Wall clock time and date at job start Mon Mar 30 2020 05:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47286 * 2 1 4 4 H 1.09001 * 109.47043 * 54.99556 * 3 2 1 5 5 C 1.50700 * 109.47454 * 175.00081 * 3 2 1 6 6 H 1.08000 * 119.99759 * 119.99790 * 5 3 2 7 7 C 1.37871 * 120.00011 * 299.99605 * 5 3 2 8 8 N 1.31513 * 120.00074 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00136 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46966 * 90.00659 * 9 7 5 11 11 H 1.48498 * 109.47033 * 210.00335 * 9 7 5 12 12 H 1.48498 * 109.47028 * 330.00226 * 9 7 5 13 13 O 1.45204 * 109.47217 * 295.00295 * 3 2 1 14 14 C 1.34229 * 117.00156 * 89.99510 * 13 3 2 15 15 O 1.20823 * 119.99878 * 0.02562 * 14 13 3 16 16 C 1.50701 * 120.00036 * 180.02562 * 14 13 3 17 17 C 1.53006 * 110.45727 * 59.29799 * 16 14 13 18 18 O 1.42898 * 109.46975 * 298.85036 * 17 16 14 19 19 C 1.42901 * 113.99679 * 179.97438 * 18 17 16 20 20 C 1.54500 * 110.62873 * 181.98271 * 16 14 13 21 21 C 1.54480 * 104.06253 * 118.70230 * 20 16 14 22 22 O 1.44430 * 104.80215 * 336.02112 * 21 20 16 23 23 C 1.44423 * 105.27221 * 40.51235 * 22 21 20 24 24 H 1.08998 * 109.46753 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46603 * 299.99851 * 1 2 3 26 26 H 1.08996 * 109.46640 * 59.99762 * 1 2 3 27 27 H 1.08997 * 109.47485 * 240.00315 * 2 1 3 28 28 H 1.09003 * 109.47342 * 119.99742 * 2 1 3 29 29 H 0.97002 * 120.00201 * 180.02562 * 8 7 5 30 30 H 1.08997 * 109.46759 * 58.84848 * 17 16 14 31 31 H 1.09000 * 109.47239 * 178.84781 * 17 16 14 32 32 H 1.09001 * 109.47399 * 179.97438 * 19 18 17 33 33 H 1.08995 * 109.47432 * 300.00344 * 19 18 17 34 34 H 1.08999 * 109.47062 * 60.00375 * 19 18 17 35 35 H 1.09001 * 110.51649 * 237.34479 * 20 16 14 36 36 H 1.08998 * 110.51295 * 0.06047 * 20 16 14 37 37 H 1.08995 * 110.37745 * 217.19287 * 21 20 16 38 38 H 1.09002 * 110.46854 * 94.90134 * 21 20 16 39 39 H 1.09003 * 110.37195 * 200.65421 * 23 22 21 40 40 H 1.09004 * 110.46434 * 78.36720 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4443 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1433 0.8785 1.2279 8 7 3.4063 0.3368 2.1728 9 14 6.0051 0.8802 1.3811 10 1 6.4428 2.1130 2.0836 11 1 6.4391 -0.3109 2.1545 12 1 6.6132 0.8396 0.0269 13 8 1.6559 2.0917 -1.2407 14 6 0.4727 2.7255 -1.2559 15 8 -0.2188 2.7377 -0.2653 16 6 0.0069 3.4217 -2.5087 17 6 -0.0951 2.4270 -3.6669 18 8 1.1925 1.8640 -3.9260 19 6 1.2078 0.9163 -4.9954 20 6 -1.3519 4.1176 -2.2715 21 6 -1.0559 5.6134 -2.5196 22 8 0.3621 5.7530 -2.2834 23 6 0.9632 4.5792 -2.8721 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8294 -0.0610 2.9499 30 1 -0.7927 1.6322 -3.4027 31 1 -0.4524 2.9426 -4.5583 32 1 2.2204 0.5358 -5.1294 33 1 0.5373 0.0902 -4.7586 34 1 0.8775 1.4002 -5.9146 35 1 -2.0965 3.7532 -2.9793 36 1 -1.6882 3.9597 -1.2468 37 1 -1.6195 6.2326 -1.8218 38 1 -1.2980 5.8845 -3.5472 39 1 1.9507 4.4039 -2.4451 40 1 1.0326 4.6886 -3.9544 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835340587.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:09 Heat of formation + Delta-G solvation = -181.191493 kcal Electronic energy + Delta-G solvation = -22928.576903 eV Core-core repulsion = 19515.841457 eV Total energy + Delta-G solvation = -3412.735446 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.52187 -38.57472 -37.46680 -35.70139 -33.46781 -32.90549 -31.28327 -29.63876 -27.22816 -26.92191 -25.09620 -23.77420 -22.93458 -22.27080 -20.02196 -18.97917 -17.28533 -16.55692 -16.44072 -16.26164 -15.78511 -15.71267 -15.02694 -14.83055 -14.75617 -14.37723 -13.73596 -12.96918 -12.93608 -12.68409 -12.57936 -11.97641 -11.81284 -11.56796 -11.49028 -11.38850 -11.22440 -11.10452 -10.90097 -10.86251 -10.76665 -10.58373 -10.21508 -9.89312 -9.71789 -9.63768 -9.38072 -9.22431 -8.72062 -8.38904 -6.12465 -4.18440 2.98278 3.28589 3.33720 3.37650 3.62229 3.73327 4.04944 4.37482 4.50478 4.78960 4.95969 5.04171 5.14160 5.19442 5.22875 5.38128 5.40102 5.47846 5.54806 5.64139 5.74456 5.80652 5.96438 6.03748 6.15523 6.25296 6.32605 6.49676 6.78724 6.92245 7.01240 7.21732 7.22414 7.33218 7.68518 7.80832 8.01378 8.23551 8.72332 8.98669 9.46434 10.94519 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.019148 B = 0.006158 C = 0.005976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.939926 B = 4545.620390 C = 4684.415321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.134 4.134 3 C 0.220 3.780 4 H 0.044 0.956 5 C -0.516 4.516 6 H 0.069 0.931 7 C 0.062 3.938 8 N -0.890 5.890 9 Si 0.909 3.091 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.271 1.271 13 O -0.331 6.331 14 C 0.471 3.529 15 O -0.516 6.516 16 C -0.090 4.090 17 C 0.081 3.919 18 O -0.363 6.363 19 C 0.033 3.967 20 C -0.145 4.145 21 C 0.047 3.953 22 O -0.371 6.371 23 C 0.067 3.933 24 H 0.031 0.969 25 H 0.052 0.948 26 H 0.029 0.971 27 H 0.041 0.959 28 H 0.107 0.893 29 H 0.265 0.735 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.039 0.961 34 H 0.035 0.965 35 H 0.084 0.916 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.059 0.941 39 H 0.110 0.890 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.536 4.104 -13.295 16.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.171 4.171 3 C 0.168 3.832 4 H 0.062 0.938 5 C -0.554 4.554 6 H 0.087 0.913 7 C -0.140 4.140 8 N -0.528 5.528 9 Si 0.736 3.264 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.246 6.246 14 C 0.314 3.686 15 O -0.407 6.407 16 C -0.091 4.091 17 C 0.004 3.996 18 O -0.281 6.281 19 C -0.064 4.064 20 C -0.182 4.182 21 C -0.030 4.030 22 O -0.289 6.289 23 C -0.010 4.010 24 H 0.050 0.950 25 H 0.071 0.929 26 H 0.049 0.951 27 H 0.060 0.940 28 H 0.125 0.875 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.107 0.893 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.102 0.898 36 H 0.125 0.875 37 H 0.112 0.888 38 H 0.078 0.922 39 H 0.128 0.872 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.389 4.196 -12.581 15.693 hybrid contribution 0.456 -0.506 -0.053 0.683 sum -7.934 3.689 -12.634 15.368 Atomic orbital electron populations 1.21846 0.98608 0.98772 1.00583 1.21989 0.92421 0.99516 1.03221 1.20654 0.94983 0.88725 0.78877 0.93807 1.21050 0.89763 1.38536 1.06056 0.91293 1.24874 0.99110 0.94876 0.95130 1.69893 1.35293 1.38135 1.09493 0.86309 0.84113 0.77625 0.78314 1.20442 1.21031 1.19593 1.86560 1.33232 1.61593 1.43225 1.22484 0.81277 0.76656 0.88222 1.90570 1.55863 1.58791 1.35448 1.21879 0.97589 0.96514 0.93147 1.22385 0.86873 0.95131 0.95257 1.88138 1.27873 1.58761 1.53351 1.22730 1.03064 0.91701 0.88866 1.23052 0.94608 0.94863 1.05715 1.23417 0.83228 0.95607 1.00777 1.89183 1.18694 1.42026 1.79025 1.23411 0.97571 0.81546 0.98495 0.94982 0.92895 0.95141 0.94001 0.87478 0.92502 0.92709 0.92275 0.89290 0.94262 0.94603 0.89784 0.87537 0.88768 0.92246 0.87218 0.90976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.57 37.16 0.32 -2.82 16 2 C -0.13 -3.38 5.49 -26.73 -0.15 -3.53 16 3 C 0.22 5.98 2.25 -27.88 -0.06 5.92 16 4 H 0.04 1.33 7.16 -51.93 -0.37 0.96 16 5 C -0.52 -14.74 8.90 -34.44 -0.31 -15.04 16 6 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 7 C 0.06 1.72 5.29 -17.82 -0.09 1.63 16 8 N -0.89 -25.55 11.29 55.43 0.63 -24.93 16 9 Si 0.91 21.45 29.54 -169.99 -5.02 16.43 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 13 O -0.33 -8.06 8.54 -44.82 -0.38 -8.44 16 14 C 0.47 10.10 4.99 36.01 0.18 10.28 16 15 O -0.52 -12.15 12.44 -18.75 -0.23 -12.38 16 16 C -0.09 -1.43 0.80 -154.09 -0.12 -1.55 16 17 C 0.08 1.09 4.53 37.16 0.17 1.26 16 18 O -0.36 -5.71 9.25 -50.76 -0.47 -6.18 16 19 C 0.03 0.39 11.01 101.05 1.11 1.50 16 20 C -0.14 -1.89 6.32 -25.17 -0.16 -2.04 16 21 C 0.05 0.56 7.63 37.93 0.29 0.85 16 22 O -0.37 -5.92 11.65 -35.23 -0.41 -6.33 16 23 C 0.07 1.03 6.46 37.93 0.25 1.27 16 24 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 1.24 7.80 -51.93 -0.40 0.83 16 26 H 0.03 0.65 6.06 -51.93 -0.31 0.33 16 27 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.11 2.94 5.95 -51.93 -0.31 2.63 16 29 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.08 0.82 7.73 -51.93 -0.40 0.42 16 36 H 0.11 1.62 6.52 -51.93 -0.34 1.28 16 37 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.11 1.93 7.72 -51.93 -0.40 1.53 16 40 H 0.07 0.91 7.87 -51.93 -0.41 0.51 16 LS Contribution 322.46 15.07 4.86 4.86 Total: -1.00 -32.18 322.46 -5.91 -38.09 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -6.30 Total: 1.17 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: 1.42 Total: -2.28 kcal Atomic # 7 Polarization: -25.55 SS G_CDS: 0.63 Total: -24.93 kcal Atomic # 8 Polarization: -31.84 SS G_CDS: -1.50 Total: -33.34 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.18 -5.91 -38.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835340587.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.098 kcal (2) G-P(sol) polarization free energy of solvation -32.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds