Wall clock time and date at job start Mon Mar 30 2020 04:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99835 * 2 1 4 4 H 1.48495 * 109.47209 * 240.00516 * 3 2 1 5 5 H 1.48498 * 109.47125 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.46974 * 120.00200 * 3 2 1 7 7 C 1.37878 * 119.99965 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99541 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00268 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47165 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.46956 * 180.02562 * 10 9 7 12 12 O 1.20826 * 119.99676 * 359.97438 * 11 10 9 13 13 O 1.34220 * 119.99612 * 180.02562 * 11 10 9 14 14 C 1.45207 * 116.99845 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47356 * 179.97438 * 14 13 11 16 16 O 1.42896 * 109.46947 * 64.99814 * 15 14 13 17 17 C 1.42899 * 114.00352 * 180.02562 * 16 15 14 18 18 C 1.53175 * 109.54545 * 269.56219 * 17 16 15 19 19 C 1.53094 * 109.16661 * 183.14980 * 18 17 16 20 20 O 1.42898 * 109.41211 * 57.60371 * 19 18 17 21 21 C 1.42897 * 114.10001 * 298.84343 * 20 19 18 22 22 C 1.53089 * 109.41656 * 61.16248 * 21 20 19 23 23 H 0.97008 * 120.00268 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47060 * 59.99705 * 9 7 2 25 25 H 1.09001 * 109.47174 * 300.00521 * 9 7 2 26 26 H 1.08997 * 109.46905 * 60.00259 * 10 9 7 27 27 H 1.08994 * 109.46959 * 299.99903 * 10 9 7 28 28 H 1.08999 * 109.47156 * 59.99585 * 14 13 11 29 29 H 1.09002 * 109.47103 * 299.99955 * 14 13 11 30 30 H 1.09000 * 109.47001 * 305.00153 * 15 14 13 31 31 H 1.09001 * 109.47043 * 184.99964 * 15 14 13 32 32 H 1.09004 * 109.61153 * 29.77680 * 17 16 15 33 33 H 1.09004 * 109.52259 * 303.05246 * 18 17 16 34 34 H 1.09006 * 109.52330 * 63.24079 * 18 17 16 35 35 H 1.09006 * 109.47665 * 297.62062 * 19 18 17 36 36 H 1.08993 * 109.47955 * 177.58818 * 19 18 17 37 37 H 1.09002 * 109.48425 * 301.17758 * 21 20 19 38 38 H 1.09001 * 109.49443 * 181.15303 * 21 20 19 39 39 H 1.08997 * 109.52675 * 182.48845 * 22 21 20 40 40 H 1.08995 * 109.52428 * 62.29514 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4918 -4.9672 -0.0012 12 8 0.2835 -4.9671 -0.0011 13 8 2.1630 -6.1295 -0.0008 14 6 1.3722 -7.3474 -0.0008 15 6 2.3042 -8.5607 -0.0010 16 8 3.0460 -8.5917 1.2200 17 6 3.9520 -9.6920 1.3220 18 6 3.2430 -10.8806 1.9784 19 6 4.2422 -12.0269 2.1550 20 8 5.3486 -11.5760 2.9390 21 6 6.0783 -10.4967 2.3519 22 6 5.1529 -9.2889 2.1832 23 1 -0.4851 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8896 26 1 2.8719 -3.6043 0.8895 27 1 2.8719 -3.6043 -0.8905 28 1 0.7436 -7.3724 -0.8910 29 1 0.7431 -7.3721 0.8890 30 1 2.9930 -8.4897 -0.8428 31 1 1.7136 -9.4725 -0.0906 32 1 4.2956 -9.9764 0.3274 33 1 2.8561 -10.5813 2.9526 34 1 2.4198 -11.2093 1.3439 35 1 4.5980 -12.3528 1.1776 36 1 3.7540 -12.8600 2.6606 37 1 6.4582 -10.8025 1.3770 38 1 6.9131 -10.2275 2.9990 39 1 5.6957 -8.4794 1.6952 40 1 4.8047 -8.9574 3.1614 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813090338.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:41 Heat of formation + Delta-G solvation = -222.282517 kcal Electronic energy + Delta-G solvation = -20561.487318 eV Core-core repulsion = 17146.970032 eV Total energy + Delta-G solvation = -3414.517287 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.48255 -40.56713 -38.65421 -37.49138 -35.65129 -33.76279 -33.14407 -32.09764 -31.03130 -28.00492 -25.43718 -24.74478 -24.40917 -23.26434 -21.49851 -21.35374 -19.13195 -18.36817 -18.16061 -17.50357 -17.28603 -17.03407 -16.64864 -16.48914 -16.22583 -15.80071 -15.25286 -15.06731 -14.56097 -14.37220 -14.25114 -13.89718 -13.68275 -13.27491 -13.23941 -12.79822 -12.71659 -12.52392 -12.40443 -12.23878 -12.00796 -11.90851 -11.76034 -11.62869 -11.43302 -11.33004 -11.27056 -10.66836 -10.57294 -10.49439 -8.20152 -6.34221 1.23722 1.42988 1.47571 1.55074 1.73177 2.43304 2.50660 2.96557 3.13381 3.68632 3.74444 3.87536 3.93790 3.99894 4.05151 4.09330 4.24911 4.26976 4.34880 4.42084 4.44558 4.51816 4.60390 4.64904 4.70332 4.76995 4.83962 4.93396 5.05140 5.13175 5.20787 5.37048 5.46693 5.54577 5.80041 6.12855 6.21667 6.23879 6.78898 6.86220 7.35983 8.92384 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.033618 B = 0.002728 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.688700 B =10260.498080 C =10905.449103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.975 3.025 4 H -0.262 1.262 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.546 4.546 8 H 0.077 0.923 9 C 0.039 3.961 10 C -0.094 4.094 11 C 0.465 3.535 12 O -0.546 6.546 13 O -0.353 6.353 14 C 0.056 3.944 15 C 0.069 3.931 16 O -0.400 6.400 17 C 0.082 3.918 18 C -0.177 4.177 19 C 0.062 3.938 20 O -0.405 6.405 21 C 0.065 3.935 22 C -0.156 4.156 23 H 0.264 0.736 24 H -0.009 1.009 25 H -0.012 1.012 26 H 0.112 0.888 27 H 0.117 0.883 28 H 0.095 0.905 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.107 0.893 37 H 0.070 0.930 38 H 0.109 0.891 39 H 0.084 0.916 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.060 -25.546 0.565 28.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.799 3.201 4 H -0.186 1.186 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.583 4.583 8 H 0.095 0.905 9 C 0.002 3.998 10 C -0.132 4.132 11 C 0.310 3.690 12 O -0.437 6.437 13 O -0.270 6.270 14 C -0.018 4.018 15 C -0.007 4.007 16 O -0.320 6.320 17 C 0.025 3.975 18 C -0.215 4.215 19 C -0.015 4.015 20 O -0.325 6.325 21 C -0.011 4.011 22 C -0.193 4.193 23 H 0.073 0.927 24 H 0.009 0.991 25 H 0.006 0.994 26 H 0.130 0.870 27 H 0.135 0.865 28 H 0.113 0.887 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.119 0.881 32 H 0.099 0.901 33 H 0.080 0.920 34 H 0.108 0.892 35 H 0.087 0.913 36 H 0.125 0.875 37 H 0.088 0.912 38 H 0.127 0.873 39 H 0.102 0.898 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.581 -25.434 0.885 27.961 hybrid contribution -0.631 0.966 -0.278 1.187 sum 10.951 -24.468 0.607 26.814 Atomic orbital electron populations 1.70155 1.08250 1.28031 1.51156 1.26118 0.95752 1.03914 0.94465 0.85349 0.78045 0.77221 0.79501 1.18610 1.21261 1.18793 1.21617 0.94105 0.91307 1.51305 0.90463 1.18792 0.93668 0.91972 0.95418 1.21502 0.99344 0.86204 1.06112 1.24490 0.87125 0.86673 0.70697 1.90621 1.17483 1.88400 1.47152 1.86570 1.41659 1.14882 1.83841 1.23329 0.94003 0.81178 1.03293 1.22695 0.94809 0.95580 0.87571 1.88016 1.56443 1.48692 1.38850 1.22283 0.89555 0.86217 0.99434 1.22729 1.00081 0.96355 1.02287 1.22697 0.86266 0.95787 0.96719 1.87918 1.44151 1.51862 1.48528 1.22681 0.93649 0.84905 0.99883 1.22313 0.96301 0.99965 1.00763 0.92719 0.99052 0.99363 0.86989 0.86512 0.88735 0.91761 0.90652 0.88140 0.90070 0.91972 0.89177 0.91286 0.87453 0.91222 0.87315 0.89756 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.78 13.29 21.45 0.28 -58.49 16 2 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 3 Si 0.98 44.03 29.54 68.60 2.03 46.05 16 4 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 5 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.55 -30.89 9.11 25.60 0.23 -30.66 16 8 H 0.08 3.98 7.74 -2.91 -0.02 3.96 16 9 C 0.04 2.14 4.26 29.85 0.13 2.27 16 10 C -0.09 -3.92 5.75 29.85 0.17 -3.75 16 11 C 0.46 18.94 7.96 71.24 0.57 19.50 16 12 O -0.55 -26.16 15.73 21.96 0.35 -25.82 16 13 O -0.35 -11.77 10.19 -48.67 -0.50 -12.27 16 14 C 0.06 1.45 5.84 71.98 0.42 1.87 16 15 C 0.07 1.28 6.14 71.98 0.44 1.72 16 16 O -0.40 -9.14 9.97 -145.57 -1.45 -10.59 16 17 C 0.08 1.35 2.70 30.71 0.08 1.43 16 18 C -0.18 -2.47 5.76 30.68 0.18 -2.29 16 19 C 0.06 0.73 6.84 72.01 0.49 1.22 16 20 O -0.41 -6.80 10.76 -148.98 -1.60 -8.40 16 21 C 0.07 0.85 6.84 72.01 0.49 1.34 16 22 C -0.16 -2.58 5.79 30.68 0.18 -2.40 16 23 H 0.26 15.54 8.31 -92.70 -0.77 14.77 16 24 H -0.01 -0.55 8.10 -2.38 -0.02 -0.57 16 25 H -0.01 -0.75 8.10 -2.39 -0.02 -0.77 16 26 H 0.11 4.23 8.14 -2.39 -0.02 4.21 16 27 H 0.12 4.27 8.14 -2.39 -0.02 4.25 16 28 H 0.09 2.24 8.13 -2.39 -0.02 2.22 16 29 H 0.06 1.83 8.13 -2.39 -0.02 1.81 16 30 H 0.08 1.19 8.09 -2.39 -0.02 1.17 16 31 H 0.10 1.21 7.99 -2.39 -0.02 1.19 16 32 H 0.08 1.00 7.79 -2.38 -0.02 0.98 16 33 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 34 H 0.09 0.95 7.99 -2.38 -0.02 0.93 16 35 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 36 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -75.00 336.92 3.95 -71.05 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: 1.00 Total: 8.02 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: 3.85 Total: -9.55 kcal Atomic # 7 Polarization: -58.78 SS G_CDS: 0.28 Total: -58.49 kcal Atomic # 8 Polarization: -53.88 SS G_CDS: -3.21 Total: -57.08 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -75.00 3.95 -71.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813090338.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.235 kcal (2) G-P(sol) polarization free energy of solvation -74.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds