Wall clock time and date at job start Mon Mar 30 2020 05:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47000 * 2 1 4 4 C 1.50706 * 109.46859 * 240.00919 * 2 1 3 5 5 H 1.08000 * 119.99302 * 239.99789 * 4 2 1 6 6 C 1.37871 * 120.00436 * 59.72322 * 4 2 1 7 7 N 1.31515 * 119.99684 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47050 * 59.99579 * 8 6 4 10 10 H 1.48496 * 109.47289 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46492 * 299.99554 * 8 6 4 12 12 C 1.50696 * 109.47505 * 120.00678 * 2 1 3 13 13 O 1.20827 * 120.00035 * 119.99773 * 12 2 1 14 14 O 1.34227 * 119.99746 * 300.00063 * 12 2 1 15 15 C 1.45200 * 116.99882 * 180.02562 * 14 12 2 16 16 C 1.53005 * 109.47208 * 180.02562 * 15 14 12 17 17 O 1.42897 * 109.46973 * 64.99701 * 16 15 14 18 18 C 1.42899 * 113.99898 * 179.97438 * 17 16 15 19 19 H 1.09004 * 109.48500 * 310.00164 * 18 17 16 20 20 C 1.53086 * 109.48518 * 189.97577 * 18 17 16 21 21 C 1.53181 * 109.16817 * 182.42171 * 20 18 17 22 22 C 1.53176 * 109.04237 * 56.95952 * 21 20 18 23 23 C 1.53088 * 109.16744 * 303.02873 * 22 21 20 24 24 O 1.42903 * 109.41528 * 57.60945 * 23 22 21 25 25 H 1.09002 * 109.46917 * 299.99220 * 1 2 3 26 26 H 1.08995 * 109.47505 * 59.99513 * 1 2 3 27 27 H 1.09001 * 109.47000 * 179.97438 * 1 2 3 28 28 H 0.97004 * 120.00247 * 180.02562 * 7 6 4 29 29 H 1.09005 * 109.47023 * 299.99765 * 15 14 12 30 30 H 1.08994 * 109.47708 * 59.99591 * 15 14 12 31 31 H 1.09002 * 109.46974 * 184.99783 * 16 15 14 32 32 H 1.08997 * 109.46965 * 304.99375 * 16 15 14 33 33 H 1.09000 * 109.52481 * 302.31984 * 20 18 17 34 34 H 1.09007 * 109.52168 * 62.50436 * 20 18 17 35 35 H 1.09003 * 109.53134 * 297.09759 * 21 20 18 36 36 H 1.08991 * 109.61787 * 176.88153 * 21 20 18 37 37 H 1.09003 * 109.52052 * 183.12164 * 22 21 20 38 38 H 1.09001 * 109.57258 * 62.96919 * 22 21 20 39 39 H 1.08994 * 109.48192 * 297.62708 * 23 22 21 40 40 H 1.09000 * 109.48659 * 177.59650 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 1 2.6532 -1.5883 -1.1316 6 6 1.6945 -0.2424 -2.4828 7 7 0.9335 0.8234 -2.6033 8 14 2.3165 -1.1232 -4.0082 9 1 1.8265 -2.5250 -4.0047 10 1 1.8156 -0.4272 -5.2205 11 1 3.8015 -1.1178 -4.0118 12 6 2.0324 -0.7105 1.2303 13 8 2.7270 -1.6929 1.1193 14 8 1.7081 -0.2520 2.4495 15 6 2.2278 -0.9860 3.5894 16 6 1.7557 -0.3197 4.8833 17 8 0.3340 -0.4250 4.9820 18 6 -0.2122 0.1686 6.1615 19 1 0.3329 -0.1897 7.0348 20 6 -1.6889 -0.2143 6.2890 21 6 -2.2825 0.4744 7.5218 22 6 -2.0831 1.9877 7.3933 23 6 -0.5911 2.2854 7.2234 24 8 -0.0955 1.5904 6.0773 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 0.6955 1.1524 -3.4842 29 1 1.8644 -2.0132 3.5566 30 1 3.3173 -0.9849 3.5563 31 1 2.2170 -0.8163 5.7370 32 1 2.0425 0.7318 4.8761 33 1 -2.2271 0.1078 5.3975 34 1 -1.7768 -1.2954 6.3978 35 1 -1.7778 0.1149 8.4185 36 1 -3.3473 0.2512 7.5885 37 1 -2.4531 2.4814 8.2920 38 1 -2.6292 2.3555 6.5247 39 1 -0.0512 1.9548 8.1106 40 1 -0.4473 3.3575 7.0888 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849853459.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:45 Heat of formation + Delta-G solvation = -197.663040 kcal Electronic energy + Delta-G solvation = -21296.937615 eV Core-core repulsion = 17883.487909 eV Total energy + Delta-G solvation = -3413.449706 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.84931 -39.40167 -37.18696 -35.50043 -33.92702 -33.79820 -31.27488 -30.48907 -29.27583 -25.12415 -25.00841 -23.59338 -23.38890 -21.99283 -20.53080 -19.71759 -17.62625 -16.95417 -16.60682 -16.14798 -15.95107 -15.72291 -15.17308 -14.94396 -14.52340 -14.21914 -14.09267 -13.61702 -13.09867 -12.98124 -12.75654 -12.53574 -12.06650 -11.80571 -11.51690 -11.43056 -11.30957 -11.04212 -10.97356 -10.77746 -10.71590 -10.59555 -10.26075 -10.03317 -9.98196 -9.86119 -9.67613 -9.01492 -8.96738 -8.37793 -6.03582 -4.09086 3.16033 3.36481 3.39057 3.41144 3.43051 3.61901 3.81748 4.46681 4.48995 4.52417 4.63553 4.72315 4.77083 5.06011 5.09339 5.26769 5.28916 5.32244 5.35318 5.40600 5.47601 5.58348 5.64033 5.72104 5.78307 5.88418 6.01751 6.28608 6.77896 6.89396 6.99177 7.01457 7.17240 7.33255 7.53922 7.82720 8.02643 8.22625 8.93680 9.01584 9.55873 11.03631 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.032519 B = 0.003485 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.820235 B = 8031.974568 C = 8462.183696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.057 3.943 3 H 0.064 0.936 4 C -0.512 4.512 5 H 0.074 0.926 6 C 0.061 3.939 7 N -0.892 5.892 8 Si 0.905 3.095 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.465 3.535 13 O -0.522 6.522 14 O -0.356 6.356 15 C 0.064 3.936 16 C 0.065 3.935 17 O -0.354 6.354 18 C 0.255 3.745 19 H 0.050 0.950 20 C -0.143 4.143 21 C -0.119 4.119 22 C -0.161 4.161 23 C 0.071 3.929 24 O -0.401 6.401 25 H 0.025 0.975 26 H 0.095 0.905 27 H 0.030 0.970 28 H 0.263 0.737 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.048 0.952 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.858 1.869 22.096 22.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.039 3.961 3 H 0.081 0.919 4 C -0.550 4.550 5 H 0.093 0.907 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.733 3.267 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.201 1.201 12 C 0.310 3.690 13 O -0.410 6.410 14 O -0.274 6.274 15 C -0.010 4.010 16 C -0.011 4.011 17 O -0.273 6.273 18 C 0.160 3.840 19 H 0.067 0.933 20 C -0.180 4.180 21 C -0.157 4.157 22 C -0.199 4.199 23 C -0.005 4.005 24 O -0.322 6.322 25 H 0.044 0.956 26 H 0.114 0.886 27 H 0.049 0.951 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.067 0.933 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.756 1.666 21.643 22.222 hybrid contribution 0.454 -0.579 -0.311 0.798 sum -4.302 1.087 21.332 21.789 Atomic orbital electron populations 1.21714 0.95535 1.00008 1.01771 1.18741 0.94943 0.96912 0.85551 0.91884 1.21112 1.31785 1.13276 0.88869 0.90738 1.24935 0.94934 0.95058 0.99078 1.69880 1.36278 1.23071 1.23856 0.86437 0.79238 0.79674 0.81381 1.20122 1.21246 1.20121 1.25344 0.76385 0.83167 0.84106 1.90483 1.36676 1.26890 1.86912 1.86698 1.70219 1.55321 1.15143 1.22832 0.98393 0.96145 0.83662 1.22608 0.81157 1.01529 0.95796 1.88139 1.21351 1.74668 1.43121 1.22899 0.93761 0.79815 0.87573 0.93280 1.22027 0.94537 1.01669 0.99806 1.21580 1.01661 0.95010 0.97402 1.22255 0.97759 0.96733 1.03128 1.22492 0.92957 0.97294 0.87774 1.87893 1.82898 1.19584 1.41825 0.95582 0.88646 0.95099 0.92699 0.91124 0.90229 0.91682 0.91178 0.89682 0.90088 0.91775 0.90717 0.90651 0.90502 0.93326 0.88520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.34 8.90 37.16 0.33 -3.00 16 2 C 0.06 1.54 2.75 -92.92 -0.26 1.28 16 3 H 0.06 1.73 8.14 -51.93 -0.42 1.31 16 4 C -0.51 -14.88 8.38 -34.44 -0.29 -15.17 16 5 H 0.07 2.24 6.76 -52.49 -0.35 1.88 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.51 11.30 55.43 0.63 -24.88 16 8 Si 0.91 21.97 29.54 -169.99 -5.02 16.95 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 C 0.47 11.58 7.25 36.00 0.26 11.84 16 13 O -0.52 -13.85 15.21 -18.75 -0.29 -14.13 16 14 O -0.36 -7.72 10.09 -42.02 -0.42 -8.15 16 15 C 0.06 1.09 5.84 37.16 0.22 1.30 16 16 C 0.07 0.91 6.20 37.16 0.23 1.14 16 17 O -0.35 -5.49 10.23 -62.04 -0.63 -6.12 16 18 C 0.26 3.10 3.16 37.20 0.12 3.22 16 19 H 0.05 0.49 8.09 -51.93 -0.42 0.07 16 20 C -0.14 -1.46 5.79 -26.59 -0.15 -1.61 16 21 C -0.12 -0.89 6.03 -26.55 -0.16 -1.05 16 22 C -0.16 -1.20 6.14 -26.60 -0.16 -1.37 16 23 C 0.07 0.62 6.84 37.20 0.25 0.88 16 24 O -0.40 -5.24 10.25 -59.04 -0.60 -5.84 16 25 H 0.03 0.59 8.11 -51.93 -0.42 0.17 16 26 H 0.10 2.55 6.05 -51.93 -0.31 2.24 16 27 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.07 1.20 8.13 -51.93 -0.42 0.78 16 30 H 0.08 1.23 8.13 -51.93 -0.42 0.81 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.99 7.89 -51.93 -0.41 0.58 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 331.54 15.07 5.00 5.00 Total: -1.00 -32.74 331.54 -7.60 -40.34 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -6.55 Total: -2.26 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: 0.30 Total: -0.91 kcal Atomic # 7 Polarization: -25.51 SS G_CDS: 0.63 Total: -24.88 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -1.95 Total: -34.24 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.74 -7.60 -40.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849853459.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.320 kcal (2) G-P(sol) polarization free energy of solvation -32.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds