Wall clock time and date at job start Mon Mar 30 2020 05:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.57553 * 2 1 4 4 C 1.53101 * 109.51991 * 120.15505 * 2 1 3 5 5 O 1.42898 * 109.41142 * 177.51003 * 4 2 1 6 6 C 1.42897 * 114.10414 * 298.84268 * 5 4 2 7 7 C 1.53090 * 109.41367 * 61.15919 * 6 5 4 8 8 C 1.53175 * 109.52206 * 239.84031 * 2 1 3 9 9 H 1.08998 * 109.62111 * 303.02435 * 8 2 1 10 10 C 1.50700 * 109.54325 * 63.25105 * 8 2 1 11 11 O 1.20828 * 119.99840 * 359.55465 * 10 8 2 12 12 O 1.34232 * 119.99914 * 179.55565 * 10 8 2 13 13 C 1.45200 * 116.99719 * 180.02562 * 12 10 8 14 14 C 1.53007 * 109.46643 * 179.97438 * 13 12 10 15 15 O 1.42902 * 109.47311 * 65.00039 * 14 13 12 16 16 C 1.42895 * 114.00370 * 179.97438 * 15 14 13 17 17 C 1.50695 * 109.47139 * 179.97438 * 16 15 14 18 18 H 1.07995 * 120.00496 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99572 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00327 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99951 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 59.99744 * 21 19 17 23 23 H 1.48503 * 109.47261 * 299.99924 * 21 19 17 24 24 H 1.48500 * 109.47454 * 179.97438 * 21 19 17 25 25 H 1.08989 * 109.47254 * 180.15621 * 1 2 3 26 26 H 1.09004 * 109.47012 * 300.16308 * 1 2 3 27 27 H 1.09008 * 109.46810 * 60.15427 * 1 2 3 28 28 H 1.08996 * 109.47605 * 57.53224 * 4 2 1 29 29 H 1.08994 * 109.47937 * 297.49884 * 4 2 1 30 30 H 1.09003 * 109.47979 * 301.17975 * 6 5 4 31 31 H 1.09002 * 109.49565 * 181.14798 * 6 5 4 32 32 H 1.09000 * 109.52327 * 182.48308 * 7 6 5 33 33 H 1.09007 * 109.52129 * 62.29921 * 7 6 5 34 34 H 1.08992 * 109.47048 * 60.00178 * 13 12 10 35 35 H 1.08998 * 109.47007 * 299.99428 * 13 12 10 36 36 H 1.09000 * 109.47177 * 304.99635 * 14 13 12 37 37 H 1.09001 * 109.46772 * 184.99690 * 14 13 12 38 38 H 1.09002 * 109.46880 * 59.99856 * 16 15 14 39 39 H 1.08998 * 109.47064 * 300.00681 * 16 15 14 40 40 H 0.97006 * 119.99995 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0416 -0.7249 1.2477 5 8 3.4693 -0.7744 1.2163 6 6 4.0043 -1.4817 0.0959 7 6 3.5716 -0.7873 -1.1980 8 6 2.0419 -0.7253 -1.2483 9 1 1.6368 -1.7369 -1.2757 10 6 1.6079 0.0252 -2.4809 11 8 0.9490 1.0324 -2.3743 12 8 1.9532 -0.4253 -3.6973 13 6 1.5009 0.3484 -4.8397 14 6 1.9881 -0.3145 -6.1297 15 8 1.3686 -1.5946 -6.2709 16 6 1.7571 -2.3015 -7.4504 17 6 1.0480 -3.6303 -7.4961 18 1 0.3682 -3.9073 -6.7039 19 6 1.2670 -4.4927 -8.5494 20 7 2.0952 -4.1558 -9.5138 21 14 0.3875 -6.1397 -8.6065 22 1 -1.0806 -5.9165 -8.6249 23 1 0.7519 -6.9373 -7.4081 24 1 0.7914 -6.8743 -9.8323 25 1 -0.3633 -1.0275 0.0028 26 1 -0.3633 0.5164 0.8886 27 1 -0.3633 0.5115 -0.8914 28 1 1.6431 -1.7392 1.2678 29 1 1.7158 -0.1885 2.1389 30 1 3.6314 -2.5060 0.1009 31 1 5.0925 -1.4907 0.1572 32 1 3.9417 -1.3502 -2.0549 33 1 3.9781 0.2239 -1.2222 34 1 1.9039 1.3591 -4.7764 35 1 0.4117 0.3908 -4.8415 36 1 3.0704 -0.4372 -6.0889 37 1 1.7253 0.3122 -6.9819 38 1 2.8347 -2.4653 -7.4374 39 1 1.4894 -1.7158 -8.3298 40 1 2.5517 -3.3003 -9.4844 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815238707.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:42 Heat of formation + Delta-G solvation = -200.657016 kcal Electronic energy + Delta-G solvation = -21278.385452 eV Core-core repulsion = 17864.805918 eV Total energy + Delta-G solvation = -3413.579534 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.93841 -39.26029 -37.26879 -36.25039 -34.59434 -33.09698 -32.53630 -30.18428 -27.46684 -26.53061 -26.07011 -22.81739 -22.59972 -22.52461 -21.45054 -20.10083 -17.84844 -17.11658 -16.83369 -16.63974 -16.32621 -15.67477 -15.48657 -14.92637 -14.76337 -14.49360 -14.22220 -13.75766 -13.57924 -13.22883 -12.77978 -12.63952 -12.38546 -12.16067 -11.87458 -11.76654 -11.73587 -11.34141 -11.26306 -10.94706 -10.77544 -10.75514 -10.57358 -10.39896 -10.29064 -10.11588 -9.70976 -8.97058 -8.69083 -8.31558 -6.51069 -4.20077 2.18382 2.66649 3.40611 3.43153 3.58590 3.62128 4.20727 4.34566 4.38477 4.48014 4.57500 4.61295 4.89579 4.92634 5.11303 5.11847 5.19309 5.26961 5.27135 5.32446 5.33990 5.39663 5.48227 5.61175 5.69516 5.72418 5.75920 5.82074 5.95293 6.00550 6.11241 6.56246 6.66833 6.87864 7.05289 7.77201 7.80944 8.10543 8.56774 8.74577 9.50397 10.89226 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.022181 B = 0.003560 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.018378 B = 7863.321019 C = 8281.190684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.109 4.109 3 H 0.088 0.912 4 C 0.067 3.933 5 O -0.383 6.383 6 C 0.062 3.938 7 C -0.149 4.149 8 C -0.080 4.080 9 H 0.111 0.889 10 C 0.467 3.533 11 O -0.511 6.511 12 O -0.340 6.340 13 C 0.074 3.926 14 C 0.059 3.941 15 O -0.382 6.382 16 C 0.186 3.814 17 C -0.598 4.598 18 H 0.061 0.939 19 C 0.018 3.982 20 N -0.910 5.910 21 Si 1.079 2.921 22 H -0.286 1.286 23 H -0.285 1.285 24 H -0.281 1.281 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.054 0.946 29 H 0.099 0.901 30 H 0.057 0.943 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.050 0.950 37 H 0.063 0.937 38 H -0.003 1.003 39 H -0.004 1.004 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.876 8.239 19.274 21.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.128 4.128 3 H 0.106 0.894 4 C -0.010 4.010 5 O -0.302 6.302 6 C -0.014 4.014 7 C -0.187 4.187 8 C -0.099 4.099 9 H 0.129 0.871 10 C 0.310 3.690 11 O -0.399 6.399 12 O -0.255 6.255 13 C 0.001 3.999 14 C -0.018 4.018 15 O -0.302 6.302 16 C 0.111 3.889 17 C -0.636 4.636 18 H 0.079 0.921 19 C -0.186 4.186 20 N -0.546 5.546 21 Si 0.906 3.094 22 H -0.212 1.212 23 H -0.212 1.212 24 H -0.206 1.206 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.098 0.902 28 H 0.073 0.927 29 H 0.117 0.883 30 H 0.075 0.925 31 H 0.118 0.882 32 H 0.111 0.889 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.015 0.985 39 H 0.014 0.986 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.491 7.164 18.625 20.011 hybrid contribution 0.121 1.654 0.262 1.679 sum 1.612 8.818 18.886 20.906 Atomic orbital electron populations 1.21948 0.93623 1.02167 1.03706 1.21681 0.97327 1.00789 0.93014 0.89397 1.22696 0.80911 0.99874 0.97531 1.87936 1.20327 1.76408 1.45503 1.22612 0.99537 0.94702 0.84589 1.22223 0.92888 1.03318 1.00231 1.21184 0.97933 1.00884 0.89911 0.87061 1.23536 0.76691 0.83495 0.85259 1.90597 1.36686 1.25289 1.87374 1.86597 1.70453 1.53804 1.14692 1.23183 1.00744 0.93543 0.82444 1.22368 0.97471 0.88302 0.93707 1.87947 1.67976 1.27946 1.46302 1.20322 0.94718 0.91991 0.81860 1.21891 1.29390 1.01454 1.10852 0.92107 1.25951 0.96654 1.04029 0.91918 1.70809 1.26436 1.24186 1.33175 0.83401 0.75543 0.74201 0.76246 1.21187 1.21158 1.20576 0.92733 0.92251 0.90182 0.92724 0.88335 0.92496 0.88166 0.88880 0.90482 0.90359 0.90464 0.93183 0.91953 0.98490 0.98617 0.92312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 8.92 37.16 0.33 -1.23 16 2 C -0.11 -1.09 2.05 -90.48 -0.19 -1.28 16 3 H 0.09 0.97 8.03 -51.93 -0.42 0.56 16 4 C 0.07 0.57 6.13 37.21 0.23 0.80 16 5 O -0.38 -3.89 10.76 -35.23 -0.38 -4.27 16 6 C 0.06 0.54 6.84 37.20 0.25 0.79 16 7 C -0.15 -1.46 5.35 -26.59 -0.14 -1.61 16 8 C -0.08 -0.90 2.22 -91.59 -0.20 -1.10 16 9 H 0.11 1.18 8.14 -51.93 -0.42 0.75 16 10 C 0.47 6.77 6.99 36.01 0.25 7.03 16 11 O -0.51 -8.14 13.62 -18.75 -0.26 -8.39 16 12 O -0.34 -5.60 10.12 -42.03 -0.43 -6.02 16 13 C 0.07 1.18 5.85 37.16 0.22 1.40 16 14 C 0.06 1.07 6.33 37.16 0.24 1.31 16 15 O -0.38 -9.32 10.30 -38.80 -0.40 -9.71 16 16 C 0.19 5.05 5.00 36.00 0.18 5.23 16 17 C -0.60 -17.82 9.43 -34.44 -0.32 -18.15 16 18 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 19 C 0.02 0.52 5.46 -17.82 -0.10 0.42 16 20 N -0.91 -27.77 13.65 55.43 0.76 -27.01 16 21 Si 1.08 25.32 29.90 -169.99 -5.08 20.23 16 22 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.29 -6.37 7.11 56.52 0.40 -5.96 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H 0.05 0.49 8.14 -51.94 -0.42 0.07 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.99 5.80 -51.92 -0.30 0.69 16 28 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 1.03 8.13 -51.93 -0.42 0.61 16 35 H 0.08 1.25 8.13 -51.93 -0.42 0.83 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.00 -0.07 8.01 -51.93 -0.42 -0.49 16 39 H 0.00 -0.10 8.01 -51.93 -0.42 -0.52 16 40 H 0.27 8.06 7.22 -40.82 -0.29 7.77 16 LS Contribution 330.95 15.07 4.99 4.99 Total: -1.00 -33.78 330.95 -6.60 -40.38 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: -6.55 Total: -3.80 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: 0.75 Total: -6.39 kcal Atomic # 7 Polarization: -27.77 SS G_CDS: 0.76 Total: -27.01 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -1.46 Total: -28.40 kcal Atomic # 14 Polarization: 25.32 SS G_CDS: -5.08 Total: 20.23 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.78 -6.60 -40.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815238707.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.279 kcal (2) G-P(sol) polarization free energy of solvation -33.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds