Wall clock time and date at job start Mon Mar 30 2020 05:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99913 * 2 1 4 4 H 1.09004 * 109.57383 * 330.16239 * 3 2 1 5 5 C 1.53095 * 109.52018 * 90.31613 * 3 2 1 6 6 O 1.42910 * 109.41337 * 62.29739 * 5 3 2 7 7 C 1.42902 * 114.09650 * 61.15575 * 6 5 3 8 8 C 1.53093 * 109.41910 * 298.84413 * 7 6 5 9 9 C 1.53174 * 109.52386 * 210.00185 * 3 2 1 10 10 H 1.09002 * 109.54391 * 177.21048 * 9 3 2 11 11 C 1.53003 * 109.61696 * 56.98711 * 9 3 2 12 12 C 1.50699 * 109.47346 * 175.22150 * 11 9 3 13 13 O 1.20825 * 119.99830 * 359.97438 * 12 11 9 14 14 O 1.34225 * 120.00243 * 180.02562 * 12 11 9 15 15 C 1.45195 * 117.00241 * 180.02562 * 14 12 11 16 16 C 1.53005 * 109.46992 * 179.97438 * 15 14 12 17 17 C 1.50704 * 109.46534 * 179.97438 * 16 15 14 18 18 H 1.07991 * 120.00433 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99423 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00226 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99931 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47226 * 60.00103 * 21 19 17 23 23 H 1.48490 * 109.47472 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47163 * 300.00297 * 21 19 17 25 25 H 1.08998 * 109.47739 * 59.99816 * 1 2 3 26 26 H 1.09001 * 109.46875 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47137 * 299.99117 * 1 2 3 28 28 H 1.08998 * 109.48473 * 302.31787 * 5 3 2 29 29 H 1.08998 * 109.49081 * 182.28681 * 5 3 2 30 30 H 1.08997 * 109.48292 * 178.85819 * 7 6 5 31 31 H 1.09005 * 109.48948 * 58.82779 * 7 6 5 32 32 H 1.09003 * 109.51855 * 297.70418 * 8 7 6 33 33 H 1.08993 * 109.52292 * 177.51569 * 8 7 6 34 34 H 1.08999 * 109.47206 * 295.22512 * 11 9 3 35 35 H 1.09001 * 109.46515 * 55.22145 * 11 9 3 36 36 H 1.09001 * 109.46856 * 299.99661 * 15 14 12 37 37 H 1.09001 * 109.46920 * 59.99869 * 15 14 12 38 38 H 1.09001 * 109.47094 * 299.99577 * 16 15 14 39 39 H 1.09001 * 109.47345 * 60.00191 * 16 15 14 40 40 H 0.97002 * 120.00371 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 2.0014 -0.5110 5 6 2.2255 1.7696 1.4429 6 8 3.1434 0.8882 2.0934 7 6 4.4381 0.8451 1.4901 8 6 4.3116 0.3440 0.0490 9 6 3.3606 1.2646 -0.7219 10 1 3.7812 2.2693 -0.7656 11 6 3.1680 0.7282 -2.1418 12 6 4.4757 0.7992 -2.8873 13 8 5.4606 1.2346 -2.3394 14 8 4.5461 0.3796 -4.1604 15 6 5.8380 0.4768 -4.8160 16 6 5.7228 -0.0449 -6.2497 17 6 7.0635 0.0567 -6.9303 18 1 7.9128 0.4532 -6.3939 19 6 7.2060 -0.3577 -8.2377 20 7 6.1719 -0.8410 -8.8908 21 14 8.8677 -0.2312 -9.0817 22 1 9.8640 -1.0429 -8.3374 23 1 8.7560 -0.7376 -10.4731 24 1 9.3040 1.1880 -9.1055 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.2737 1.7595 1.9739 29 1 2.6311 2.7813 1.4429 30 1 5.0801 0.1693 2.0549 31 1 4.8729 1.8447 1.4904 32 1 3.9148 -0.6712 0.0500 33 1 5.2922 0.3523 -0.4269 34 1 2.8313 -0.3075 -2.0963 35 1 2.4214 1.3305 -2.6595 36 1 6.1594 1.5182 -4.8327 37 1 6.5683 -0.1203 -4.2700 38 1 5.4015 -1.0863 -6.2327 39 1 4.9923 0.5519 -6.7960 40 1 6.2721 -1.1322 -9.8106 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835264011.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:31 Heat of formation + Delta-G solvation = -216.842560 kcal Electronic energy + Delta-G solvation = -21300.384977 eV Core-core repulsion = 17886.103585 eV Total energy + Delta-G solvation = -3414.281392 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.71391 -40.60211 -37.91680 -37.81819 -35.45643 -35.25369 -32.42205 -31.49221 -30.19268 -27.40358 -27.11305 -24.96489 -24.37990 -22.99966 -21.82823 -20.88632 -19.00873 -18.19500 -17.69409 -17.59377 -17.42708 -17.25056 -16.56305 -16.46674 -16.32854 -15.74097 -15.32881 -14.86182 -14.58812 -14.39705 -14.18194 -13.87366 -13.50607 -13.21619 -13.11048 -12.97215 -12.71885 -12.58283 -12.52123 -12.21753 -12.09982 -11.88458 -11.74558 -11.51188 -11.45264 -11.31976 -11.15465 -10.99284 -10.61950 -10.06432 -8.27983 -6.41658 1.21307 1.40312 1.44080 1.51948 1.79065 2.39660 2.74429 3.06227 3.07598 3.55787 3.62544 3.75469 3.87524 4.04971 4.21060 4.25895 4.30333 4.33812 4.39109 4.49210 4.56130 4.56745 4.64659 4.68529 4.72829 4.77244 4.85195 4.96592 5.01906 5.09713 5.24785 5.31937 5.45123 5.59733 5.75352 6.05260 6.14321 6.41457 6.70867 6.78316 7.28263 8.84466 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.038377 B = 0.003142 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.436961 B = 8909.057456 C = 9428.787976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.394 6.394 3 C 0.062 3.938 4 H 0.099 0.901 5 C 0.037 3.963 6 O -0.393 6.393 7 C 0.065 3.935 8 C -0.152 4.152 9 C -0.072 4.072 10 H 0.094 0.906 11 C -0.097 4.097 12 C 0.452 3.548 13 O -0.536 6.536 14 O -0.370 6.370 15 C 0.091 3.909 16 C 0.030 3.970 17 C -0.553 4.553 18 H 0.065 0.935 19 C 0.006 3.994 20 N -0.927 5.927 21 Si 0.974 3.026 22 H -0.266 1.266 23 H -0.279 1.279 24 H -0.265 1.265 25 H 0.054 0.946 26 H 0.088 0.912 27 H 0.051 0.949 28 H 0.109 0.891 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.115 0.885 35 H 0.127 0.873 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.005 0.995 39 H 0.006 0.994 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.703 5.700 20.289 24.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.313 6.313 3 C 0.004 3.996 4 H 0.117 0.883 5 C -0.040 4.040 6 O -0.312 6.312 7 C -0.012 4.012 8 C -0.190 4.190 9 C -0.091 4.091 10 H 0.112 0.888 11 C -0.134 4.134 12 C 0.298 3.702 13 O -0.427 6.427 14 O -0.286 6.286 15 C 0.018 3.982 16 C -0.007 4.007 17 C -0.591 4.591 18 H 0.083 0.917 19 C -0.193 4.193 20 N -0.566 5.566 21 Si 0.797 3.203 22 H -0.191 1.191 23 H -0.204 1.204 24 H -0.190 1.190 25 H 0.072 0.928 26 H 0.107 0.893 27 H 0.070 0.930 28 H 0.127 0.873 29 H 0.093 0.907 30 H 0.117 0.883 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.133 0.867 35 H 0.145 0.855 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.023 0.977 39 H 0.025 0.975 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.392 5.472 20.411 24.007 hybrid contribution 0.807 0.166 -1.024 1.314 sum -10.585 5.638 19.387 22.797 Atomic orbital electron populations 1.22978 0.79834 1.03595 1.00912 1.87971 1.20961 1.27288 1.95070 1.22856 0.94114 0.86249 0.96391 0.88350 1.23249 0.94619 0.93395 0.92755 1.87914 1.22841 1.66221 1.54261 1.22590 0.84631 1.01253 0.92704 1.22241 1.00341 0.99789 0.96610 1.21161 0.95320 1.00692 0.91884 0.88776 1.21459 0.91169 1.06567 0.94229 1.24513 0.92512 0.73041 0.80167 1.90575 1.39698 1.43945 1.68475 1.86524 1.38290 1.76354 1.27459 1.23114 0.80795 1.00718 0.93577 1.18980 0.97077 0.95753 0.88889 1.21360 0.95720 1.43654 0.98320 0.91690 1.25977 1.01308 0.94087 0.97912 1.70087 1.32294 1.42455 1.11757 0.85370 0.78523 0.79101 0.77283 1.19070 1.20428 1.18981 0.92769 0.89303 0.93008 0.87286 0.90738 0.88330 0.92365 0.91717 0.91170 0.86661 0.85459 0.92164 0.92446 0.97703 0.97520 0.92292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.82 113.37 1.23 1.51 16 2 O -0.39 -7.45 9.08 -141.82 -1.29 -8.74 16 3 C 0.06 0.98 2.43 30.68 0.07 1.06 16 4 H 0.10 1.05 7.79 -2.39 -0.02 1.03 16 5 C 0.04 0.56 6.49 72.01 0.47 1.02 16 6 O -0.39 -8.50 10.70 -141.82 -1.52 -10.02 16 7 C 0.06 1.32 6.84 72.01 0.49 1.82 16 8 C -0.15 -3.60 4.97 30.69 0.15 -3.45 16 9 C -0.07 -1.48 1.75 -10.67 -0.02 -1.50 16 10 H 0.09 1.91 7.96 -2.39 -0.02 1.89 16 11 C -0.10 -2.23 5.05 29.85 0.15 -2.08 16 12 C 0.45 15.15 7.70 71.24 0.55 15.70 16 13 O -0.54 -19.99 13.74 21.97 0.30 -19.69 16 14 O -0.37 -14.90 10.22 -51.37 -0.52 -15.42 16 15 C 0.09 4.15 5.40 71.98 0.39 4.54 16 16 C 0.03 1.64 5.35 29.85 0.16 1.80 16 17 C -0.55 -31.63 9.11 25.60 0.23 -31.39 16 18 H 0.06 3.54 7.74 -2.92 -0.02 3.52 16 19 C 0.01 0.36 5.46 84.66 0.46 0.82 16 20 N -0.93 -55.80 13.29 21.45 0.28 -55.52 16 21 Si 0.97 43.70 29.54 68.60 2.03 45.73 16 22 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 23 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 24 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 25 H 0.05 0.53 8.09 -2.39 -0.02 0.51 16 26 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.05 0.50 7.86 -2.39 -0.02 0.48 16 28 H 0.11 1.29 7.86 -2.39 -0.02 1.28 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.89 16 30 H 0.10 1.85 8.14 -2.39 -0.02 1.84 16 31 H 0.06 1.07 8.14 -2.38 -0.02 1.06 16 32 H 0.06 1.66 7.83 -2.39 -0.02 1.64 16 33 H 0.07 1.97 6.05 -2.39 -0.01 1.96 16 34 H 0.12 2.64 7.78 -2.39 -0.02 2.62 16 35 H 0.13 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.06 2.69 8.13 -2.39 -0.02 2.67 16 37 H 0.06 2.59 8.13 -2.39 -0.02 2.57 16 38 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 39 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 40 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -69.25 329.78 4.63 -64.62 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: 1.01 Total: 9.20 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: 4.34 Total: -10.16 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: 0.28 Total: -55.52 kcal Atomic # 8 Polarization: -50.84 SS G_CDS: -3.03 Total: -53.87 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -69.25 4.63 -64.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835264011.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.223 kcal (2) G-P(sol) polarization free energy of solvation -69.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds