Wall clock time and date at job start Mon Mar 30 2020 05:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42904 * 114.00212 * 2 1 4 4 H 1.09004 * 109.46505 * 30.00607 * 3 2 1 5 5 C 1.52997 * 109.47396 * 270.00543 * 3 2 1 6 6 O 1.45199 * 109.47075 * 64.99635 * 5 3 2 7 7 C 1.34230 * 116.99614 * 179.97438 * 6 5 3 8 8 O 1.20824 * 120.00179 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99717 * 179.97438 * 7 6 5 10 10 H 1.09003 * 109.46535 * 60.00663 * 9 7 6 11 11 C 1.52997 * 109.47421 * 300.00321 * 9 7 6 12 12 C 1.50699 * 109.46803 * 179.97438 * 9 7 6 13 13 H 1.07994 * 120.00588 * 0.02562 * 12 9 7 14 14 C 1.37877 * 119.99779 * 179.97438 * 12 9 7 15 15 N 1.31516 * 120.00274 * 0.02562 * 14 12 9 16 16 Si 1.86805 * 120.00271 * 180.02562 * 14 12 9 17 17 H 1.48508 * 109.46490 * 60.00291 * 16 14 12 18 18 H 1.48492 * 109.47236 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47080 * 300.00821 * 16 14 12 20 20 C 1.52997 * 109.47100 * 149.99921 * 3 2 1 21 21 H 1.08998 * 110.43687 * 58.91583 * 20 3 2 22 22 C 1.54814 * 110.49025 * 296.22773 * 20 3 2 23 23 C 1.55002 * 102.08858 * 220.44120 * 22 20 3 24 24 O 1.44377 * 103.49208 * 37.02421 * 23 22 20 25 25 C 1.43742 * 106.97564 * 319.93777 * 24 23 22 26 26 H 1.09005 * 109.47140 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47195 * 299.99725 * 1 2 3 28 28 H 1.09003 * 109.47276 * 59.99645 * 1 2 3 29 29 H 1.09002 * 109.47153 * 304.99576 * 5 3 2 30 30 H 1.09001 * 109.46832 * 184.99767 * 5 3 2 31 31 H 1.09005 * 109.46960 * 59.99818 * 11 9 7 32 32 H 1.09001 * 109.47231 * 179.97438 * 11 9 7 33 33 H 1.09003 * 109.47003 * 300.00262 * 11 9 7 34 34 H 0.96995 * 120.00517 * 179.97438 * 15 14 12 35 35 H 1.08999 * 110.90293 * 338.64082 * 22 20 3 36 36 H 1.09002 * 110.90626 * 102.24583 * 22 20 3 37 37 H 1.08996 * 110.61866 * 278.52090 * 23 22 20 38 38 H 1.09005 * 110.74573 * 155.58505 * 23 22 20 39 39 H 1.08999 * 109.88148 * 267.09078 * 25 24 23 40 40 H 1.08998 * 109.88443 * 145.93555 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9993 0.5140 5 6 2.2176 1.7715 -1.4424 6 8 0.9279 1.9252 -2.0915 7 6 0.9341 2.3319 -3.3707 8 8 1.9825 2.5516 -3.9297 9 6 -0.3665 2.5132 -4.1101 10 1 -0.9736 3.2606 -3.5992 11 6 -1.1210 1.1828 -4.1489 12 6 -0.0844 2.9726 -5.5174 13 1 0.9346 3.1182 -5.8439 14 6 -1.1274 3.2059 -6.3885 15 7 -2.3684 3.0282 -5.9911 16 14 -0.7779 3.7747 -8.1332 17 1 0.0498 2.7567 -8.8290 18 1 -2.0594 3.9535 -8.8616 19 1 -0.0459 5.0662 -8.0955 20 6 3.3588 1.2632 0.7213 21 1 4.0307 0.5587 0.2310 22 6 3.1655 0.8856 2.2101 23 6 4.1715 1.8291 2.9176 24 8 4.0867 3.0487 2.1496 25 6 3.9904 2.6681 0.7668 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 2.8098 1.0321 -1.9816 30 1 2.7412 2.7275 -1.4437 31 1 -1.3250 0.8510 -3.1308 32 1 -2.0619 1.3141 -4.6832 33 1 -0.5138 0.4355 -4.6597 34 1 -3.1022 3.1927 -6.6037 35 1 2.1454 1.0912 2.5342 36 1 3.4242 -0.1591 2.3832 37 1 5.1798 1.4173 2.8739 38 1 3.8743 2.0050 3.9515 39 1 4.9840 2.6425 0.3194 40 1 3.3584 3.3761 0.2306 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849850438.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:33 Heat of formation + Delta-G solvation = -208.236957 kcal Electronic energy + Delta-G solvation = -21773.066165 eV Core-core repulsion = 18359.157939 eV Total energy + Delta-G solvation = -3413.908225 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.53652 -40.64829 -38.85140 -37.25706 -35.94347 -34.23225 -32.71029 -31.33700 -28.90367 -27.59588 -27.29781 -25.22575 -24.37786 -22.93636 -21.77547 -21.30840 -18.71417 -18.47724 -18.08469 -17.69661 -17.19593 -16.98611 -16.55338 -16.43993 -16.15447 -15.77505 -15.33242 -14.77438 -14.55472 -14.22638 -14.03058 -13.68496 -13.50466 -13.01974 -12.83525 -12.80187 -12.66661 -12.64365 -12.46887 -12.32209 -12.20085 -12.07131 -12.04169 -11.74550 -11.49884 -11.16383 -11.12602 -10.70462 -10.57506 -10.51123 -8.21529 -6.34950 1.40439 1.41992 1.44156 1.51222 1.80655 2.42450 2.58365 2.97942 3.08588 3.41458 3.65240 3.85672 3.91899 3.95637 4.14270 4.21511 4.28140 4.35928 4.39739 4.50573 4.62029 4.67390 4.72322 4.74879 4.84588 4.86510 4.88067 4.90207 5.02059 5.05071 5.13020 5.36037 5.46246 5.67225 5.86469 5.86874 6.08786 6.11872 6.70987 7.01206 7.33963 8.84678 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.033581 B = 0.003947 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.605717 B = 7092.869117 C = 7656.275365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.388 6.388 3 C 0.111 3.889 4 H 0.077 0.923 5 C 0.030 3.970 6 O -0.357 6.357 7 C 0.471 3.529 8 O -0.543 6.543 9 C 0.050 3.950 10 H 0.052 0.948 11 C -0.118 4.118 12 C -0.542 4.542 13 H 0.055 0.945 14 C 0.024 3.976 15 N -0.908 5.908 16 Si 0.963 3.037 17 H -0.274 1.274 18 H -0.273 1.273 19 H -0.274 1.274 20 C -0.114 4.114 21 H 0.102 0.898 22 C -0.135 4.135 23 C 0.041 3.959 24 O -0.400 6.400 25 C 0.047 3.953 26 H 0.099 0.901 27 H 0.056 0.944 28 H 0.040 0.960 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.049 0.951 32 H 0.078 0.922 33 H 0.026 0.974 34 H 0.269 0.731 35 H 0.076 0.924 36 H 0.099 0.901 37 H 0.075 0.925 38 H 0.109 0.891 39 H 0.078 0.922 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.954 -5.664 17.454 20.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.307 6.307 3 C 0.053 3.947 4 H 0.095 0.905 5 C -0.044 4.044 6 O -0.274 6.274 7 C 0.317 3.683 8 O -0.433 6.433 9 C 0.032 3.968 10 H 0.069 0.931 11 C -0.176 4.176 12 C -0.580 4.580 13 H 0.073 0.927 14 C -0.176 4.176 15 N -0.546 5.546 16 Si 0.787 3.213 17 H -0.199 1.199 18 H -0.198 1.198 19 H -0.199 1.199 20 C -0.133 4.133 21 H 0.121 0.879 22 C -0.172 4.172 23 C -0.035 4.035 24 O -0.319 6.319 25 C -0.030 4.030 26 H 0.118 0.882 27 H 0.074 0.926 28 H 0.059 0.941 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.068 0.932 32 H 0.097 0.903 33 H 0.045 0.955 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.118 0.882 37 H 0.093 0.907 38 H 0.127 0.873 39 H 0.096 0.904 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.203 -5.554 17.340 19.970 hybrid contribution 0.011 0.426 -1.340 1.406 sum 8.214 -5.128 16.000 18.702 Atomic orbital electron populations 1.23024 0.79546 1.03719 1.00910 1.87830 1.21326 1.26747 1.94797 1.22160 0.95867 0.85664 0.91026 0.90456 1.23968 0.83966 1.02001 0.94496 1.86566 1.35280 1.78590 1.26944 1.24909 0.93334 0.70709 0.79379 1.90474 1.35444 1.48675 1.68686 1.18679 0.86821 0.97579 0.93770 0.93066 1.21549 1.01716 0.94486 0.99871 1.21228 0.93687 1.46869 0.96197 0.92661 1.25621 0.94608 0.94870 1.02499 1.69940 0.98832 1.48567 1.37284 0.85541 0.77683 0.78838 0.79193 1.19931 1.19784 1.19934 1.22562 0.94665 0.98365 0.97728 0.87949 1.23084 1.00845 1.01601 0.91686 1.23810 0.99285 0.83662 0.96747 1.88872 1.95136 1.30456 1.17475 1.23331 1.01047 0.94698 0.83936 0.88223 0.92582 0.94086 0.91579 0.90296 0.93170 0.90331 0.95485 0.92195 0.90504 0.88201 0.90669 0.87327 0.90422 0.90194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 10.71 113.37 1.21 1.78 16 2 O -0.39 -10.09 10.12 -145.57 -1.47 -11.56 16 3 C 0.11 2.72 1.81 30.59 0.06 2.78 16 4 H 0.08 1.86 7.78 -2.39 -0.02 1.84 16 5 C 0.03 0.94 4.96 71.98 0.36 1.29 16 6 O -0.36 -13.88 8.23 -48.77 -0.40 -14.28 16 7 C 0.47 22.36 7.25 71.24 0.52 22.88 16 8 O -0.54 -28.26 15.21 21.97 0.33 -27.92 16 9 C 0.05 2.60 2.74 -12.29 -0.03 2.56 16 10 H 0.05 2.73 8.14 -2.39 -0.02 2.71 16 11 C -0.12 -5.56 8.90 71.98 0.64 -4.92 16 12 C -0.54 -30.97 8.38 25.60 0.21 -30.75 16 13 H 0.06 3.32 6.76 -2.91 -0.02 3.30 16 14 C 0.02 1.33 5.30 84.65 0.45 1.78 16 15 N -0.91 -50.24 11.32 21.45 0.24 -50.00 16 16 Si 0.96 43.88 29.54 68.60 2.03 45.90 16 17 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 18 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 19 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 20 C -0.11 -2.18 2.85 -9.80 -0.03 -2.21 16 21 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 22 C -0.13 -2.03 6.50 31.90 0.21 -1.83 16 23 C 0.04 0.59 7.72 72.67 0.56 1.15 16 24 O -0.40 -8.67 11.52 -148.98 -1.72 -10.39 16 25 C 0.05 0.94 6.84 72.36 0.50 1.43 16 26 H 0.10 1.97 8.14 -2.38 -0.02 1.95 16 27 H 0.06 1.10 8.09 -2.39 -0.02 1.08 16 28 H 0.04 1.17 6.37 -2.39 -0.02 1.15 16 29 H 0.07 2.16 8.13 -2.39 -0.02 2.15 16 30 H 0.08 2.38 6.40 -2.39 -0.02 2.36 16 31 H 0.05 2.02 8.11 -2.38 -0.02 2.00 16 32 H 0.08 3.98 6.07 -2.39 -0.01 3.97 16 33 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 35 H 0.08 1.22 7.86 -2.39 -0.02 1.20 16 36 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 39 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.08 1.74 6.37 -2.39 -0.02 1.73 16 Total: -1.00 -65.05 326.61 4.68 -60.37 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 1.02 Total: 11.94 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: 4.65 Total: -4.06 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: 0.24 Total: -50.00 kcal Atomic # 8 Polarization: -60.89 SS G_CDS: -3.26 Total: -64.15 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -65.05 4.68 -60.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849850438.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.871 kcal (2) G-P(sol) polarization free energy of solvation -65.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds