Wall clock time and date at job start Mon Mar 30 2020 05:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.56835 * 2 1 4 4 C 1.53106 * 109.45271 * 239.79180 * 2 1 3 5 5 O 1.42901 * 109.48837 * 297.61378 * 4 2 1 6 6 C 1.42898 * 114.09644 * 298.88883 * 5 4 2 7 7 C 1.53086 * 109.41797 * 61.15923 * 6 5 4 8 8 C 1.53179 * 109.52541 * 120.15847 * 2 1 3 9 9 H 1.08994 * 109.54595 * 182.88183 * 8 2 1 10 10 C 1.50701 * 109.54064 * 303.06210 * 8 2 1 11 11 O 1.20830 * 120.00200 * 359.81981 * 10 8 2 12 12 O 1.34226 * 119.99923 * 179.82455 * 10 8 2 13 13 C 1.45206 * 117.00278 * 179.97438 * 12 10 8 14 14 C 1.52998 * 109.47246 * 179.97438 * 13 12 10 15 15 O 1.42897 * 109.46795 * 65.00189 * 14 13 12 16 16 C 1.42905 * 113.99899 * 179.97438 * 15 14 13 17 17 C 1.50694 * 109.47179 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00563 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46985 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47276 * 299.99832 * 21 19 17 24 24 H 1.48498 * 109.47150 * 60.00043 * 21 19 17 25 25 H 1.08998 * 109.47171 * 299.83768 * 1 2 3 26 26 H 1.09002 * 109.47403 * 59.84550 * 1 2 3 27 27 H 1.09011 * 109.46877 * 179.84245 * 1 2 3 28 28 H 1.08997 * 109.40364 * 177.62753 * 4 2 1 29 29 H 1.09010 * 109.48065 * 57.64454 * 4 2 1 30 30 H 1.09006 * 109.47979 * 301.17417 * 6 5 4 31 31 H 1.09000 * 109.49079 * 181.15088 * 6 5 4 32 32 H 1.08994 * 109.52458 * 182.48521 * 7 6 5 33 33 H 1.09004 * 109.52365 * 62.29485 * 7 6 5 34 34 H 1.09000 * 109.46838 * 59.99859 * 13 12 10 35 35 H 1.08993 * 109.46935 * 300.00455 * 13 12 10 36 36 H 1.08995 * 109.47274 * 305.00227 * 14 13 12 37 37 H 1.09002 * 109.46559 * 184.99691 * 14 13 12 38 38 H 1.09007 * 109.46810 * 59.99780 * 16 15 14 39 39 H 1.09003 * 109.46936 * 300.00543 * 16 15 14 40 40 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0271 0.0000 4 6 2.0399 -0.7264 -1.2476 5 8 1.6099 -2.0888 -1.2152 6 6 2.0989 -2.8284 -0.0946 7 6 1.5896 -2.1880 1.1993 8 6 2.0420 -0.7253 1.2483 9 1 3.1307 -0.6811 1.2749 10 6 1.4802 -0.0649 2.4809 11 8 0.7480 0.8903 2.3741 12 8 1.7933 -0.5379 3.6975 13 6 1.2164 0.1480 4.8400 14 6 1.6829 -0.5291 6.1302 15 8 3.0963 -0.3696 6.2676 16 6 3.6368 -0.9686 7.4472 17 6 5.1257 -0.7399 7.4896 18 1 5.6107 -0.1916 6.6955 19 6 5.8689 -1.2306 8.5422 20 7 5.2782 -1.8979 9.5095 21 14 7.7146 -0.9477 8.5944 22 1 8.2762 -1.5700 9.8202 23 1 8.3431 -1.5588 7.3959 24 1 7.9915 0.5112 8.6091 25 1 -0.3633 0.5113 0.8914 26 1 -0.3634 0.5162 -0.8886 27 1 -0.3633 -1.0278 -0.0028 28 1 3.1290 -0.6893 -1.2685 29 1 1.6424 -0.2407 -2.1389 30 1 3.1889 -2.8189 -0.1004 31 1 1.7441 -3.8573 -0.1550 32 1 1.9973 -2.7242 2.0562 33 1 0.5008 -2.2335 1.2243 34 1 0.1290 0.1035 4.7793 35 1 1.5380 1.1894 4.8389 36 1 1.4391 -1.5908 6.0921 37 1 1.1810 -0.0714 6.9827 38 1 3.4334 -2.0395 7.4367 39 1 3.1753 -0.5197 8.3268 40 1 5.8011 -2.2434 10.2498 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815238706.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:40 Heat of formation + Delta-G solvation = -191.666409 kcal Electronic energy + Delta-G solvation = -21321.227925 eV Core-core repulsion = 17908.038252 eV Total energy + Delta-G solvation = -3413.189673 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.98573 -39.28701 -37.14383 -36.13398 -34.44360 -32.80517 -32.16568 -30.16163 -27.59923 -26.92172 -26.09465 -23.38233 -22.71198 -22.28839 -21.22038 -19.31062 -17.71653 -17.02567 -16.68441 -16.42537 -16.11864 -15.70198 -15.45409 -15.16771 -14.66256 -14.44362 -14.31746 -13.92627 -13.56637 -13.18495 -12.84855 -12.61311 -12.24449 -11.97041 -11.80862 -11.62198 -11.44882 -11.32178 -10.92530 -10.87804 -10.82359 -10.74642 -10.62176 -10.41747 -10.24332 -10.08156 -9.61320 -9.17170 -8.90172 -8.24217 -6.14428 -4.16402 2.22750 2.72631 3.30166 3.32880 3.36700 3.63139 4.24419 4.30005 4.44589 4.54589 4.65155 4.70941 4.88654 4.94688 5.18015 5.19574 5.22078 5.26588 5.35187 5.40063 5.43052 5.44190 5.52950 5.65826 5.79614 5.83739 5.86668 5.93690 6.02033 6.08814 6.24523 6.67861 6.92660 7.02276 7.36691 7.74937 7.84268 8.09695 8.49390 8.95732 9.48418 10.97089 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.024406 B = 0.003517 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.983539 B = 7959.969963 C = 8542.750773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.110 4.110 3 H 0.087 0.913 4 C 0.066 3.934 5 O -0.380 6.380 6 C 0.062 3.938 7 C -0.150 4.150 8 C -0.080 4.080 9 H 0.111 0.889 10 C 0.466 3.534 11 O -0.509 6.509 12 O -0.339 6.339 13 C 0.074 3.926 14 C 0.062 3.938 15 O -0.391 6.391 16 C 0.195 3.805 17 C -0.517 4.517 18 H 0.066 0.934 19 C 0.057 3.943 20 N -0.899 5.899 21 Si 0.909 3.091 22 H -0.286 1.286 23 H -0.274 1.274 24 H -0.275 1.275 25 H 0.084 0.916 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.098 0.902 30 H 0.056 0.944 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.050 0.950 37 H 0.062 0.938 38 H 0.007 0.993 39 H 0.006 0.994 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.999 0.192 -18.674 20.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.129 4.129 3 H 0.106 0.894 4 C -0.010 4.010 5 O -0.299 6.299 6 C -0.014 4.014 7 C -0.187 4.187 8 C -0.099 4.099 9 H 0.129 0.871 10 C 0.310 3.690 11 O -0.399 6.399 12 O -0.255 6.255 13 C 0.000 4.000 14 C -0.016 4.016 15 O -0.311 6.311 16 C 0.121 3.879 17 C -0.555 4.555 18 H 0.084 0.916 19 C -0.144 4.144 20 N -0.538 5.538 21 Si 0.736 3.264 22 H -0.211 1.211 23 H -0.200 1.200 24 H -0.200 1.200 25 H 0.103 0.897 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.116 0.884 30 H 0.074 0.926 31 H 0.117 0.883 32 H 0.110 0.890 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.025 0.975 39 H 0.024 0.976 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.182 0.394 -18.748 20.879 hybrid contribution 0.900 0.232 0.797 1.225 sum -8.282 0.627 -17.951 19.779 Atomic orbital electron populations 1.22115 0.93681 1.02394 1.03511 1.21652 0.98303 0.99938 0.93031 0.89428 1.22647 0.98515 0.82292 0.97586 1.87931 1.74149 1.22375 1.45407 1.22601 0.98428 0.95723 0.84686 1.22239 1.02886 0.93468 1.00155 1.21125 1.02457 0.96370 0.89933 0.87131 1.23528 0.78216 0.81964 0.85311 1.90554 1.34951 1.27172 1.87189 1.86599 1.67451 1.56753 1.14648 1.23215 0.97048 0.97182 0.82530 1.22317 0.86474 0.99355 0.93447 1.87915 1.17350 1.78842 1.47006 1.20234 0.94147 0.92270 0.81288 1.21009 0.91356 1.35586 1.07530 0.91575 1.24948 0.99444 0.94950 0.95092 1.69951 1.36330 1.36722 1.10780 0.86380 0.83960 0.78614 0.77434 1.21112 1.19968 1.19999 0.89726 0.92866 0.92436 0.92867 0.88388 0.92573 0.88253 0.88965 0.90231 0.90488 0.90521 0.93213 0.91966 0.97493 0.97619 0.92542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 8.43 37.16 0.31 -1.39 16 2 C -0.11 -1.10 2.45 -90.47 -0.22 -1.32 16 3 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 4 C 0.07 0.56 6.25 37.21 0.23 0.80 16 5 O -0.38 -3.80 10.19 -35.23 -0.36 -4.16 16 6 C 0.06 0.53 6.84 37.20 0.25 0.79 16 7 C -0.15 -1.47 4.99 -26.59 -0.13 -1.60 16 8 C -0.08 -0.88 2.50 -91.59 -0.23 -1.11 16 9 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 10 C 0.47 6.72 6.96 36.01 0.25 6.97 16 11 O -0.51 -8.05 13.23 -18.75 -0.25 -8.30 16 12 O -0.34 -5.55 10.12 -42.01 -0.43 -5.97 16 13 C 0.07 1.16 5.84 37.16 0.22 1.38 16 14 C 0.06 1.12 6.33 37.16 0.24 1.36 16 15 O -0.39 -9.45 10.30 -38.80 -0.40 -9.85 16 16 C 0.19 5.31 5.69 36.00 0.20 5.51 16 17 C -0.52 -15.19 9.43 -34.44 -0.32 -15.51 16 18 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 21 Si 0.91 21.70 29.54 -169.99 -5.02 16.68 16 22 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 25 H 0.08 1.07 5.28 -51.93 -0.27 0.80 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.61 6.15 -51.92 -0.32 0.29 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.10 0.70 8.14 -51.92 -0.42 0.28 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.08 0.80 6.64 -51.93 -0.34 0.45 16 34 H 0.08 1.01 8.13 -51.93 -0.42 0.59 16 35 H 0.08 1.24 8.13 -51.93 -0.42 0.82 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.01 0.20 8.14 -51.92 -0.42 -0.22 16 39 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 40 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 327.32 15.07 4.93 4.93 Total: -1.00 -32.66 327.32 -6.48 -39.15 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -6.40 Total: -3.92 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: 0.70 Total: -2.59 kcal Atomic # 7 Polarization: -26.70 SS G_CDS: 0.74 Total: -25.96 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: -1.43 Total: -28.27 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.66 -6.48 -39.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815238706.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.521 kcal (2) G-P(sol) polarization free energy of solvation -32.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds