Wall clock time and date at job start Mon Mar 30 2020 05:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47000 * 2 1 4 4 C 1.50706 * 109.46859 * 240.00919 * 2 1 3 5 5 H 1.08000 * 119.99302 * 239.99789 * 4 2 1 6 6 C 1.37871 * 120.00436 * 59.72322 * 4 2 1 7 7 N 1.31515 * 119.99684 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47050 * 59.99579 * 8 6 4 10 10 H 1.48496 * 109.47289 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46492 * 299.99554 * 8 6 4 12 12 C 1.50696 * 109.47505 * 120.00678 * 2 1 3 13 13 O 1.20827 * 120.00035 * 119.99773 * 12 2 1 14 14 O 1.34227 * 119.99746 * 300.00063 * 12 2 1 15 15 C 1.45200 * 116.99882 * 180.02562 * 14 12 2 16 16 C 1.53005 * 109.47208 * 180.02562 * 15 14 12 17 17 O 1.42897 * 109.46973 * 64.99701 * 16 15 14 18 18 C 1.42899 * 113.99898 * 179.97438 * 17 16 15 19 19 H 1.09004 * 109.48500 * 310.00164 * 18 17 16 20 20 C 1.53086 * 109.48518 * 189.97577 * 18 17 16 21 21 C 1.53181 * 109.16817 * 182.42171 * 20 18 17 22 22 C 1.53176 * 109.04237 * 56.95952 * 21 20 18 23 23 C 1.53088 * 109.16744 * 303.02873 * 22 21 20 24 24 O 1.42903 * 109.41528 * 57.60945 * 23 22 21 25 25 H 1.09002 * 109.46917 * 299.99220 * 1 2 3 26 26 H 1.08995 * 109.47505 * 59.99513 * 1 2 3 27 27 H 1.09001 * 109.47000 * 179.97438 * 1 2 3 28 28 H 0.97004 * 120.00247 * 180.02562 * 7 6 4 29 29 H 1.09005 * 109.47023 * 299.99765 * 15 14 12 30 30 H 1.08994 * 109.47708 * 59.99591 * 15 14 12 31 31 H 1.09002 * 109.46974 * 184.99783 * 16 15 14 32 32 H 1.08997 * 109.46965 * 304.99375 * 16 15 14 33 33 H 1.09000 * 109.52481 * 302.31984 * 20 18 17 34 34 H 1.09007 * 109.52168 * 62.50436 * 20 18 17 35 35 H 1.09003 * 109.53134 * 297.09759 * 21 20 18 36 36 H 1.08991 * 109.61787 * 176.88153 * 21 20 18 37 37 H 1.09003 * 109.52052 * 183.12164 * 22 21 20 38 38 H 1.09001 * 109.57258 * 62.96919 * 22 21 20 39 39 H 1.08994 * 109.48192 * 297.62708 * 23 22 21 40 40 H 1.09000 * 109.48659 * 177.59650 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 1 2.6532 -1.5883 -1.1316 6 6 1.6945 -0.2424 -2.4828 7 7 0.9335 0.8234 -2.6033 8 14 2.3165 -1.1232 -4.0082 9 1 1.8265 -2.5250 -4.0047 10 1 1.8156 -0.4272 -5.2205 11 1 3.8015 -1.1178 -4.0118 12 6 2.0324 -0.7105 1.2303 13 8 2.7270 -1.6929 1.1193 14 8 1.7081 -0.2520 2.4495 15 6 2.2278 -0.9860 3.5894 16 6 1.7557 -0.3197 4.8833 17 8 0.3340 -0.4250 4.9820 18 6 -0.2122 0.1686 6.1615 19 1 0.3329 -0.1897 7.0348 20 6 -1.6889 -0.2143 6.2890 21 6 -2.2825 0.4744 7.5218 22 6 -2.0831 1.9877 7.3933 23 6 -0.5911 2.2854 7.2234 24 8 -0.0955 1.5904 6.0773 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 0.6955 1.1524 -3.4842 29 1 1.8644 -2.0132 3.5566 30 1 3.3173 -0.9849 3.5563 31 1 2.2170 -0.8163 5.7370 32 1 2.0425 0.7318 4.8761 33 1 -2.2271 0.1078 5.3975 34 1 -1.7768 -1.2954 6.3978 35 1 -1.7778 0.1149 8.4185 36 1 -3.3473 0.2512 7.5885 37 1 -2.4531 2.4814 8.2920 38 1 -2.6292 2.3555 6.5247 39 1 -0.0512 1.9548 8.1106 40 1 -0.4473 3.3575 7.0888 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849853459.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:45 Heat of formation + Delta-G solvation = -217.381214 kcal Electronic energy + Delta-G solvation = -21297.792659 eV Core-core repulsion = 17883.487909 eV Total energy + Delta-G solvation = -3414.304750 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.35031 -40.60679 -38.32198 -37.20588 -35.92472 -34.65835 -32.83673 -31.98137 -30.39981 -27.29256 -25.83249 -25.24378 -24.21953 -23.45696 -21.62468 -21.22779 -18.77231 -18.49166 -18.11827 -17.74785 -17.50653 -17.19678 -16.66161 -16.15763 -15.65610 -15.30175 -15.20886 -14.84978 -14.72642 -14.21511 -13.97387 -13.67937 -13.48860 -13.45761 -12.98159 -12.91480 -12.70084 -12.61126 -12.30850 -12.19315 -12.11949 -12.04141 -11.85541 -11.63388 -11.51402 -11.12918 -11.07746 -10.82162 -10.53143 -10.45622 -8.19442 -6.33757 1.41935 1.43201 1.45992 1.53059 1.92398 2.27058 2.44620 2.98274 3.09979 3.76772 3.78855 3.89858 4.00791 4.01167 4.04091 4.11788 4.15346 4.34119 4.43288 4.50901 4.66067 4.66358 4.71029 4.78659 4.85695 4.89798 4.99694 5.02651 5.09950 5.12676 5.35280 5.37340 5.47557 5.68173 5.87007 5.99675 6.09243 6.33262 6.72475 7.04963 7.34985 8.87007 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.032519 B = 0.003485 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.820235 B = 8031.974568 C = 8462.183696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.049 3.951 3 H 0.049 0.951 4 C -0.541 4.541 5 H 0.058 0.942 6 C 0.021 3.979 7 N -0.910 5.910 8 Si 0.967 3.033 9 H -0.273 1.273 10 H -0.273 1.273 11 H -0.272 1.272 12 C 0.472 3.528 13 O -0.544 6.544 14 O -0.360 6.360 15 C 0.055 3.945 16 C 0.072 3.928 17 O -0.388 6.388 18 C 0.248 3.752 19 H 0.077 0.923 20 C -0.144 4.144 21 C -0.114 4.114 22 C -0.159 4.159 23 C 0.063 3.937 24 O -0.434 6.434 25 H 0.042 0.958 26 H 0.079 0.921 27 H 0.027 0.973 28 H 0.269 0.731 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.059 0.941 39 H 0.070 0.930 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.941 1.667 23.698 24.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.030 3.970 3 H 0.067 0.933 4 C -0.579 4.579 5 H 0.076 0.924 6 C -0.179 4.179 7 N -0.548 5.548 8 Si 0.792 3.208 9 H -0.198 1.198 10 H -0.198 1.198 11 H -0.198 1.198 12 C 0.318 3.682 13 O -0.434 6.434 14 O -0.277 6.277 15 C -0.018 4.018 16 C -0.004 4.004 17 O -0.308 6.308 18 C 0.153 3.847 19 H 0.094 0.906 20 C -0.182 4.182 21 C -0.151 4.151 22 C -0.197 4.197 23 C -0.013 4.013 24 O -0.356 6.356 25 H 0.061 0.939 26 H 0.098 0.902 27 H 0.046 0.954 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.113 0.887 31 H 0.127 0.873 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.106 0.894 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.119 0.881 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.856 1.488 23.278 23.826 hybrid contribution 0.459 -0.463 -0.690 0.949 sum -4.397 1.025 22.588 23.035 Atomic orbital electron populations 1.21530 0.94613 0.99713 1.01710 1.18670 0.95746 0.96159 0.86413 0.93296 1.21238 1.32734 1.13462 0.90470 0.92417 1.25691 0.94816 0.95675 1.01684 1.69966 1.36333 1.23676 1.24852 0.85474 0.78753 0.78610 0.77997 1.19849 1.19784 1.19758 1.24818 0.75926 0.82556 0.84907 1.90457 1.37639 1.27743 1.87517 1.86643 1.70087 1.55744 1.15258 1.23294 0.99467 0.96070 0.83011 1.22647 0.81137 1.01385 0.95241 1.88085 1.22028 1.75425 1.45242 1.23219 0.94746 0.79608 0.87116 0.90588 1.22083 0.93516 1.02417 1.00156 1.21596 1.02362 0.94584 0.96585 1.22252 0.96812 0.97043 1.03571 1.22769 0.93869 0.97373 0.87301 1.87841 1.83551 1.20163 1.44084 0.93946 0.90222 0.95386 0.92206 0.91291 0.88729 0.87306 0.91708 0.92325 0.89384 0.89802 0.89603 0.88065 0.92250 0.91201 0.87951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.02 8.90 71.98 0.64 -5.38 16 2 C 0.05 2.69 2.75 -12.29 -0.03 2.65 16 3 H 0.05 2.78 8.14 -2.39 -0.02 2.76 16 4 C -0.54 -32.00 8.38 25.60 0.21 -31.79 16 5 H 0.06 3.54 6.76 -2.91 -0.02 3.52 16 6 C 0.02 1.20 5.30 84.65 0.45 1.65 16 7 N -0.91 -52.17 11.30 21.45 0.24 -51.92 16 8 Si 0.97 44.90 29.54 68.60 2.03 46.93 16 9 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 12 C 0.47 23.88 7.25 71.23 0.52 24.39 16 13 O -0.54 -29.24 15.21 21.96 0.33 -28.91 16 14 O -0.36 -15.69 10.09 -48.75 -0.49 -16.18 16 15 C 0.06 1.82 5.84 71.98 0.42 2.24 16 16 C 0.07 1.87 6.20 71.98 0.45 2.32 16 17 O -0.39 -11.70 10.23 -123.34 -1.26 -12.97 16 18 C 0.25 5.67 3.16 72.01 0.23 5.90 16 19 H 0.08 1.29 8.09 -2.39 -0.02 1.28 16 20 C -0.14 -2.80 5.79 30.68 0.18 -2.62 16 21 C -0.11 -1.43 6.03 30.71 0.19 -1.24 16 22 C -0.16 -2.07 6.14 30.68 0.19 -1.88 16 23 C 0.06 0.97 6.84 72.01 0.49 1.47 16 24 O -0.43 -10.94 10.25 -126.21 -1.29 -12.24 16 25 H 0.04 1.96 8.11 -2.39 -0.02 1.94 16 26 H 0.08 4.32 6.05 -2.39 -0.01 4.30 16 27 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 29 H 0.07 2.30 8.13 -2.38 -0.02 2.28 16 30 H 0.09 2.82 8.13 -2.39 -0.02 2.80 16 31 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.06 1.76 7.89 -2.39 -0.02 1.74 16 33 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 35 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -70.92 331.54 4.49 -66.43 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: 1.01 Total: 11.16 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: 3.93 Total: -2.29 kcal Atomic # 7 Polarization: -52.17 SS G_CDS: 0.24 Total: -51.92 kcal Atomic # 8 Polarization: -67.58 SS G_CDS: -2.71 Total: -70.30 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -70.92 4.49 -66.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849853459.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.953 kcal (2) G-P(sol) polarization free energy of solvation -70.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds