Wall clock time and date at job start Mon Mar 30 2020 05:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 113.99984 * 2 1 4 4 H 1.08999 * 109.47016 * 30.00039 * 3 2 1 5 5 C 1.53001 * 109.46840 * 270.00238 * 3 2 1 6 6 O 1.45199 * 109.47391 * 64.99863 * 5 3 2 7 7 C 1.34224 * 116.99902 * 180.02562 * 6 5 3 8 8 O 1.20824 * 120.00313 * 359.97438 * 7 6 5 9 9 C 1.50694 * 120.00204 * 180.02562 * 7 6 5 10 10 H 1.09004 * 109.47302 * 59.99464 * 9 7 6 11 11 C 1.53001 * 109.46853 * 299.99840 * 9 7 6 12 12 C 1.50700 * 109.47519 * 179.97438 * 9 7 6 13 13 H 1.07998 * 119.99896 * 35.21125 * 12 9 7 14 14 C 1.37877 * 119.99987 * 215.21324 * 12 9 7 15 15 N 1.31511 * 119.99997 * 174.68530 * 14 12 9 16 16 Si 1.86804 * 119.99932 * 354.96234 * 14 12 9 17 17 H 1.48495 * 109.47321 * 94.89217 * 16 14 12 18 18 H 1.48505 * 109.46885 * 214.89023 * 16 14 12 19 19 H 1.48501 * 109.47348 * 334.88901 * 16 14 12 20 20 C 1.52997 * 109.46954 * 150.00106 * 3 2 1 21 21 H 1.09000 * 110.74963 * 182.02043 * 20 3 2 22 22 C 1.55301 * 110.84856 * 305.71059 * 20 3 2 23 23 C 1.54952 * 100.94328 * 152.32550 * 22 20 3 24 24 O 1.43648 * 105.13396 * 323.55769 * 23 22 20 25 25 C 1.43233 * 109.97061 * 24.42640 * 24 23 22 26 26 H 1.08995 * 109.46971 * 60.00252 * 1 2 3 27 27 H 1.09003 * 109.46729 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47308 * 300.00051 * 1 2 3 29 29 H 1.09007 * 109.46970 * 304.99831 * 5 3 2 30 30 H 1.09001 * 109.46932 * 185.00304 * 5 3 2 31 31 H 1.09000 * 109.47348 * 55.07020 * 11 9 7 32 32 H 1.09009 * 109.46985 * 175.06468 * 11 9 7 33 33 H 1.08999 * 109.46931 * 295.06471 * 11 9 7 34 34 H 0.97005 * 120.00279 * 180.02562 * 15 14 12 35 35 H 1.09004 * 111.12912 * 270.24919 * 22 20 3 36 36 H 1.09000 * 111.12510 * 34.41045 * 22 20 3 37 37 H 1.09000 * 110.30897 * 204.64137 * 23 22 20 38 38 H 1.08998 * 110.30859 * 82.46914 * 23 22 20 39 39 H 1.09000 * 109.82908 * 238.77412 * 25 24 23 40 40 H 1.09004 * 109.83268 * 117.80159 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2176 1.7714 -1.4425 6 8 0.9279 1.9250 -2.0917 7 6 0.9343 2.3305 -3.3712 8 8 1.9826 2.5502 -3.9302 9 6 -0.3663 2.5129 -4.1103 10 1 -0.9725 3.2613 -3.5999 11 6 -1.1223 1.1832 -4.1477 12 6 -0.0842 2.9706 -5.5181 13 1 0.7876 2.6049 -6.0404 14 6 -0.9390 3.8563 -6.1394 15 7 -0.6392 4.3366 -7.3264 16 14 -2.5191 4.3798 -5.2917 17 1 -2.2922 5.6548 -4.5652 18 1 -3.5854 4.5719 -6.3074 19 1 -2.9361 3.3289 -4.3290 20 6 3.3589 1.2632 0.7212 21 1 3.8049 2.2569 0.7646 22 6 3.2064 0.6585 2.1435 23 6 4.6184 0.0586 2.3610 24 8 5.0166 -0.4394 1.0739 25 6 4.3152 0.2610 0.0399 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 2.8099 1.0319 -1.9816 30 1 2.7413 2.7273 -1.4439 31 1 -1.2496 0.8089 -3.1319 32 1 -2.1005 1.3342 -4.6044 33 1 -0.5556 0.4594 -4.7334 34 1 -1.2404 4.9600 -7.7633 35 1 2.9913 1.4337 2.8791 36 1 2.4425 -0.1189 2.1600 37 1 4.5763 -0.7551 3.0851 38 1 5.3097 0.8308 2.6983 39 1 3.7433 -0.4448 -0.5624 40 1 5.0247 0.7970 -0.5906 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849850440.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:37 Heat of formation + Delta-G solvation = -209.583399 kcal Electronic energy + Delta-G solvation = -21874.340403 eV Core-core repulsion = 18460.373791 eV Total energy + Delta-G solvation = -3413.966611 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.53679 -40.65378 -38.77644 -37.23422 -35.82088 -34.19722 -33.43918 -31.32606 -29.01438 -27.46896 -27.29173 -25.41999 -24.33419 -22.88527 -21.60140 -21.17127 -19.28943 -18.39049 -18.16977 -17.76807 -17.33650 -17.00058 -16.54491 -16.32843 -15.88945 -15.78784 -15.16846 -14.67300 -14.60472 -14.34030 -14.04911 -13.96113 -13.78774 -13.33275 -13.10035 -13.05346 -12.65297 -12.56635 -12.32046 -12.22893 -12.15501 -11.93795 -11.72790 -11.71484 -11.47719 -11.32514 -11.12953 -10.79355 -10.57647 -10.44885 -8.33692 -6.43469 1.34312 1.37430 1.43948 1.51929 1.76160 2.32765 2.68210 2.97429 3.03936 3.31177 3.64588 3.85360 3.92633 4.05073 4.13452 4.23398 4.29110 4.33421 4.36995 4.49985 4.53576 4.65807 4.66695 4.72917 4.78382 4.82705 4.85426 4.93552 4.97981 5.03435 5.07406 5.27526 5.39137 5.47049 5.53354 6.03805 6.17471 6.19089 6.65619 7.00830 7.21076 8.83469 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.035345 B = 0.004118 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.990627 B = 6797.057773 C = 7161.988382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.391 6.391 3 C 0.112 3.888 4 H 0.096 0.904 5 C 0.031 3.969 6 O -0.352 6.352 7 C 0.467 3.533 8 O -0.543 6.543 9 C 0.021 3.979 10 H 0.083 0.917 11 C -0.129 4.129 12 C -0.521 4.521 13 H 0.026 0.974 14 C 0.013 3.987 15 N -0.944 5.944 16 Si 0.943 3.057 17 H -0.268 1.268 18 H -0.280 1.280 19 H -0.218 1.218 20 C -0.116 4.116 21 H 0.119 0.881 22 C -0.137 4.137 23 C 0.044 3.956 24 O -0.410 6.410 25 C 0.053 3.947 26 H 0.046 0.954 27 H 0.094 0.906 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.040 0.960 34 H 0.271 0.729 35 H 0.109 0.891 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.272 -6.445 23.925 24.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.310 6.310 3 C 0.054 3.946 4 H 0.114 0.886 5 C -0.043 4.043 6 O -0.270 6.270 7 C 0.312 3.688 8 O -0.431 6.431 9 C 0.001 3.999 10 H 0.101 0.899 11 C -0.186 4.186 12 C -0.559 4.559 13 H 0.044 0.956 14 C -0.185 4.185 15 N -0.582 5.582 16 Si 0.764 3.236 17 H -0.193 1.193 18 H -0.206 1.206 19 H -0.141 1.141 20 C -0.134 4.134 21 H 0.137 0.863 22 C -0.175 4.175 23 C -0.032 4.032 24 O -0.330 6.330 25 C -0.023 4.023 26 H 0.065 0.935 27 H 0.113 0.887 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.128 0.872 36 H 0.101 0.899 37 H 0.113 0.887 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.821 -6.619 23.602 24.580 hybrid contribution -0.259 0.840 -0.864 1.232 sum 1.562 -5.779 22.738 23.513 Atomic orbital electron populations 1.23046 0.79414 1.03604 1.01258 1.87871 1.21500 1.26868 1.94720 1.21980 0.95822 0.85945 0.90856 0.88603 1.23915 0.83941 1.01894 0.94588 1.86532 1.35176 1.78646 1.26597 1.24904 0.93296 0.71098 0.79527 1.90543 1.35687 1.48029 1.68873 1.19111 0.88619 0.98835 0.93324 0.89902 1.21866 1.00020 0.95182 1.01580 1.20833 1.10326 1.27418 0.97313 0.95557 1.26062 1.02265 0.94483 0.95682 1.70068 1.38942 1.31835 1.17376 0.85813 0.77958 0.80301 0.79511 1.19273 1.20551 1.14055 1.22879 0.93053 1.01381 0.96087 0.86327 1.23240 0.97867 1.01682 0.94675 1.23592 0.94843 0.99520 0.85208 1.88370 1.66367 1.62228 1.16052 1.23171 0.94011 0.94387 0.90765 0.93548 0.88717 0.92206 0.92213 0.90362 0.90800 0.91442 0.94115 0.92035 0.87239 0.89877 0.88651 0.90823 0.91975 0.91499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 10.71 113.37 1.21 1.65 16 2 O -0.39 -9.11 8.48 -145.57 -1.23 -10.34 16 3 C 0.11 2.37 2.31 30.59 0.07 2.44 16 4 H 0.10 1.68 7.79 -2.39 -0.02 1.66 16 5 C 0.03 0.90 4.82 71.98 0.35 1.25 16 6 O -0.35 -12.29 8.14 -48.71 -0.40 -12.69 16 7 C 0.47 20.96 7.25 71.23 0.52 21.48 16 8 O -0.54 -28.73 15.52 21.97 0.34 -28.39 16 9 C 0.02 0.94 2.28 -12.29 -0.03 0.92 16 10 H 0.08 3.48 5.58 -2.38 -0.01 3.47 16 11 C -0.13 -4.89 8.96 71.98 0.64 -4.24 16 12 C -0.52 -30.35 8.36 25.60 0.21 -30.14 16 13 H 0.03 1.79 7.62 -2.91 -0.02 1.77 16 14 C 0.01 0.75 5.47 84.66 0.46 1.21 16 15 N -0.94 -59.00 13.96 21.45 0.30 -58.70 16 16 Si 0.94 40.64 26.61 68.60 1.83 42.47 16 17 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 18 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 19 H -0.22 -7.98 5.99 99.48 0.60 -7.38 16 20 C -0.12 -2.02 2.95 -9.54 -0.03 -2.04 16 21 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 22 C -0.14 -1.87 6.55 32.05 0.21 -1.66 16 23 C 0.04 0.68 7.78 72.65 0.57 1.25 16 24 O -0.41 -9.83 11.36 -148.98 -1.69 -11.52 16 25 C 0.05 1.21 6.43 72.45 0.47 1.68 16 26 H 0.05 1.06 6.37 -2.39 -0.02 1.05 16 27 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.06 0.89 8.08 -2.39 -0.02 0.87 16 29 H 0.06 1.92 7.28 -2.38 -0.02 1.90 16 30 H 0.08 2.20 8.13 -2.39 -0.02 2.18 16 31 H 0.07 2.25 8.00 -2.39 -0.02 2.23 16 32 H 0.07 2.43 7.03 -2.38 -0.02 2.42 16 33 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.27 15.58 8.31 -92.70 -0.77 14.81 16 35 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.08 1.30 7.21 -2.39 -0.02 1.28 16 37 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.06 1.65 6.88 -2.39 -0.02 1.63 16 40 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -74.65 323.43 4.71 -69.95 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: 0.91 Total: 15.44 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: 4.66 Total: -6.22 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: 0.30 Total: -58.70 kcal Atomic # 8 Polarization: -59.96 SS G_CDS: -2.98 Total: -62.94 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 1.83 Total: 42.47 kcal Total: -74.65 4.71 -69.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849850440.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.635 kcal (2) G-P(sol) polarization free energy of solvation -74.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds