Wall clock time and date at job start Mon Mar 30 2020 05:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.56835 * 2 1 4 4 C 1.53106 * 109.45271 * 239.79180 * 2 1 3 5 5 O 1.42901 * 109.48837 * 297.61378 * 4 2 1 6 6 C 1.42898 * 114.09644 * 298.88883 * 5 4 2 7 7 C 1.53086 * 109.41797 * 61.15923 * 6 5 4 8 8 C 1.53179 * 109.52541 * 120.15847 * 2 1 3 9 9 H 1.08994 * 109.54595 * 182.88183 * 8 2 1 10 10 C 1.50701 * 109.54064 * 303.06210 * 8 2 1 11 11 O 1.20830 * 120.00200 * 359.81981 * 10 8 2 12 12 O 1.34226 * 119.99923 * 179.82455 * 10 8 2 13 13 C 1.45206 * 117.00278 * 179.97438 * 12 10 8 14 14 C 1.52998 * 109.47246 * 179.97438 * 13 12 10 15 15 O 1.42897 * 109.46795 * 65.00189 * 14 13 12 16 16 C 1.42905 * 113.99899 * 179.97438 * 15 14 13 17 17 C 1.50694 * 109.47179 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00563 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46985 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47276 * 299.99832 * 21 19 17 24 24 H 1.48498 * 109.47150 * 60.00043 * 21 19 17 25 25 H 1.08998 * 109.47171 * 299.83768 * 1 2 3 26 26 H 1.09002 * 109.47403 * 59.84550 * 1 2 3 27 27 H 1.09011 * 109.46877 * 179.84245 * 1 2 3 28 28 H 1.08997 * 109.40364 * 177.62753 * 4 2 1 29 29 H 1.09010 * 109.48065 * 57.64454 * 4 2 1 30 30 H 1.09006 * 109.47979 * 301.17417 * 6 5 4 31 31 H 1.09000 * 109.49079 * 181.15088 * 6 5 4 32 32 H 1.08994 * 109.52458 * 182.48521 * 7 6 5 33 33 H 1.09004 * 109.52365 * 62.29485 * 7 6 5 34 34 H 1.09000 * 109.46838 * 59.99859 * 13 12 10 35 35 H 1.08993 * 109.46935 * 300.00455 * 13 12 10 36 36 H 1.08995 * 109.47274 * 305.00227 * 14 13 12 37 37 H 1.09002 * 109.46559 * 184.99691 * 14 13 12 38 38 H 1.09007 * 109.46810 * 59.99780 * 16 15 14 39 39 H 1.09003 * 109.46936 * 300.00543 * 16 15 14 40 40 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0271 0.0000 4 6 2.0399 -0.7264 -1.2476 5 8 1.6099 -2.0888 -1.2152 6 6 2.0989 -2.8284 -0.0946 7 6 1.5896 -2.1880 1.1993 8 6 2.0420 -0.7253 1.2483 9 1 3.1307 -0.6811 1.2749 10 6 1.4802 -0.0649 2.4809 11 8 0.7480 0.8903 2.3741 12 8 1.7933 -0.5379 3.6975 13 6 1.2164 0.1480 4.8400 14 6 1.6829 -0.5291 6.1302 15 8 3.0963 -0.3696 6.2676 16 6 3.6368 -0.9686 7.4472 17 6 5.1257 -0.7399 7.4896 18 1 5.6107 -0.1916 6.6955 19 6 5.8689 -1.2306 8.5422 20 7 5.2782 -1.8979 9.5095 21 14 7.7146 -0.9477 8.5944 22 1 8.2762 -1.5700 9.8202 23 1 8.3431 -1.5588 7.3959 24 1 7.9915 0.5112 8.6091 25 1 -0.3633 0.5113 0.8914 26 1 -0.3634 0.5162 -0.8886 27 1 -0.3633 -1.0278 -0.0028 28 1 3.1290 -0.6893 -1.2685 29 1 1.6424 -0.2407 -2.1389 30 1 3.1889 -2.8189 -0.1004 31 1 1.7441 -3.8573 -0.1550 32 1 1.9973 -2.7242 2.0562 33 1 0.5008 -2.2335 1.2243 34 1 0.1290 0.1035 4.7793 35 1 1.5380 1.1894 4.8389 36 1 1.4391 -1.5908 6.0921 37 1 1.1810 -0.0714 6.9827 38 1 3.4334 -2.0395 7.4367 39 1 3.1753 -0.5197 8.3268 40 1 5.8011 -2.2434 10.2498 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815238706.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:39 Heat of formation + Delta-G solvation = -212.455985 kcal Electronic energy + Delta-G solvation = -21322.129428 eV Core-core repulsion = 17908.038252 eV Total energy + Delta-G solvation = -3414.091176 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.03189 -40.19940 -38.75790 -37.54163 -35.29974 -34.95828 -32.95884 -31.65696 -29.14097 -28.30541 -26.93076 -24.60165 -24.14632 -23.84623 -22.37975 -20.16286 -18.85004 -18.69377 -17.98295 -17.89146 -17.19984 -16.78000 -16.77273 -16.41719 -16.16920 -15.90415 -15.44846 -14.97528 -14.80452 -14.35121 -14.24871 -13.75928 -13.63321 -13.23908 -13.10397 -12.92599 -12.69794 -12.55320 -12.48471 -12.38496 -12.13715 -12.00097 -11.70878 -11.59013 -11.55173 -11.31561 -11.10107 -10.90522 -10.43415 -10.28833 -8.33314 -6.45876 1.09863 1.40234 1.44669 1.53188 1.61568 2.33778 2.97210 3.00723 3.03743 3.38283 3.61001 3.64807 3.89983 3.92007 4.06306 4.07567 4.20563 4.36870 4.40248 4.48606 4.54497 4.57370 4.65340 4.70572 4.77053 4.79788 4.83471 4.90445 5.04178 5.11260 5.15897 5.19759 5.31639 5.52688 5.60125 5.93513 6.25626 6.47832 6.68339 6.77640 7.25819 8.78713 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.024406 B = 0.003517 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.983539 B = 7959.969963 C = 8542.750773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.108 4.108 3 H 0.087 0.913 4 C 0.068 3.932 5 O -0.393 6.393 6 C 0.063 3.937 7 C -0.146 4.146 8 C -0.080 4.080 9 H 0.120 0.880 10 C 0.463 3.537 11 O -0.526 6.526 12 O -0.357 6.357 13 C 0.078 3.922 14 C 0.054 3.946 15 O -0.409 6.409 16 C 0.208 3.792 17 C -0.553 4.553 18 H 0.060 0.940 19 C 0.009 3.991 20 N -0.929 5.929 21 Si 0.982 3.018 22 H -0.274 1.274 23 H -0.265 1.265 24 H -0.266 1.266 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.113 0.887 30 H 0.067 0.933 31 H 0.114 0.886 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.107 0.893 35 H 0.070 0.930 36 H 0.057 0.943 37 H 0.081 0.919 38 H -0.010 1.010 39 H -0.009 1.009 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.115 0.097 -19.864 21.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.127 4.127 3 H 0.105 0.895 4 C -0.009 4.009 5 O -0.312 6.312 6 C -0.013 4.013 7 C -0.183 4.183 8 C -0.099 4.099 9 H 0.138 0.862 10 C 0.308 3.692 11 O -0.416 6.416 12 O -0.273 6.273 13 C 0.004 3.996 14 C -0.023 4.023 15 O -0.329 6.329 16 C 0.133 3.867 17 C -0.590 4.590 18 H 0.079 0.921 19 C -0.190 4.190 20 N -0.568 5.568 21 Si 0.805 3.195 22 H -0.199 1.199 23 H -0.189 1.189 24 H -0.191 1.191 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.131 0.869 30 H 0.085 0.915 31 H 0.132 0.868 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.124 0.876 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.008 0.992 39 H 0.009 0.991 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.322 0.302 -19.954 21.622 hybrid contribution 0.510 0.271 1.152 1.289 sum -7.812 0.573 -18.801 20.368 Atomic orbital electron populations 1.22042 0.94284 1.02051 1.02916 1.21677 0.97754 1.00054 0.93216 0.89508 1.22744 0.99411 0.81592 0.97139 1.87921 1.74559 1.22985 1.45744 1.22692 0.99058 0.96111 0.83467 1.22221 1.02570 0.92585 1.00957 1.21294 1.02861 0.97048 0.88667 0.86200 1.24215 0.77826 0.81782 0.85370 1.90551 1.35743 1.27985 1.87282 1.86597 1.67991 1.57268 1.15464 1.23163 0.98533 0.96291 0.81569 1.22636 0.83517 1.00477 0.95648 1.87859 1.20921 1.78613 1.45539 1.19870 0.93711 0.91150 0.81928 1.21360 0.92715 1.36720 1.08213 0.92129 1.25942 1.04868 0.94001 0.94209 1.70053 1.38535 1.36963 1.11284 0.85246 0.77207 0.78968 0.78078 1.19896 1.18936 1.19104 0.91989 0.91681 0.92622 0.91468 0.86888 0.91510 0.86839 0.89369 0.90744 0.87553 0.91149 0.92519 0.90148 0.99219 0.99097 0.91951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.17 8.43 71.98 0.61 -2.56 16 2 C -0.11 -2.01 2.45 -10.70 -0.03 -2.03 16 3 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 4 C 0.07 1.00 6.25 72.02 0.45 1.45 16 5 O -0.39 -7.01 10.19 -148.98 -1.52 -8.53 16 6 C 0.06 0.96 6.84 72.01 0.49 1.45 16 7 C -0.15 -2.70 4.99 30.68 0.15 -2.55 16 8 C -0.08 -1.69 2.50 -11.42 -0.03 -1.72 16 9 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 10 C 0.46 13.19 6.96 71.24 0.50 13.68 16 11 O -0.53 -16.51 13.23 21.95 0.29 -16.22 16 12 O -0.36 -11.62 10.12 -48.73 -0.49 -12.11 16 13 C 0.08 2.42 5.84 71.98 0.42 2.84 16 14 C 0.05 1.96 6.33 71.98 0.46 2.41 16 15 O -0.41 -20.07 10.30 -145.57 -1.50 -21.57 16 16 C 0.21 11.63 5.69 71.23 0.41 12.04 16 17 C -0.55 -32.90 9.43 25.60 0.24 -32.66 16 18 H 0.06 3.58 7.81 -2.91 -0.02 3.55 16 19 C 0.01 0.49 5.46 84.66 0.46 0.95 16 20 N -0.93 -55.36 13.29 21.45 0.28 -55.07 16 21 Si 0.98 43.95 29.54 68.60 2.03 45.98 16 22 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 23 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 24 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 25 H 0.06 1.56 5.28 -2.39 -0.01 1.55 16 26 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.05 1.13 6.15 -2.38 -0.01 1.12 16 28 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.11 1.33 8.14 -2.38 -0.02 1.31 16 30 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.07 1.44 6.64 -2.39 -0.02 1.43 16 34 H 0.11 2.67 8.13 -2.39 -0.02 2.65 16 35 H 0.07 2.27 8.13 -2.39 -0.02 2.25 16 36 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 38 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 39 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 40 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -69.63 327.32 4.23 -65.40 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: 1.01 Total: 8.83 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: 4.13 Total: -6.70 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: 0.28 Total: -55.07 kcal Atomic # 8 Polarization: -55.21 SS G_CDS: -3.22 Total: -58.43 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -69.63 4.23 -65.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815238706.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.057 kcal (2) G-P(sol) polarization free energy of solvation -69.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds