Wall clock time and date at job start Mon Mar 30 2020 05:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 114.00022 * 2 1 4 4 H 1.08994 * 109.47443 * 29.99939 * 3 2 1 5 5 C 1.52996 * 109.46977 * 269.99729 * 3 2 1 6 6 O 1.45203 * 109.47034 * 65.00401 * 5 3 2 7 7 C 1.34234 * 117.00028 * 179.97438 * 6 5 3 8 8 O 1.20822 * 120.00136 * 359.97438 * 7 6 5 9 9 C 1.50697 * 119.99749 * 179.97438 * 7 6 5 10 10 H 1.09002 * 109.47120 * 299.99666 * 9 7 6 11 11 C 1.52997 * 109.47466 * 59.99914 * 9 7 6 12 12 C 1.50699 * 109.46956 * 179.97438 * 9 7 6 13 13 H 1.08003 * 120.00271 * 359.97438 * 12 9 7 14 14 C 1.37879 * 120.00161 * 179.97438 * 12 9 7 15 15 N 1.31516 * 120.00079 * 179.97438 * 14 12 9 16 16 Si 1.86795 * 119.99984 * 0.02562 * 14 12 9 17 17 H 1.48498 * 109.47308 * 89.99475 * 16 14 12 18 18 H 1.48501 * 109.47369 * 209.99550 * 16 14 12 19 19 H 1.48502 * 109.47235 * 329.99718 * 16 14 12 20 20 C 1.52998 * 109.46990 * 150.00241 * 3 2 1 21 21 H 1.08999 * 110.75235 * 182.02104 * 20 3 2 22 22 C 1.55310 * 110.85026 * 305.71097 * 20 3 2 23 23 C 1.54939 * 100.94381 * 152.32566 * 22 20 3 24 24 O 1.43654 * 105.13828 * 323.55606 * 23 22 20 25 25 C 1.43233 * 109.96572 * 24.42875 * 24 23 22 26 26 H 1.09004 * 109.47413 * 60.00094 * 1 2 3 27 27 H 1.09000 * 109.47352 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47009 * 300.00060 * 1 2 3 29 29 H 1.09004 * 109.47695 * 305.00140 * 5 3 2 30 30 H 1.09002 * 109.47315 * 185.00103 * 5 3 2 31 31 H 1.09002 * 109.47153 * 59.99773 * 11 9 7 32 32 H 1.09001 * 109.46832 * 299.99964 * 11 9 7 33 33 H 1.09004 * 109.47261 * 179.97438 * 11 9 7 34 34 H 0.96999 * 119.99874 * 180.02562 * 15 14 12 35 35 H 1.09002 * 111.12502 * 270.24748 * 22 20 3 36 36 H 1.09004 * 111.12100 * 34.40395 * 22 20 3 37 37 H 1.09008 * 110.31103 * 204.64285 * 23 22 20 38 38 H 1.09004 * 110.31214 * 82.47338 * 23 22 20 39 39 H 1.09003 * 109.83382 * 238.77119 * 25 24 23 40 40 H 1.09000 * 109.83031 * 117.80120 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2177 1.7713 -1.4425 6 8 0.9280 1.9251 -2.0917 7 6 0.9343 2.3316 -3.3709 8 8 1.9826 2.5521 -3.9296 9 6 -0.3663 2.5129 -4.1103 10 1 -0.9038 1.5651 -4.1378 11 6 -1.2186 3.5619 -3.3933 12 6 -0.0842 2.9721 -5.5176 13 1 0.9349 3.1184 -5.8439 14 6 -1.1272 3.2055 -6.3887 15 7 -0.8810 3.6067 -7.6168 16 14 -2.8898 2.9531 -5.8243 17 1 -3.4122 4.2196 -5.2512 18 1 -3.7278 2.5512 -6.9825 19 1 -2.9308 1.8880 -4.7903 20 6 3.3589 1.2632 0.7212 21 1 3.8049 2.2568 0.7646 22 6 3.2064 0.6584 2.1436 23 6 4.6183 0.0585 2.3610 24 8 5.0166 -0.4396 1.0738 25 6 4.3152 0.2609 0.0399 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 2.8099 1.0318 -1.9816 30 1 2.7414 2.7273 -1.4438 31 1 -0.6811 4.5098 -3.3657 32 1 -1.4226 3.2302 -2.3752 33 1 -2.1591 3.6934 -3.9284 34 1 -1.6148 3.7712 -8.2295 35 1 2.9914 1.4336 2.8791 36 1 2.4424 -0.1189 2.1601 37 1 4.5763 -0.7552 3.0851 38 1 5.3097 0.8308 2.6984 39 1 3.7432 -0.4448 -0.5625 40 1 5.0247 0.7969 -0.5905 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849850433.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:31 Heat of formation + Delta-G solvation = -179.547532 kcal Electronic energy + Delta-G solvation = -21857.595002 eV Core-core repulsion = 18444.930844 eV Total energy + Delta-G solvation = -3412.664159 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.24279 -39.50654 -37.78976 -35.73186 -34.03233 -33.29055 -31.40885 -30.48598 -28.03016 -26.56507 -25.23699 -24.23965 -23.15718 -22.04632 -20.53228 -19.77127 -17.49203 -17.12991 -16.68384 -16.24694 -16.09825 -15.95752 -15.41169 -15.05913 -14.85945 -14.48012 -14.12060 -13.58317 -13.29513 -13.07485 -12.88815 -12.62104 -12.34930 -12.12634 -11.92815 -11.67989 -11.42840 -11.38818 -11.13348 -11.00666 -10.90637 -10.71624 -10.44732 -10.17727 -9.76256 -9.71866 -9.63258 -9.25528 -9.17601 -8.68036 -6.15567 -4.18497 3.10886 3.16974 3.19243 3.27204 3.31721 3.53755 3.77101 4.11138 4.29383 4.51278 4.69480 4.80680 4.98553 5.01397 5.07724 5.13715 5.19895 5.35297 5.39940 5.45995 5.48150 5.58199 5.61266 5.67941 5.76230 5.82240 5.91345 5.98204 6.08961 6.25191 6.35746 6.63721 6.81727 7.01752 7.04434 7.07620 7.44082 8.36110 8.67643 8.99836 9.40971 10.96789 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.037284 B = 0.004065 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.816375 B = 6885.915655 C = 7324.003719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.377 6.377 3 C 0.104 3.896 4 H 0.076 0.924 5 C 0.039 3.961 6 O -0.367 6.367 7 C 0.472 3.528 8 O -0.500 6.500 9 C 0.026 3.974 10 H 0.063 0.937 11 C -0.145 4.145 12 C -0.519 4.519 13 H 0.094 0.906 14 C 0.075 3.925 15 N -0.891 5.891 16 Si 0.884 3.116 17 H -0.276 1.276 18 H -0.293 1.293 19 H -0.265 1.265 20 C -0.119 4.119 21 H 0.099 0.901 22 C -0.147 4.147 23 C 0.052 3.948 24 O -0.384 6.384 25 C 0.056 3.944 26 H 0.063 0.937 27 H 0.082 0.918 28 H 0.037 0.963 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.043 0.957 33 H 0.052 0.948 34 H 0.267 0.733 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.058 0.942 39 H 0.083 0.917 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.854 -5.019 21.133 22.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.296 6.296 3 C 0.046 3.954 4 H 0.094 0.906 5 C -0.036 4.036 6 O -0.285 6.285 7 C 0.315 3.685 8 O -0.386 6.386 9 C 0.006 3.994 10 H 0.081 0.919 11 C -0.202 4.202 12 C -0.557 4.557 13 H 0.112 0.888 14 C -0.127 4.127 15 N -0.528 5.528 16 Si 0.713 3.287 17 H -0.203 1.203 18 H -0.220 1.220 19 H -0.190 1.190 20 C -0.138 4.138 21 H 0.118 0.882 22 C -0.185 4.185 23 C -0.024 4.024 24 O -0.303 6.303 25 C -0.021 4.021 26 H 0.082 0.918 27 H 0.101 0.899 28 H 0.056 0.944 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.100 0.900 36 H 0.109 0.891 37 H 0.102 0.898 38 H 0.076 0.924 39 H 0.101 0.899 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.390 -5.231 20.746 21.841 hybrid contribution -1.200 0.473 0.114 1.294 sum 3.191 -4.758 20.860 21.632 Atomic orbital electron populations 1.22914 0.80216 1.02641 1.01085 1.87859 1.20491 1.26355 1.94857 1.21936 0.94424 0.85900 0.93189 0.90588 1.23544 0.85288 1.01817 0.92927 1.86550 1.33563 1.79679 1.28739 1.24539 0.93699 0.71774 0.78449 1.90551 1.34361 1.46194 1.67456 1.19131 0.87274 0.97895 0.95070 0.91916 1.22093 0.99795 1.00021 0.98328 1.20914 0.96794 1.46160 0.91809 0.88771 1.24920 0.98772 0.94340 0.94711 1.69866 1.32370 1.45301 1.05238 0.86915 0.85103 0.78877 0.77782 1.20257 1.22036 1.18982 1.22835 0.94561 1.00835 0.95577 0.88232 1.23264 0.98557 1.01326 0.95316 1.23339 0.94115 0.98527 0.86451 1.88400 1.65884 1.61464 1.14602 1.23220 0.93776 0.94434 0.90637 0.91849 0.89906 0.94406 0.90680 0.90824 0.92389 0.93839 0.92972 0.92293 0.90014 0.89085 0.89826 0.92363 0.89868 0.91304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.71 101.05 1.08 1.39 16 2 O -0.38 -4.76 8.48 -38.80 -0.33 -5.08 16 3 C 0.10 1.19 2.31 -26.73 -0.06 1.13 16 4 H 0.08 0.79 7.79 -51.93 -0.40 0.39 16 5 C 0.04 0.57 4.82 37.16 0.18 0.75 16 6 O -0.37 -6.55 8.23 -42.03 -0.35 -6.90 16 7 C 0.47 10.45 7.25 36.00 0.26 10.71 16 8 O -0.50 -12.54 15.21 -18.75 -0.29 -12.82 16 9 C 0.03 0.60 2.33 -92.93 -0.22 0.39 16 10 H 0.06 1.43 7.20 -51.93 -0.37 1.06 16 11 C -0.15 -2.98 8.60 37.16 0.32 -2.66 16 12 C -0.52 -14.76 8.95 -34.44 -0.31 -15.07 16 13 H 0.09 3.03 7.00 -52.48 -0.37 2.66 16 14 C 0.08 2.13 5.45 -17.82 -0.10 2.04 16 15 N -0.89 -27.00 13.96 55.43 0.77 -26.22 16 16 Si 0.88 20.84 24.37 -169.99 -4.14 16.70 16 17 H -0.28 -6.26 6.87 56.52 0.39 -5.87 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.26 -5.83 6.53 56.52 0.37 -5.46 16 20 C -0.12 -1.16 2.95 -88.67 -0.26 -1.42 16 21 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 22 C -0.15 -1.22 6.55 -24.48 -0.16 -1.38 16 23 C 0.05 0.46 7.78 38.18 0.30 0.76 16 24 O -0.38 -4.73 11.36 -35.23 -0.40 -5.13 16 25 C 0.06 0.64 6.43 37.88 0.24 0.88 16 26 H 0.06 0.82 6.37 -51.93 -0.33 0.49 16 27 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.04 0.35 8.09 -51.93 -0.42 -0.07 16 29 H 0.07 1.16 7.28 -51.93 -0.38 0.79 16 30 H 0.07 1.03 8.13 -51.93 -0.42 0.61 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.04 0.74 8.11 -51.93 -0.42 0.32 16 33 H 0.05 1.10 3.27 -51.93 -0.17 0.93 16 34 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.09 0.84 7.21 -51.93 -0.37 0.46 16 37 H 0.08 0.63 8.14 -51.92 -0.42 0.21 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 1.07 6.88 -51.93 -0.36 0.71 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 318.90 15.07 4.81 4.81 Total: -1.00 -32.51 318.90 -4.81 -37.32 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -6.16 Total: -0.19 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: 1.28 Total: -2.48 kcal Atomic # 7 Polarization: -27.00 SS G_CDS: 0.77 Total: -26.22 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: -1.36 Total: -29.93 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.14 Total: 16.70 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.51 -4.81 -37.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849850433.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.226 kcal (2) G-P(sol) polarization free energy of solvation -32.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds