Wall clock time and date at job start Mon Mar 30 2020 04:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99835 * 2 1 4 4 H 1.48495 * 109.47209 * 240.00516 * 3 2 1 5 5 H 1.48498 * 109.47125 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.46974 * 120.00200 * 3 2 1 7 7 C 1.37878 * 119.99965 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99541 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00268 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47165 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.46956 * 180.02562 * 10 9 7 12 12 O 1.20826 * 119.99676 * 359.97438 * 11 10 9 13 13 O 1.34220 * 119.99612 * 180.02562 * 11 10 9 14 14 C 1.45207 * 116.99845 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47356 * 179.97438 * 14 13 11 16 16 O 1.42896 * 109.46947 * 64.99814 * 15 14 13 17 17 C 1.42899 * 114.00352 * 180.02562 * 16 15 14 18 18 C 1.53175 * 109.54545 * 269.56219 * 17 16 15 19 19 C 1.53094 * 109.16661 * 183.14980 * 18 17 16 20 20 O 1.42898 * 109.41211 * 57.60371 * 19 18 17 21 21 C 1.42897 * 114.10001 * 298.84343 * 20 19 18 22 22 C 1.53089 * 109.41656 * 61.16248 * 21 20 19 23 23 H 0.97008 * 120.00268 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47060 * 59.99705 * 9 7 2 25 25 H 1.09001 * 109.47174 * 300.00521 * 9 7 2 26 26 H 1.08997 * 109.46905 * 60.00259 * 10 9 7 27 27 H 1.08994 * 109.46959 * 299.99903 * 10 9 7 28 28 H 1.08999 * 109.47156 * 59.99585 * 14 13 11 29 29 H 1.09002 * 109.47103 * 299.99955 * 14 13 11 30 30 H 1.09000 * 109.47001 * 305.00153 * 15 14 13 31 31 H 1.09001 * 109.47043 * 184.99964 * 15 14 13 32 32 H 1.09004 * 109.61153 * 29.77680 * 17 16 15 33 33 H 1.09004 * 109.52259 * 303.05246 * 18 17 16 34 34 H 1.09006 * 109.52330 * 63.24079 * 18 17 16 35 35 H 1.09006 * 109.47665 * 297.62062 * 19 18 17 36 36 H 1.08993 * 109.47955 * 177.58818 * 19 18 17 37 37 H 1.09002 * 109.48425 * 301.17758 * 21 20 19 38 38 H 1.09001 * 109.49443 * 181.15303 * 21 20 19 39 39 H 1.08997 * 109.52675 * 182.48845 * 22 21 20 40 40 H 1.08995 * 109.52428 * 62.29514 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4918 -4.9672 -0.0012 12 8 0.2835 -4.9671 -0.0011 13 8 2.1630 -6.1295 -0.0008 14 6 1.3722 -7.3474 -0.0008 15 6 2.3042 -8.5607 -0.0010 16 8 3.0460 -8.5917 1.2200 17 6 3.9520 -9.6920 1.3220 18 6 3.2430 -10.8806 1.9784 19 6 4.2422 -12.0269 2.1550 20 8 5.3486 -11.5760 2.9390 21 6 6.0783 -10.4967 2.3519 22 6 5.1529 -9.2889 2.1832 23 1 -0.4851 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8896 26 1 2.8719 -3.6043 0.8895 27 1 2.8719 -3.6043 -0.8905 28 1 0.7436 -7.3724 -0.8910 29 1 0.7431 -7.3721 0.8890 30 1 2.9930 -8.4897 -0.8428 31 1 1.7136 -9.4725 -0.0906 32 1 4.2956 -9.9764 0.3274 33 1 2.8561 -10.5813 2.9526 34 1 2.4198 -11.2093 1.3439 35 1 4.5980 -12.3528 1.1776 36 1 3.7540 -12.8600 2.6606 37 1 6.4582 -10.8025 1.3770 38 1 6.9131 -10.2275 2.9990 39 1 5.6957 -8.4794 1.6952 40 1 4.8047 -8.9574 3.1614 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813090338.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:42 Heat of formation + Delta-G solvation = -200.259606 kcal Electronic energy + Delta-G solvation = -20560.532333 eV Core-core repulsion = 17146.970032 eV Total energy + Delta-G solvation = -3413.562301 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.06817 -39.77608 -37.80629 -36.04512 -33.56233 -32.99450 -31.52623 -31.20397 -29.95410 -26.03933 -24.73455 -24.02650 -23.06466 -21.81757 -20.71694 -19.80206 -17.56977 -17.32390 -16.60392 -16.46645 -16.29722 -15.87722 -15.43387 -15.38523 -15.10840 -14.46528 -14.26212 -13.86211 -13.67614 -13.30360 -12.72680 -12.58441 -12.22874 -12.16196 -11.82335 -11.71620 -11.62249 -11.20399 -11.09550 -10.93017 -10.73286 -10.65176 -10.35623 -10.06484 -10.01762 -9.92306 -9.77283 -9.50642 -9.17336 -8.36131 -6.00071 -4.04951 2.86449 3.11832 3.25268 3.33865 3.38389 3.40734 3.50766 4.34125 4.39445 4.45351 4.56246 4.67144 4.79864 4.83699 4.92131 4.98413 5.03033 5.10340 5.22007 5.27527 5.35154 5.36321 5.46031 5.51937 5.62271 5.75374 5.79958 5.86653 6.15492 6.23381 6.67072 6.77616 6.94716 6.97948 7.67862 7.75512 7.99689 8.28063 8.44358 9.02018 9.58896 11.10950 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.033618 B = 0.002728 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.688700 B =10260.498080 C =10905.449103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.033 3.967 10 C -0.103 4.103 11 C 0.456 3.544 12 O -0.508 6.508 13 O -0.359 6.359 14 C 0.065 3.935 15 C 0.065 3.935 16 O -0.369 6.369 17 C 0.088 3.912 18 C -0.180 4.180 19 C 0.064 3.936 20 O -0.383 6.383 21 C 0.064 3.936 22 C -0.155 4.155 23 H 0.262 0.738 24 H 0.025 0.975 25 H 0.026 0.974 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.050 0.950 36 H 0.096 0.904 37 H 0.051 0.949 38 H 0.100 0.900 39 H 0.084 0.916 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.858 -24.574 1.308 26.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.567 4.567 8 H 0.076 0.924 9 C -0.004 4.004 10 C -0.140 4.140 11 C 0.300 3.700 12 O -0.395 6.395 13 O -0.277 6.277 14 C -0.009 4.009 15 C -0.012 4.012 16 O -0.288 6.288 17 C 0.030 3.970 18 C -0.218 4.218 19 C -0.013 4.013 20 O -0.302 6.302 21 C -0.013 4.013 22 C -0.193 4.193 23 H 0.072 0.928 24 H 0.044 0.956 25 H 0.044 0.956 26 H 0.111 0.889 27 H 0.110 0.890 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.069 0.931 36 H 0.115 0.885 37 H 0.070 0.930 38 H 0.118 0.882 39 H 0.102 0.898 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 9.342 -24.424 1.627 26.201 hybrid contribution 0.077 0.775 -0.521 0.938 sum 9.419 -23.649 1.106 25.480 Atomic orbital electron populations 1.69985 1.06099 1.26857 1.49903 1.25024 0.94861 0.99328 0.95136 0.86595 0.79502 0.82882 0.78637 1.20171 1.21264 1.20154 1.21125 0.93041 0.90671 1.51846 0.92358 1.19013 0.93234 0.89289 0.98864 1.21750 1.00647 0.87668 1.03972 1.24772 0.87910 0.85766 0.71520 1.90630 1.15930 1.87747 1.45212 1.86610 1.41662 1.14697 1.84717 1.22919 0.93067 0.81753 1.03152 1.22617 0.94671 0.96271 0.87610 1.88055 1.55595 1.47135 1.38020 1.22083 0.89919 0.86669 0.98303 1.22765 0.99441 0.96435 1.03206 1.22548 0.86919 0.96001 0.95814 1.87946 1.43425 1.51461 1.47326 1.22600 0.93994 0.85911 0.98767 1.22301 0.95890 0.99164 1.01906 0.92799 0.95625 0.95596 0.88930 0.89040 0.89938 0.90641 0.92078 0.91465 0.92050 0.89902 0.90723 0.93136 0.88538 0.93026 0.88155 0.89766 0.89886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.26 13.29 55.43 0.74 -26.53 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 21.61 29.54 -169.99 -5.02 16.58 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.53 -14.95 9.11 -34.44 -0.31 -15.27 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.03 0.89 4.26 -27.88 -0.12 0.77 16 10 C -0.10 -2.16 5.75 -27.88 -0.16 -2.32 16 11 C 0.46 9.28 7.96 36.01 0.29 9.57 16 12 O -0.51 -11.83 15.73 -18.75 -0.29 -12.12 16 13 O -0.36 -6.18 10.19 -42.00 -0.43 -6.60 16 14 C 0.07 0.89 5.84 37.16 0.22 1.11 16 15 C 0.06 0.68 6.14 37.16 0.23 0.90 16 16 O -0.37 -4.49 9.97 -38.80 -0.39 -4.87 16 17 C 0.09 0.81 2.70 -26.55 -0.07 0.73 16 18 C -0.18 -1.42 5.76 -26.59 -0.15 -1.57 16 19 C 0.06 0.45 6.84 37.21 0.25 0.70 16 20 O -0.38 -3.50 10.76 -35.23 -0.38 -3.88 16 21 C 0.06 0.47 6.84 37.20 0.25 0.73 16 22 C -0.15 -1.36 5.79 -26.59 -0.15 -1.51 16 23 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 24 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 25 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 26 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 27 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 28 H 0.08 1.03 8.13 -51.93 -0.42 0.60 16 29 H 0.08 1.07 8.13 -51.93 -0.42 0.65 16 30 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 31 H 0.07 0.52 7.99 -51.93 -0.42 0.10 16 32 H 0.06 0.48 7.79 -51.93 -0.40 0.07 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.49 7.99 -51.93 -0.42 0.08 16 35 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 336.92 15.07 5.08 5.08 Total: -1.00 -33.86 336.92 -7.21 -41.07 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: -6.69 Total: -4.16 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: 0.17 Total: -4.56 kcal Atomic # 7 Polarization: -27.26 SS G_CDS: 0.74 Total: -26.53 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -1.49 Total: -27.48 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.86 -7.21 -41.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813090338.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.191 kcal (2) G-P(sol) polarization free energy of solvation -33.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds