Wall clock time and date at job start Mon Mar 30 2020 05:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99913 * 2 1 4 4 H 1.09004 * 109.57383 * 330.16239 * 3 2 1 5 5 C 1.53095 * 109.52018 * 90.31613 * 3 2 1 6 6 O 1.42910 * 109.41337 * 62.29739 * 5 3 2 7 7 C 1.42902 * 114.09650 * 61.15575 * 6 5 3 8 8 C 1.53093 * 109.41910 * 298.84413 * 7 6 5 9 9 C 1.53174 * 109.52386 * 210.00185 * 3 2 1 10 10 H 1.09002 * 109.54391 * 177.21048 * 9 3 2 11 11 C 1.53003 * 109.61696 * 56.98711 * 9 3 2 12 12 C 1.50699 * 109.47346 * 175.22150 * 11 9 3 13 13 O 1.20825 * 119.99830 * 359.97438 * 12 11 9 14 14 O 1.34225 * 120.00243 * 180.02562 * 12 11 9 15 15 C 1.45195 * 117.00241 * 180.02562 * 14 12 11 16 16 C 1.53005 * 109.46992 * 179.97438 * 15 14 12 17 17 C 1.50704 * 109.46534 * 179.97438 * 16 15 14 18 18 H 1.07991 * 120.00433 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99423 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00226 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99931 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47226 * 60.00103 * 21 19 17 23 23 H 1.48490 * 109.47472 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47163 * 300.00297 * 21 19 17 25 25 H 1.08998 * 109.47739 * 59.99816 * 1 2 3 26 26 H 1.09001 * 109.46875 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47137 * 299.99117 * 1 2 3 28 28 H 1.08998 * 109.48473 * 302.31787 * 5 3 2 29 29 H 1.08998 * 109.49081 * 182.28681 * 5 3 2 30 30 H 1.08997 * 109.48292 * 178.85819 * 7 6 5 31 31 H 1.09005 * 109.48948 * 58.82779 * 7 6 5 32 32 H 1.09003 * 109.51855 * 297.70418 * 8 7 6 33 33 H 1.08993 * 109.52292 * 177.51569 * 8 7 6 34 34 H 1.08999 * 109.47206 * 295.22512 * 11 9 3 35 35 H 1.09001 * 109.46515 * 55.22145 * 11 9 3 36 36 H 1.09001 * 109.46856 * 299.99661 * 15 14 12 37 37 H 1.09001 * 109.46920 * 59.99869 * 15 14 12 38 38 H 1.09001 * 109.47094 * 299.99577 * 16 15 14 39 39 H 1.09001 * 109.47345 * 60.00191 * 16 15 14 40 40 H 0.97002 * 120.00371 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 2.0014 -0.5110 5 6 2.2255 1.7696 1.4429 6 8 3.1434 0.8882 2.0934 7 6 4.4381 0.8451 1.4901 8 6 4.3116 0.3440 0.0490 9 6 3.3606 1.2646 -0.7219 10 1 3.7812 2.2693 -0.7656 11 6 3.1680 0.7282 -2.1418 12 6 4.4757 0.7992 -2.8873 13 8 5.4606 1.2346 -2.3394 14 8 4.5461 0.3796 -4.1604 15 6 5.8380 0.4768 -4.8160 16 6 5.7228 -0.0449 -6.2497 17 6 7.0635 0.0567 -6.9303 18 1 7.9128 0.4532 -6.3939 19 6 7.2060 -0.3577 -8.2377 20 7 6.1719 -0.8410 -8.8908 21 14 8.8677 -0.2312 -9.0817 22 1 9.8640 -1.0429 -8.3374 23 1 8.7560 -0.7376 -10.4731 24 1 9.3040 1.1880 -9.1055 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.2737 1.7595 1.9739 29 1 2.6311 2.7813 1.4429 30 1 5.0801 0.1693 2.0549 31 1 4.8729 1.8447 1.4904 32 1 3.9148 -0.6712 0.0500 33 1 5.2922 0.3523 -0.4269 34 1 2.8313 -0.3075 -2.0963 35 1 2.4214 1.3305 -2.6595 36 1 6.1594 1.5182 -4.8327 37 1 6.5683 -0.1203 -4.2700 38 1 5.4015 -1.0863 -6.2327 39 1 4.9923 0.5519 -6.7960 40 1 6.2721 -1.1322 -9.8106 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835264011.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:32 Heat of formation + Delta-G solvation = -196.676437 kcal Electronic energy + Delta-G solvation = -21299.510508 eV Core-core repulsion = 17886.103585 eV Total energy + Delta-G solvation = -3413.406924 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.53171 -39.52570 -37.18260 -36.30105 -34.26994 -33.34684 -30.74758 -30.44507 -29.09311 -26.83050 -25.22960 -23.82759 -23.55869 -21.14189 -20.50028 -19.95059 -17.46721 -16.87738 -16.61097 -16.32350 -16.21060 -15.88110 -15.69753 -15.42639 -14.93797 -14.48987 -14.16695 -13.91529 -13.43389 -12.97435 -12.74985 -12.57878 -12.32997 -12.31146 -11.82645 -11.56835 -11.25951 -11.17879 -11.04699 -10.95209 -10.71776 -10.67842 -10.52190 -10.24783 -10.10482 -9.63595 -9.62261 -9.34240 -9.26205 -8.44603 -6.10737 -4.15320 2.59136 3.17443 3.29639 3.33755 3.37511 3.41602 3.80321 4.36936 4.43021 4.47602 4.64061 4.68721 4.97083 5.07152 5.09473 5.16487 5.19253 5.24126 5.25644 5.34448 5.40832 5.46322 5.50812 5.61851 5.77958 5.84997 6.02668 6.09268 6.10919 6.26348 6.63845 6.83581 7.03659 7.10724 7.55699 7.62098 7.86456 8.19528 8.27795 8.90085 9.49041 11.00735 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.038377 B = 0.003142 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.436961 B = 8909.057456 C = 9428.787976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.368 6.368 3 C 0.058 3.942 4 H 0.072 0.928 5 C 0.043 3.957 6 O -0.375 6.375 7 C 0.062 3.938 8 C -0.155 4.155 9 C -0.073 4.073 10 H 0.092 0.908 11 C -0.108 4.108 12 C 0.456 3.544 13 O -0.519 6.519 14 O -0.358 6.358 15 C 0.075 3.925 16 C 0.024 3.976 17 C -0.528 4.528 18 H 0.059 0.941 19 C 0.061 3.939 20 N -0.890 5.890 21 Si 0.900 3.100 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.275 1.275 25 H 0.042 0.958 26 H 0.086 0.914 27 H 0.039 0.961 28 H 0.093 0.907 29 H 0.059 0.941 30 H 0.094 0.906 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.111 0.889 35 H 0.100 0.900 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.028 0.972 39 H 0.028 0.972 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.411 4.715 19.563 23.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.286 6.286 3 C 0.000 4.000 4 H 0.090 0.910 5 C -0.035 4.035 6 O -0.293 6.293 7 C -0.014 4.014 8 C -0.192 4.192 9 C -0.091 4.091 10 H 0.110 0.890 11 C -0.145 4.145 12 C 0.299 3.701 13 O -0.409 6.409 14 O -0.274 6.274 15 C 0.003 3.997 16 C -0.013 4.013 17 C -0.566 4.566 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.529 5.529 21 Si 0.727 3.273 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.201 1.201 25 H 0.060 0.940 26 H 0.105 0.895 27 H 0.057 0.943 28 H 0.111 0.889 29 H 0.077 0.923 30 H 0.112 0.888 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.129 0.871 35 H 0.119 0.881 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.084 4.479 19.659 23.008 hybrid contribution 0.802 0.484 -0.860 1.272 sum -10.282 4.963 18.799 21.994 Atomic orbital electron populations 1.22818 0.81329 1.02950 0.99711 1.88001 1.19228 1.26511 1.94902 1.22847 0.94989 0.85978 0.96190 0.90985 1.23021 0.94310 0.93136 0.92992 1.87941 1.22412 1.65322 1.53643 1.22605 0.84443 1.00708 0.93666 1.22328 1.01401 0.99984 0.95507 1.21128 0.94056 1.01127 0.92790 0.88997 1.21333 0.93583 1.05646 0.93968 1.23551 0.90955 0.74165 0.81409 1.90580 1.38562 1.43227 1.68556 1.86529 1.39839 1.75473 1.25580 1.23620 0.79553 1.01056 0.95492 1.19165 0.98128 0.97462 0.86516 1.20950 0.94864 1.43257 0.97514 0.92321 1.24984 0.97069 0.94858 0.97222 1.69962 1.29857 1.41799 1.11240 0.86527 0.83714 0.78579 0.78447 1.20047 1.21111 1.20074 0.93961 0.89518 0.94283 0.88905 0.92284 0.88785 0.93232 0.90471 0.88875 0.87059 0.88149 0.92397 0.92362 0.95362 0.95411 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.82 101.05 1.09 1.30 16 2 O -0.37 -3.86 9.08 -42.72 -0.39 -4.24 16 3 C 0.06 0.54 2.43 -26.59 -0.06 0.47 16 4 H 0.07 0.52 7.79 -51.93 -0.40 0.12 16 5 C 0.04 0.38 6.49 37.21 0.24 0.62 16 6 O -0.37 -4.34 10.70 -42.72 -0.46 -4.80 16 7 C 0.06 0.67 6.84 37.21 0.25 0.92 16 8 C -0.15 -1.86 4.97 -26.59 -0.13 -1.99 16 9 C -0.07 -0.80 1.75 -90.44 -0.16 -0.96 16 10 H 0.09 1.02 7.96 -51.93 -0.41 0.61 16 11 C -0.11 -1.32 5.05 -27.88 -0.14 -1.46 16 12 C 0.46 7.73 7.70 36.01 0.28 8.01 16 13 O -0.52 -9.72 13.74 -18.75 -0.26 -9.97 16 14 O -0.36 -7.18 10.22 -39.24 -0.40 -7.58 16 15 C 0.08 1.69 5.40 37.16 0.20 1.89 16 16 C 0.02 0.64 5.35 -27.88 -0.15 0.49 16 17 C -0.53 -14.93 9.11 -34.44 -0.31 -15.25 16 18 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 19 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 20 N -0.89 -26.47 13.29 55.43 0.74 -25.74 16 21 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 25 H 0.04 0.27 8.09 -51.93 -0.42 -0.15 16 26 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.04 0.24 7.86 -51.93 -0.41 -0.17 16 28 H 0.09 0.69 7.86 -51.93 -0.41 0.28 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.99 7.83 -51.93 -0.41 0.58 16 33 H 0.09 1.29 6.05 -51.93 -0.31 0.98 16 34 H 0.11 1.35 7.78 -51.93 -0.40 0.94 16 35 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 37 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 38 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 329.78 15.07 4.97 4.97 Total: -1.00 -32.12 329.78 -6.33 -38.45 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -6.52 Total: -3.19 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: 1.01 Total: -4.32 kcal Atomic # 7 Polarization: -26.47 SS G_CDS: 0.74 Total: -25.74 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -1.50 Total: -26.60 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.12 -6.33 -38.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835264011.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.227 kcal (2) G-P(sol) polarization free energy of solvation -32.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds