Wall clock time and date at job start Mon Mar 30 2020 05:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42904 * 114.00212 * 2 1 4 4 H 1.09004 * 109.46505 * 30.00607 * 3 2 1 5 5 C 1.52997 * 109.47396 * 270.00543 * 3 2 1 6 6 O 1.45199 * 109.47075 * 64.99635 * 5 3 2 7 7 C 1.34230 * 116.99614 * 179.97438 * 6 5 3 8 8 O 1.20824 * 120.00179 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99717 * 179.97438 * 7 6 5 10 10 H 1.09003 * 109.46535 * 60.00663 * 9 7 6 11 11 C 1.52997 * 109.47421 * 300.00321 * 9 7 6 12 12 C 1.50699 * 109.46803 * 179.97438 * 9 7 6 13 13 H 1.07994 * 120.00588 * 0.02562 * 12 9 7 14 14 C 1.37877 * 119.99779 * 179.97438 * 12 9 7 15 15 N 1.31516 * 120.00274 * 0.02562 * 14 12 9 16 16 Si 1.86805 * 120.00271 * 180.02562 * 14 12 9 17 17 H 1.48508 * 109.46490 * 60.00291 * 16 14 12 18 18 H 1.48492 * 109.47236 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47080 * 300.00821 * 16 14 12 20 20 C 1.52997 * 109.47100 * 149.99921 * 3 2 1 21 21 H 1.08998 * 110.43687 * 58.91583 * 20 3 2 22 22 C 1.54814 * 110.49025 * 296.22773 * 20 3 2 23 23 C 1.55002 * 102.08858 * 220.44120 * 22 20 3 24 24 O 1.44377 * 103.49208 * 37.02421 * 23 22 20 25 25 C 1.43742 * 106.97564 * 319.93777 * 24 23 22 26 26 H 1.09005 * 109.47140 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47195 * 299.99725 * 1 2 3 28 28 H 1.09003 * 109.47276 * 59.99645 * 1 2 3 29 29 H 1.09002 * 109.47153 * 304.99576 * 5 3 2 30 30 H 1.09001 * 109.46832 * 184.99767 * 5 3 2 31 31 H 1.09005 * 109.46960 * 59.99818 * 11 9 7 32 32 H 1.09001 * 109.47231 * 179.97438 * 11 9 7 33 33 H 1.09003 * 109.47003 * 300.00262 * 11 9 7 34 34 H 0.96995 * 120.00517 * 179.97438 * 15 14 12 35 35 H 1.08999 * 110.90293 * 338.64082 * 22 20 3 36 36 H 1.09002 * 110.90626 * 102.24583 * 22 20 3 37 37 H 1.08996 * 110.61866 * 278.52090 * 23 22 20 38 38 H 1.09005 * 110.74573 * 155.58505 * 23 22 20 39 39 H 1.08999 * 109.88148 * 267.09078 * 25 24 23 40 40 H 1.08998 * 109.88443 * 145.93555 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9993 0.5140 5 6 2.2176 1.7715 -1.4424 6 8 0.9279 1.9252 -2.0915 7 6 0.9341 2.3319 -3.3707 8 8 1.9825 2.5516 -3.9297 9 6 -0.3665 2.5132 -4.1101 10 1 -0.9736 3.2606 -3.5992 11 6 -1.1210 1.1828 -4.1489 12 6 -0.0844 2.9726 -5.5174 13 1 0.9346 3.1182 -5.8439 14 6 -1.1274 3.2059 -6.3885 15 7 -2.3684 3.0282 -5.9911 16 14 -0.7779 3.7747 -8.1332 17 1 0.0498 2.7567 -8.8290 18 1 -2.0594 3.9535 -8.8616 19 1 -0.0459 5.0662 -8.0955 20 6 3.3588 1.2632 0.7213 21 1 4.0307 0.5587 0.2310 22 6 3.1655 0.8856 2.2101 23 6 4.1715 1.8291 2.9176 24 8 4.0867 3.0487 2.1496 25 6 3.9904 2.6681 0.7668 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 2.8098 1.0321 -1.9816 30 1 2.7412 2.7275 -1.4437 31 1 -1.3250 0.8510 -3.1308 32 1 -2.0619 1.3141 -4.6832 33 1 -0.5138 0.4355 -4.6597 34 1 -3.1022 3.1927 -6.6037 35 1 2.1454 1.0912 2.5342 36 1 3.4242 -0.1591 2.3832 37 1 5.1798 1.4173 2.8739 38 1 3.8743 2.0050 3.9515 39 1 4.9840 2.6425 0.3194 40 1 3.3584 3.3761 0.2306 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849850438.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:33 Heat of formation + Delta-G solvation = -189.250099 kcal Electronic energy + Delta-G solvation = -21772.242833 eV Core-core repulsion = 18359.157939 eV Total energy + Delta-G solvation = -3413.084893 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.17642 -39.39577 -37.75451 -35.58670 -33.91035 -33.27496 -30.84011 -30.32774 -27.88072 -26.50665 -25.22996 -23.88375 -23.03936 -21.95152 -20.60162 -19.75671 -17.48589 -16.90945 -16.36214 -16.14727 -16.03992 -15.73708 -15.30736 -15.14418 -14.90475 -14.50145 -14.00665 -13.33836 -13.22466 -12.84473 -12.78092 -12.26189 -11.94953 -11.78356 -11.67769 -11.43162 -11.39651 -11.12771 -11.03035 -10.84107 -10.83359 -10.71169 -10.36358 -10.09061 -10.06936 -9.90253 -9.60532 -9.08179 -9.06682 -8.46425 -6.12419 -4.17975 3.27624 3.31421 3.32152 3.34405 3.43565 3.55569 3.73952 4.31583 4.39960 4.56925 4.75262 4.88879 4.94045 4.99196 5.07934 5.20880 5.32480 5.40592 5.46564 5.48169 5.54278 5.54794 5.67789 5.72428 5.77566 5.87489 5.99165 6.16575 6.60942 6.63392 6.82751 6.85032 7.15233 7.19714 7.41044 7.71695 7.92189 8.11964 8.82056 8.91383 9.47709 10.94961 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.033581 B = 0.003947 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.605717 B = 7092.869117 C = 7656.275365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.380 6.380 3 C 0.104 3.896 4 H 0.074 0.926 5 C 0.036 3.964 6 O -0.364 6.364 7 C 0.464 3.536 8 O -0.517 6.517 9 C 0.058 3.942 10 H 0.063 0.937 11 C -0.132 4.132 12 C -0.514 4.514 13 H 0.075 0.925 14 C 0.062 3.938 15 N -0.893 5.893 16 Si 0.905 3.095 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.275 1.275 20 C -0.118 4.118 21 H 0.095 0.905 22 C -0.140 4.140 23 C 0.043 3.957 24 O -0.377 6.377 25 C 0.048 3.952 26 H 0.082 0.918 27 H 0.037 0.963 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.022 0.978 32 H 0.096 0.904 33 H 0.031 0.969 34 H 0.264 0.736 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.093 0.907 39 H 0.067 0.933 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.588 -5.040 16.412 18.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.298 6.298 3 C 0.045 3.955 4 H 0.092 0.908 5 C -0.038 4.038 6 O -0.283 6.283 7 C 0.309 3.691 8 O -0.403 6.403 9 C 0.039 3.961 10 H 0.081 0.919 11 C -0.190 4.190 12 C -0.552 4.552 13 H 0.093 0.907 14 C -0.139 4.139 15 N -0.531 5.531 16 Si 0.733 3.267 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.201 1.201 20 C -0.137 4.137 21 H 0.114 0.886 22 C -0.178 4.178 23 C -0.033 4.033 24 O -0.296 6.296 25 C -0.029 4.029 26 H 0.100 0.900 27 H 0.056 0.944 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.041 0.959 32 H 0.115 0.885 33 H 0.050 0.950 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.079 0.921 38 H 0.111 0.889 39 H 0.085 0.915 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.850 -4.916 16.266 18.719 hybrid contribution 0.118 0.251 -1.116 1.150 sum 7.968 -4.665 15.151 17.743 Atomic orbital electron populations 1.22930 0.80116 1.02587 1.01251 1.87833 1.20631 1.26433 1.94949 1.22118 0.94302 0.85886 0.93150 0.90784 1.23564 0.85684 1.01524 0.93074 1.86601 1.33140 1.79601 1.28937 1.25382 0.94449 0.70994 0.78295 1.90495 1.34826 1.47333 1.67688 1.18755 0.85684 0.97090 0.94565 0.91890 1.21730 1.03172 0.95571 0.98522 1.21093 0.94316 1.45382 0.94390 0.90709 1.24931 0.94812 0.95106 0.99075 1.69862 0.98350 1.48789 1.36103 0.86430 0.77380 0.79426 0.83488 1.20070 1.21192 1.20067 1.22566 0.96211 0.98192 0.96743 0.88616 1.23091 1.00774 1.00652 0.93248 1.23608 0.98509 0.84804 0.96385 1.88895 1.94988 1.28682 1.17035 1.23324 1.00635 0.94938 0.83992 0.89961 0.94449 0.91617 0.90984 0.90986 0.95934 0.88550 0.94976 0.92619 0.90246 0.89682 0.92110 0.88892 0.91462 0.89136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.71 101.05 1.08 1.43 16 2 O -0.38 -5.27 10.12 -38.80 -0.39 -5.66 16 3 C 0.10 1.34 1.81 -26.73 -0.05 1.29 16 4 H 0.07 0.94 7.78 -51.93 -0.40 0.54 16 5 C 0.04 0.58 4.96 37.16 0.18 0.76 16 6 O -0.36 -7.12 8.23 -42.02 -0.35 -7.46 16 7 C 0.46 10.88 7.25 36.01 0.26 11.14 16 8 O -0.52 -13.20 15.21 -18.75 -0.29 -13.49 16 9 C 0.06 1.47 2.74 -92.92 -0.25 1.21 16 10 H 0.06 1.64 8.14 -51.93 -0.42 1.22 16 11 C -0.13 -3.10 8.90 37.16 0.33 -2.77 16 12 C -0.51 -14.43 8.38 -34.44 -0.29 -14.71 16 13 H 0.07 2.19 6.76 -52.49 -0.35 1.83 16 14 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 15 N -0.89 -24.71 11.32 55.43 0.63 -24.08 16 16 Si 0.91 21.46 29.54 -169.99 -5.02 16.44 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 C -0.12 -1.24 2.85 -89.09 -0.25 -1.49 16 21 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 22 C -0.14 -1.24 6.50 -24.72 -0.16 -1.40 16 23 C 0.04 0.37 7.72 38.22 0.29 0.66 16 24 O -0.38 -4.39 11.52 -35.23 -0.41 -4.80 16 25 C 0.05 0.51 6.84 37.73 0.26 0.77 16 26 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.04 0.41 8.09 -51.93 -0.42 -0.01 16 28 H 0.07 0.97 6.37 -51.93 -0.33 0.64 16 29 H 0.07 1.19 8.13 -51.93 -0.42 0.77 16 30 H 0.07 1.09 6.40 -51.93 -0.33 0.76 16 31 H 0.02 0.45 8.11 -51.93 -0.42 0.03 16 32 H 0.10 2.43 6.07 -51.93 -0.32 2.12 16 33 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 35 H 0.08 0.73 7.86 -51.93 -0.41 0.32 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.09 1.01 6.37 -51.93 -0.33 0.68 16 LS Contribution 326.61 15.07 4.92 4.92 Total: -1.00 -30.66 326.61 -5.85 -36.50 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -6.26 Total: -0.89 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: 1.31 Total: -1.48 kcal Atomic # 7 Polarization: -24.71 SS G_CDS: 0.63 Total: -24.08 kcal Atomic # 8 Polarization: -29.98 SS G_CDS: -1.43 Total: -31.41 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.66 -5.85 -36.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849850438.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.748 kcal (2) G-P(sol) polarization free energy of solvation -30.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds