Wall clock time and date at job start Mon Mar 30 2020 05:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42905 * 109.47091 * 2 1 4 4 C 1.42897 * 113.99486 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46827 * 179.97438 * 4 3 2 6 6 O 1.42899 * 109.47062 * 65.00235 * 5 4 3 7 7 C 1.42904 * 114.00217 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.47098 * 179.97438 * 7 6 5 9 9 O 1.20824 * 120.00159 * 0.02562 * 8 7 6 10 10 O 1.34233 * 119.99694 * 180.02562 * 8 7 6 11 11 C 1.45197 * 116.99870 * 185.11209 * 10 8 7 12 12 C 1.50694 * 112.85395 * 296.95060 * 11 10 8 13 13 H 1.08004 * 120.00062 * 115.13040 * 12 11 10 14 14 C 1.37876 * 120.00010 * 295.40546 * 12 11 10 15 15 N 1.31514 * 119.99717 * 4.94672 * 14 12 11 16 16 Si 1.86795 * 120.00204 * 184.94381 * 14 12 11 17 17 H 1.48500 * 109.47035 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47423 * 120.00208 * 16 14 12 19 19 H 1.48503 * 109.47282 * 240.00150 * 16 14 12 20 20 C 1.53790 * 113.60997 * 68.14645 * 11 10 8 21 21 C 1.53959 * 87.02040 * 89.22709 * 20 11 10 22 22 C 1.53784 * 113.61257 * 165.74817 * 11 10 8 23 23 H 1.08997 * 109.47256 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47257 * 300.00300 * 1 2 3 25 25 H 1.09001 * 109.46993 * 60.00106 * 1 2 3 26 26 H 1.09000 * 109.47257 * 239.99700 * 2 1 3 27 27 H 1.09001 * 109.46993 * 119.99893 * 2 1 3 28 28 H 1.09003 * 109.47539 * 60.00609 * 4 3 2 29 29 H 1.08995 * 109.47646 * 300.00049 * 4 3 2 30 30 H 1.09000 * 109.47357 * 305.00608 * 5 4 3 31 31 H 1.09003 * 109.47492 * 185.00152 * 5 4 3 32 32 H 1.09009 * 109.46885 * 60.00135 * 7 6 5 33 33 H 1.08994 * 109.47071 * 300.00666 * 7 6 5 34 34 H 0.97005 * 119.99699 * 185.00000 * 15 14 12 35 35 H 1.08997 * 113.61029 * 203.75013 * 20 11 10 36 36 H 1.08997 * 113.61306 * 334.65120 * 20 11 10 37 37 H 1.08998 * 113.53460 * 270.81382 * 21 20 11 38 38 H 1.08995 * 113.73992 * 139.93631 * 21 20 11 39 39 H 1.09002 * 113.61224 * 25.35559 * 22 11 10 40 40 H 1.09001 * 113.61223 * 156.16931 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4600 0.0006 5 6 3.8254 2.9383 -0.0001 6 8 3.3976 3.5460 1.2204 7 6 3.7193 4.9346 1.3223 8 6 3.2238 5.4696 2.6411 9 8 2.6541 4.7369 3.4147 10 8 3.4154 6.7603 2.9565 11 6 3.0150 7.1801 4.2875 12 6 1.5342 7.0347 4.5263 13 1 1.1726 6.3358 5.2661 14 6 0.6408 7.7898 3.7965 15 7 1.0737 8.5645 2.8259 16 14 -1.1844 7.7125 4.1863 17 1 -1.4103 6.7736 5.3144 18 1 -1.6677 9.0648 4.5641 19 1 -1.9263 7.2379 2.9906 20 6 3.8815 6.5822 5.4086 21 6 4.7993 7.8071 5.2427 22 6 3.5725 8.5545 4.6936 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.8340 0.9764 -0.8892 29 1 3.8333 0.9766 0.8907 30 1 3.3499 3.4409 -0.8424 31 1 4.9083 3.0253 -0.0893 32 1 3.2419 5.4789 0.5073 33 1 4.8000 5.0627 1.2607 34 1 0.4560 9.1499 2.3605 35 1 3.3782 6.5414 6.3746 36 1 4.3567 5.6395 5.1375 37 1 5.5887 7.6627 4.5051 38 1 5.1693 8.2091 6.1858 39 1 3.7987 9.2017 3.8462 40 1 2.9839 9.0545 5.4628 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810859544.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:29 Heat of formation + Delta-G solvation = -174.962616 kcal Electronic energy + Delta-G solvation = -21615.944657 eV Core-core repulsion = 18203.479315 eV Total energy + Delta-G solvation = -3412.465342 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.24940 -39.60279 -38.85941 -37.94507 -35.91325 -34.44282 -32.81925 -30.70481 -28.96183 -28.16676 -26.36382 -24.46095 -23.69628 -23.51452 -22.15599 -20.01276 -19.09815 -18.06880 -17.92563 -17.59892 -17.13994 -16.88042 -16.67808 -16.41826 -15.97445 -15.67667 -15.24014 -15.05182 -14.32057 -14.11907 -13.62783 -13.49183 -13.36002 -13.19393 -13.08115 -12.91941 -12.80544 -12.41412 -12.30836 -12.20411 -12.02347 -11.90454 -11.81858 -11.67026 -11.05705 -10.79579 -10.73205 -10.55413 -10.46461 -10.30175 -8.18830 -6.34691 1.31013 1.35299 1.46511 1.64426 1.79450 2.36737 2.76931 2.98780 3.20678 3.85464 3.97530 4.04345 4.12745 4.14214 4.17234 4.23983 4.30451 4.33661 4.38189 4.45962 4.49504 4.52283 4.66237 4.74811 4.86513 4.87141 5.00564 5.04569 5.09576 5.23267 5.36255 5.51468 5.62845 5.73489 5.95090 6.08458 6.33743 6.40753 6.68091 7.29926 7.42219 8.85317 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.016574 B = 0.005163 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.989744 B = 5421.937628 C = 6526.651905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.051 3.949 3 O -0.418 6.418 4 C 0.061 3.939 5 C 0.053 3.947 6 O -0.395 6.395 7 C 0.079 3.921 8 C 0.446 3.554 9 O -0.531 6.531 10 O -0.345 6.345 11 C 0.206 3.794 12 C -0.536 4.536 13 H 0.041 0.959 14 C 0.033 3.967 15 N -0.888 5.888 16 Si 0.943 3.057 17 H -0.276 1.276 18 H -0.263 1.263 19 H -0.285 1.285 20 C -0.152 4.152 21 C -0.122 4.122 22 C -0.094 4.094 23 H 0.096 0.904 24 H 0.041 0.959 25 H 0.059 0.941 26 H 0.072 0.928 27 H 0.049 0.951 28 H 0.102 0.898 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.122 0.878 34 H 0.264 0.736 35 H 0.079 0.921 36 H 0.044 0.956 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.053 0.947 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.013 -10.820 -7.818 15.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.025 4.025 3 O -0.339 6.339 4 C -0.015 4.015 5 C -0.023 4.023 6 O -0.315 6.315 7 C 0.002 3.998 8 C 0.289 3.711 9 O -0.421 6.421 10 O -0.261 6.261 11 C 0.172 3.828 12 C -0.573 4.573 13 H 0.059 0.941 14 C -0.169 4.169 15 N -0.525 5.525 16 Si 0.768 3.232 17 H -0.201 1.201 18 H -0.188 1.188 19 H -0.212 1.212 20 C -0.190 4.190 21 C -0.159 4.159 22 C -0.132 4.132 23 H 0.114 0.886 24 H 0.060 0.940 25 H 0.078 0.922 26 H 0.090 0.910 27 H 0.068 0.932 28 H 0.120 0.880 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.121 0.879 32 H 0.112 0.888 33 H 0.140 0.860 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.063 0.937 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.072 0.928 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.555 -10.858 -7.589 15.250 hybrid contribution -1.186 -0.112 0.118 1.197 sum 6.369 -10.970 -7.472 14.721 Atomic orbital electron populations 1.21786 0.93834 1.03312 1.02101 1.22642 0.95906 0.82935 1.01040 1.87986 1.22184 1.28118 1.95609 1.22712 0.81303 0.95228 1.02238 1.22957 1.00532 0.92843 0.85943 1.88013 1.81956 1.21201 1.40288 1.21776 1.02305 0.83405 0.92313 1.23608 0.76932 0.81347 0.89204 1.90559 1.39003 1.59624 1.52868 1.86342 1.75664 1.25765 1.38342 1.20949 0.92125 0.93538 0.76173 1.21439 0.91926 1.23022 1.20961 0.94107 1.25666 1.02462 0.95104 0.93717 1.70123 1.36409 1.24844 1.21141 0.85749 0.81042 0.78453 0.77921 1.20079 1.18756 1.21168 1.23438 0.98425 0.97306 0.99786 1.22884 0.95934 0.95520 1.01589 1.22675 0.95888 0.95434 0.99156 0.88579 0.93972 0.92191 0.91020 0.93246 0.88039 0.92784 0.91779 0.87940 0.88780 0.86042 0.92664 0.90212 0.93727 0.89851 0.89385 0.92814 0.90340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 10.28 71.98 0.74 -2.48 16 2 C 0.05 1.10 6.66 71.98 0.48 1.58 16 3 O -0.42 -12.37 10.31 -144.33 -1.49 -13.86 16 4 C 0.06 1.37 6.32 71.98 0.45 1.83 16 5 C 0.05 1.27 6.32 71.98 0.45 1.73 16 6 O -0.39 -14.52 9.84 -125.53 -1.24 -15.76 16 7 C 0.08 2.83 6.53 71.24 0.47 3.29 16 8 C 0.45 21.99 7.42 71.24 0.53 22.52 16 9 O -0.53 -30.39 14.72 28.40 0.42 -29.97 16 10 O -0.34 -17.80 9.83 -51.45 -0.51 -18.30 16 11 C 0.21 10.76 0.33 -11.01 0.00 10.75 16 12 C -0.54 -31.59 7.16 25.60 0.18 -31.40 16 13 H 0.04 2.53 7.82 -2.91 -0.02 2.51 16 14 C 0.03 1.92 5.38 84.65 0.46 2.38 16 15 N -0.89 -51.62 12.79 21.45 0.27 -51.35 16 16 Si 0.94 46.14 29.54 68.60 2.03 48.16 16 17 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 18 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 19 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 20 C -0.15 -6.80 6.97 31.18 0.22 -6.58 16 21 C -0.12 -4.51 8.03 31.18 0.25 -4.26 16 22 C -0.09 -4.26 7.08 31.12 0.22 -4.04 16 23 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.09 3.14 8.14 -2.38 -0.02 3.12 16 33 H 0.12 3.22 8.14 -2.39 -0.02 3.20 16 34 H 0.26 14.49 8.32 -92.70 -0.77 13.72 16 35 H 0.08 3.53 8.09 -2.39 -0.02 3.51 16 36 H 0.04 2.01 7.55 -2.39 -0.02 1.99 16 37 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 38 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 39 H 0.05 2.50 8.14 -2.39 -0.02 2.48 16 40 H 0.08 3.57 8.09 -2.39 -0.02 3.55 16 Total: -1.00 -77.08 340.68 4.93 -72.15 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 1.00 Total: 13.63 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: 4.45 Total: -4.70 kcal Atomic # 7 Polarization: -51.62 SS G_CDS: 0.27 Total: -51.35 kcal Atomic # 8 Polarization: -75.08 SS G_CDS: -2.81 Total: -77.89 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.16 kcal Total: -77.08 4.93 -72.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810859544.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.817 kcal (2) G-P(sol) polarization free energy of solvation -77.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds