Wall clock time and date at job start Mon Mar 30 2020 05:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.57553 * 2 1 4 4 C 1.53101 * 109.51991 * 120.15505 * 2 1 3 5 5 O 1.42898 * 109.41142 * 177.51003 * 4 2 1 6 6 C 1.42897 * 114.10414 * 298.84268 * 5 4 2 7 7 C 1.53090 * 109.41367 * 61.15919 * 6 5 4 8 8 C 1.53175 * 109.52206 * 239.84031 * 2 1 3 9 9 H 1.08998 * 109.62111 * 303.02435 * 8 2 1 10 10 C 1.50700 * 109.54325 * 63.25105 * 8 2 1 11 11 O 1.20828 * 119.99840 * 359.55465 * 10 8 2 12 12 O 1.34232 * 119.99914 * 179.55565 * 10 8 2 13 13 C 1.45200 * 116.99719 * 180.02562 * 12 10 8 14 14 C 1.53007 * 109.46643 * 179.97438 * 13 12 10 15 15 O 1.42902 * 109.47311 * 65.00039 * 14 13 12 16 16 C 1.42895 * 114.00370 * 179.97438 * 15 14 13 17 17 C 1.50695 * 109.47139 * 179.97438 * 16 15 14 18 18 H 1.07995 * 120.00496 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99572 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00327 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99951 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 59.99744 * 21 19 17 23 23 H 1.48503 * 109.47261 * 299.99924 * 21 19 17 24 24 H 1.48500 * 109.47454 * 179.97438 * 21 19 17 25 25 H 1.08989 * 109.47254 * 180.15621 * 1 2 3 26 26 H 1.09004 * 109.47012 * 300.16308 * 1 2 3 27 27 H 1.09008 * 109.46810 * 60.15427 * 1 2 3 28 28 H 1.08996 * 109.47605 * 57.53224 * 4 2 1 29 29 H 1.08994 * 109.47937 * 297.49884 * 4 2 1 30 30 H 1.09003 * 109.47979 * 301.17975 * 6 5 4 31 31 H 1.09002 * 109.49565 * 181.14798 * 6 5 4 32 32 H 1.09000 * 109.52327 * 182.48308 * 7 6 5 33 33 H 1.09007 * 109.52129 * 62.29921 * 7 6 5 34 34 H 1.08992 * 109.47048 * 60.00178 * 13 12 10 35 35 H 1.08998 * 109.47007 * 299.99428 * 13 12 10 36 36 H 1.09000 * 109.47177 * 304.99635 * 14 13 12 37 37 H 1.09001 * 109.46772 * 184.99690 * 14 13 12 38 38 H 1.09002 * 109.46880 * 59.99856 * 16 15 14 39 39 H 1.08998 * 109.47064 * 300.00681 * 16 15 14 40 40 H 0.97006 * 119.99995 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0416 -0.7249 1.2477 5 8 3.4693 -0.7744 1.2163 6 6 4.0043 -1.4817 0.0959 7 6 3.5716 -0.7873 -1.1980 8 6 2.0419 -0.7253 -1.2483 9 1 1.6368 -1.7369 -1.2757 10 6 1.6079 0.0252 -2.4809 11 8 0.9490 1.0324 -2.3743 12 8 1.9532 -0.4253 -3.6973 13 6 1.5009 0.3484 -4.8397 14 6 1.9881 -0.3145 -6.1297 15 8 1.3686 -1.5946 -6.2709 16 6 1.7571 -2.3015 -7.4504 17 6 1.0480 -3.6303 -7.4961 18 1 0.3682 -3.9073 -6.7039 19 6 1.2670 -4.4927 -8.5494 20 7 2.0952 -4.1558 -9.5138 21 14 0.3875 -6.1397 -8.6065 22 1 -1.0806 -5.9165 -8.6249 23 1 0.7519 -6.9373 -7.4081 24 1 0.7914 -6.8743 -9.8323 25 1 -0.3633 -1.0275 0.0028 26 1 -0.3633 0.5164 0.8886 27 1 -0.3633 0.5115 -0.8914 28 1 1.6431 -1.7392 1.2678 29 1 1.7158 -0.1885 2.1389 30 1 3.6314 -2.5060 0.1009 31 1 5.0925 -1.4907 0.1572 32 1 3.9417 -1.3502 -2.0549 33 1 3.9781 0.2239 -1.2222 34 1 1.9039 1.3591 -4.7764 35 1 0.4117 0.3908 -4.8415 36 1 3.0704 -0.4372 -6.0889 37 1 1.7253 0.3122 -6.9819 38 1 2.8347 -2.4653 -7.4374 39 1 1.4894 -1.7158 -8.3298 40 1 2.5517 -3.3003 -9.4844 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815238707.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:41 Heat of formation + Delta-G solvation = -222.420277 kcal Electronic energy + Delta-G solvation = -21279.329178 eV Core-core repulsion = 17864.805918 eV Total energy + Delta-G solvation = -3414.523260 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.01493 -40.16151 -38.92420 -37.63646 -35.45972 -35.27530 -33.33735 -31.67141 -28.72277 -28.13763 -26.96462 -24.80721 -24.03555 -23.35063 -22.58011 -21.00365 -19.25736 -18.96739 -18.14383 -17.82955 -17.20780 -16.96024 -16.69976 -16.34004 -15.79205 -15.63347 -15.41721 -15.36831 -14.83320 -14.60602 -14.21021 -13.85504 -13.59525 -13.40387 -13.17460 -13.06336 -12.89736 -12.56043 -12.54375 -12.27829 -12.08771 -11.90551 -11.80796 -11.74824 -11.59684 -11.22485 -10.92649 -10.87112 -10.52182 -10.41681 -8.85176 -6.56646 1.04267 1.52907 1.54633 1.61369 1.82829 2.47645 2.87953 2.92264 3.01922 3.33620 3.53196 3.58047 3.80486 3.83217 3.97849 4.03529 4.20203 4.27328 4.32380 4.37534 4.41970 4.48171 4.52559 4.57736 4.61488 4.72248 4.78088 4.85905 4.88777 4.99194 5.03031 5.20051 5.22829 5.45830 5.62787 5.88806 6.20348 6.30486 6.56453 6.62585 7.23733 8.56362 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.022181 B = 0.003560 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.018378 B = 7863.321019 C = 8281.190684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.104 4.104 3 H 0.074 0.926 4 C 0.068 3.932 5 O -0.398 6.398 6 C 0.063 3.937 7 C -0.145 4.145 8 C -0.080 4.080 9 H 0.120 0.880 10 C 0.464 3.536 11 O -0.527 6.527 12 O -0.358 6.358 13 C 0.078 3.922 14 C 0.052 3.948 15 O -0.403 6.403 16 C 0.195 3.805 17 C -0.627 4.627 18 H 0.052 0.948 19 C -0.026 4.026 20 N -0.927 5.927 21 Si 1.127 2.873 22 H -0.268 1.268 23 H -0.266 1.266 24 H -0.275 1.275 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.115 0.885 30 H 0.068 0.932 31 H 0.115 0.885 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.108 0.892 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.082 0.918 38 H -0.013 1.013 39 H -0.012 1.012 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.694 7.532 20.633 22.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.123 4.123 3 H 0.092 0.908 4 C -0.008 4.008 5 O -0.316 6.316 6 C -0.014 4.014 7 C -0.183 4.183 8 C -0.099 4.099 9 H 0.137 0.863 10 C 0.309 3.691 11 O -0.417 6.417 12 O -0.274 6.274 13 C 0.004 3.996 14 C -0.025 4.025 15 O -0.323 6.323 16 C 0.120 3.880 17 C -0.665 4.665 18 H 0.071 0.929 19 C -0.224 4.224 20 N -0.563 5.563 21 Si 0.946 3.054 22 H -0.193 1.193 23 H -0.191 1.191 24 H -0.200 1.200 25 H 0.081 0.919 26 H 0.095 0.905 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.133 0.867 30 H 0.086 0.914 31 H 0.133 0.867 32 H 0.108 0.892 33 H 0.090 0.910 34 H 0.126 0.874 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.005 0.995 39 H 0.006 0.994 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.320 6.497 20.006 21.076 hybrid contribution 0.197 1.995 -0.130 2.008 sum 1.518 8.491 19.877 21.668 Atomic orbital electron populations 1.21903 0.93557 1.02572 1.03149 1.21659 0.97324 1.00120 0.93198 0.90764 1.22789 0.80288 1.00640 0.97112 1.87924 1.21106 1.76717 1.45892 1.22714 1.00494 0.94814 0.83339 1.22211 0.91733 1.03259 1.01061 1.21358 0.98995 1.00874 0.88677 0.86265 1.24222 0.76092 0.83480 0.85335 1.90590 1.37455 1.26204 1.87470 1.86596 1.70844 1.54462 1.15505 1.23152 1.00420 0.94485 0.81514 1.22695 0.97819 0.86086 0.95880 1.87885 1.68876 1.30592 1.44926 1.20011 0.93679 0.91610 0.82703 1.22269 1.29956 1.03087 1.11162 0.92933 1.27587 0.96313 1.07493 0.91003 1.70930 1.27412 1.23961 1.34044 0.82833 0.75375 0.70077 0.77141 1.19298 1.19131 1.20028 0.91850 0.90528 0.92949 0.91377 0.86722 0.91402 0.86664 0.89213 0.90951 0.87370 0.91166 0.92338 0.89984 0.99548 0.99414 0.93396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 8.92 71.98 0.64 -2.24 16 2 C -0.10 -1.96 2.05 -10.70 -0.02 -1.98 16 3 H 0.07 1.60 8.03 -2.39 -0.02 1.58 16 4 C 0.07 1.01 6.13 72.02 0.44 1.45 16 5 O -0.40 -7.24 10.76 -148.98 -1.60 -8.84 16 6 C 0.06 0.96 6.84 72.01 0.49 1.45 16 7 C -0.14 -2.69 5.35 30.68 0.16 -2.53 16 8 C -0.08 -1.72 2.22 -11.42 -0.03 -1.75 16 9 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 10 C 0.46 13.34 6.99 71.24 0.50 13.84 16 11 O -0.53 -16.78 13.62 21.96 0.30 -16.48 16 12 O -0.36 -11.69 10.12 -48.79 -0.49 -12.19 16 13 C 0.08 2.41 5.85 71.98 0.42 2.83 16 14 C 0.05 1.86 6.33 71.98 0.46 2.32 16 15 O -0.40 -19.81 10.30 -145.57 -1.50 -21.31 16 16 C 0.20 10.79 5.00 71.23 0.36 11.14 16 17 C -0.63 -37.71 9.43 25.60 0.24 -37.47 16 18 H 0.05 3.17 7.81 -2.91 -0.02 3.15 16 19 C -0.03 -1.52 5.46 84.66 0.46 -1.06 16 20 N -0.93 -56.77 13.65 21.45 0.29 -56.48 16 21 Si 1.13 49.86 29.90 68.60 2.05 51.92 16 22 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 23 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 24 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 25 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 27 H 0.05 1.29 5.80 -2.38 -0.01 1.27 16 28 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 34 H 0.11 2.71 8.13 -2.39 -0.02 2.69 16 35 H 0.07 2.27 8.13 -2.39 -0.02 2.25 16 36 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 38 H -0.01 -0.74 8.01 -2.39 -0.02 -0.76 16 39 H -0.01 -0.66 8.01 -2.39 -0.02 -0.68 16 40 H 0.26 15.78 7.22 -92.70 -0.67 15.12 16 Total: -1.00 -72.18 330.95 4.28 -67.90 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: 1.10 Total: 9.48 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: 4.13 Total: -13.99 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: 0.29 Total: -56.48 kcal Atomic # 8 Polarization: -55.53 SS G_CDS: -3.30 Total: -58.82 kcal Atomic # 14 Polarization: 49.86 SS G_CDS: 2.05 Total: 51.92 kcal Total: -72.18 4.28 -67.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815238707.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.518 kcal (2) G-P(sol) polarization free energy of solvation -72.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds