1.19480 1.20828 1.20922 1.23489 0.98200 0.96318 1.01082 1.23025 0.97327 0.98769 0.99810 1.22726 0.94281 0.96759 0.99493 0.91340 0.91427 0.91941 0.93830 0.93430 0.92014 0.92356 0.92270 0.91744 0.89872 0.90444 0.92972 0.90025 0.93122 0.91384 0.92863 0.91861 0.89856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 10.28 37.16 0.38 -1.25 16 2 C 0.06 0.66 6.66 37.16 0.25 0.90 16 3 O -0.38 -5.70 10.31 -40.09 -0.41 -6.11 16 4 C 0.07 0.81 6.32 37.16 0.23 1.05 16 5 C 0.06 0.82 6.32 37.16 0.23 1.05 16 6 O -0.36 -6.71 9.84 -59.76 -0.59 -7.30 16 7 C 0.07 1.24 6.53 36.01 0.24 1.48 16 8 C 0.46 11.24 7.42 36.01 0.27 11.51 16 9 O -0.49 -13.49 14.72 -25.47 -0.37 -13.86 16 10 O -0.34 -8.67 9.83 -39.27 -0.39 -9.06 16 11 C 0.23 6.05 0.33 -90.96 -0.03 6.02 16 12 C -0.52 -14.80 7.16 -34.44 -0.25 -15.04 16 13 H 0.07 1.97 7.82 -52.48 -0.41 1.56 16 14 C 0.07 2.10 5.38 -17.82 -0.10 2.01 16 15 N -0.87 -24.98 12.79 55.43 0.71 -24.27 16 16 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 17 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 20 C -0.15 -3.45 6.97 -25.82 -0.18 -3.63 16 21 C -0.15 -2.98 8.03 -25.82 -0.21 -3.19 16 22 C -0.09 -2.18 7.08 -25.92 -0.18 -2.36 16 23 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 1.44 8.14 -51.92 -0.42 1.02 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.26 7.12 8.32 -40.82 -0.34 6.78 16 35 H 0.08 1.79 8.09 -51.93 -0.42 1.37 16 36 H 0.05 1.14 7.55 -51.93 -0.39 0.75 16 37 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.06 1.49 8.14 -51.93 -0.42 1.06 16 40 H 0.08 1.90 8.09 -51.93 -0.42 1.48 16 LS Contribution 340.68 15.07 5.13 5.13 Total: -1.00 -34.35 340.68 -6.98 -41.33 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -6.70 Total: -1.52 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: 0.66 Total: -1.46 kcal Atomic # 7 Polarization: -24.98 SS G_CDS: 0.71 Total: -24.27 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: -1.76 Total: -36.33 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.35 -6.98 -41.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810859544.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.624 kcal (2) G-P(sol) polarization free energy of solvation -34.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds