Wall clock time and date at job start Mon Mar 30 2020 05:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47523 * 2 1 4 4 C 1.50709 * 109.46783 * 119.99341 * 2 1 3 5 5 H 1.08000 * 120.00050 * 120.00053 * 4 2 1 6 6 C 1.37871 * 119.99906 * 300.00035 * 4 2 1 7 7 N 1.31517 * 119.99893 * 180.02562 * 6 4 2 8 8 Si 1.86799 * 120.00221 * 359.97438 * 6 4 2 9 9 H 1.48505 * 109.47150 * 90.00155 * 8 6 4 10 10 H 1.48500 * 109.47501 * 209.99868 * 8 6 4 11 11 H 1.48498 * 109.47266 * 330.00386 * 8 6 4 12 12 C 1.50705 * 109.47279 * 239.98883 * 2 1 3 13 13 O 1.20825 * 120.00202 * 240.00127 * 12 2 1 14 14 O 1.34231 * 119.99604 * 60.00804 * 12 2 1 15 15 C 1.45201 * 116.99817 * 179.97438 * 14 12 2 16 16 C 1.52997 * 109.46828 * 179.97438 * 15 14 12 17 17 O 1.42895 * 109.47456 * 65.00328 * 16 15 14 18 18 C 1.42897 * 114.00383 * 180.02562 * 17 16 15 19 19 H 1.09002 * 109.48170 * 54.99805 * 18 17 16 20 20 C 1.53098 * 109.48005 * 175.02232 * 18 17 16 21 21 C 1.53178 * 109.15976 * 177.60179 * 20 18 17 22 22 C 1.53179 * 109.03547 * 303.01729 * 21 20 18 23 23 C 1.53088 * 109.16372 * 56.98571 * 22 21 20 24 24 O 1.42903 * 109.48597 * 294.96962 * 18 17 16 25 25 H 1.09004 * 109.46569 * 60.00914 * 1 2 3 26 26 H 1.08997 * 109.47554 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47148 * 300.00864 * 1 2 3 28 28 H 0.97006 * 120.00008 * 180.02562 * 7 6 4 29 29 H 1.08998 * 109.46863 * 60.00116 * 15 14 12 30 30 H 1.08997 * 109.47003 * 300.00231 * 15 14 12 31 31 H 1.09005 * 109.47228 * 305.00107 * 16 15 14 32 32 H 1.09001 * 109.46804 * 185.00647 * 16 15 14 33 33 H 1.08990 * 109.52021 * 297.50387 * 20 18 17 34 34 H 1.08999 * 109.52366 * 57.63314 * 20 18 17 35 35 H 1.09000 * 109.54595 * 62.88180 * 21 20 18 36 36 H 1.08993 * 109.54622 * 183.15317 * 21 20 18 37 37 H 1.09004 * 109.52091 * 176.88375 * 22 21 20 38 38 H 1.08992 * 109.52309 * 297.01273 * 22 21 20 39 39 H 1.08998 * 109.48639 * 62.37353 * 23 22 21 40 40 H 1.09000 * 109.48485 * 182.39627 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1317 6 6 1.6991 -0.2391 2.4828 7 7 2.1379 -0.8587 3.5567 8 14 0.6258 1.2801 2.6540 9 1 -0.8022 0.8748 2.6992 10 1 0.9770 1.9958 3.9068 11 1 0.8491 2.1775 1.4920 12 6 2.0324 -0.7107 -1.2304 13 8 2.7270 -1.6930 -1.1193 14 8 1.7082 -0.2521 -2.4496 15 6 2.2278 -0.9862 -3.5895 16 6 1.7558 -0.3198 -4.8833 17 8 2.3272 0.9862 -4.9824 18 6 1.9474 1.6989 -6.1613 19 1 0.8601 1.7423 -6.2254 20 6 2.5126 3.1205 -6.1028 21 6 2.1523 3.8584 -7.3959 22 6 2.6931 3.0664 -8.5903 23 6 2.1210 1.6470 -8.5528 24 8 2.4662 1.0283 -7.3116 25 1 -0.3632 0.5137 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8899 28 1 1.9032 -0.5274 4.4377 29 1 1.8643 -2.0132 -3.5566 30 1 3.3173 -0.9852 -3.5563 31 1 0.6686 -0.2412 -4.8758 32 1 2.0708 -0.9200 -5.7369 33 1 2.0839 3.6481 -5.2509 34 1 3.5965 3.0775 -5.9968 35 1 1.0687 3.9451 -7.4765 36 1 2.5991 4.8524 -7.3851 37 1 2.3935 3.5554 -9.5173 38 1 3.7809 3.0233 -8.5363 39 1 1.0360 1.6896 -8.6482 40 1 2.5357 1.0659 -9.3765 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849853461.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:50 Heat of formation + Delta-G solvation = -189.104009 kcal Electronic energy + Delta-G solvation = -21223.932968 eV Core-core repulsion = 17810.854410 eV Total energy + Delta-G solvation = -3413.078559 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.96321 -39.57833 -37.27231 -35.65829 -34.02292 -33.93790 -31.50753 -31.06523 -29.45008 -25.15873 -25.11606 -23.87067 -23.51360 -22.12815 -20.61274 -19.76671 -17.73886 -17.14325 -16.87659 -16.37519 -16.07785 -15.63285 -15.50184 -15.06367 -14.65915 -14.46620 -14.08163 -13.74107 -13.35212 -13.07829 -12.97601 -12.59337 -12.38245 -12.24174 -11.70279 -11.55583 -11.53958 -11.40941 -11.20867 -11.01121 -10.88296 -10.64953 -10.34169 -10.10190 -9.98908 -9.76768 -9.64909 -9.19166 -9.12295 -8.61602 -6.09371 -4.11689 3.07426 3.21055 3.26017 3.34152 3.36981 3.41494 3.70366 4.35909 4.41598 4.45706 4.55770 4.66540 4.73434 5.00723 5.03522 5.13839 5.20525 5.21673 5.34461 5.34729 5.41405 5.51841 5.57188 5.62744 5.69862 5.77460 5.93500 5.97944 6.19206 6.35514 6.46143 6.73861 6.81768 7.04209 7.11893 7.18621 7.51986 8.43276 8.79063 9.06286 9.47759 11.03057 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.031610 B = 0.003534 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.593535 B = 7920.700747 C = 8475.508191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.025 3.975 3 H 0.064 0.936 4 C -0.517 4.517 5 H 0.094 0.906 6 C 0.074 3.926 7 N -0.893 5.893 8 Si 0.883 3.117 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.264 1.264 12 C 0.473 3.527 13 O -0.505 6.505 14 O -0.362 6.362 15 C 0.065 3.935 16 C 0.067 3.933 17 O -0.355 6.355 18 C 0.255 3.745 19 H 0.054 0.946 20 C -0.142 4.142 21 C -0.120 4.120 22 C -0.160 4.160 23 C 0.072 3.928 24 O -0.408 6.408 25 H 0.044 0.956 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.266 0.734 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.051 0.949 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.502 8.627 -24.917 26.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.005 3.995 3 H 0.082 0.918 4 C -0.555 4.555 5 H 0.112 0.888 6 C -0.128 4.128 7 N -0.530 5.530 8 Si 0.713 3.287 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.189 1.189 12 C 0.316 3.684 13 O -0.390 6.390 14 O -0.280 6.280 15 C -0.010 4.010 16 C -0.009 4.009 17 O -0.274 6.274 18 C 0.159 3.841 19 H 0.071 0.929 20 C -0.180 4.180 21 C -0.158 4.158 22 C -0.198 4.198 23 C -0.004 4.004 24 O -0.330 6.330 25 H 0.063 0.937 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.069 0.931 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.039 8.212 -24.535 26.051 hybrid contribution -0.790 0.743 -0.021 1.085 sum -3.830 8.955 -24.556 26.418 Atomic orbital electron populations 1.22083 0.96491 1.01667 0.99983 1.19127 0.93881 0.97705 0.88767 0.91831 1.20935 1.32872 1.14494 0.87165 0.88769 1.24916 0.95687 0.96641 0.95540 1.69874 1.45083 1.40131 0.97926 0.86916 0.80706 0.83720 0.77350 1.20276 1.22112 1.18900 1.24496 0.77050 0.83122 0.83714 1.90543 1.35594 1.26208 1.86694 1.86616 1.70229 1.55902 1.15252 1.22897 1.00102 0.94883 0.83081 1.22591 0.97908 0.84226 0.96206 1.88144 1.73048 1.29022 1.37201 1.22960 0.94802 0.88564 0.77747 0.92880 1.22018 1.03359 0.93800 0.98801 1.21590 1.01265 0.99273 0.93630 1.22250 1.02144 0.96412 0.99003 1.22488 0.98998 0.93379 0.85567 1.87806 1.77009 1.53427 1.14725 0.93699 0.92420 0.93055 0.92367 0.89973 0.90717 0.92189 0.90452 0.89719 0.89998 0.91572 0.90662 0.90592 0.90698 0.93109 0.88606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.61 37.16 0.32 -2.81 16 2 C 0.02 0.60 2.33 -92.92 -0.22 0.39 16 3 H 0.06 1.53 7.20 -51.93 -0.37 1.15 16 4 C -0.52 -15.11 8.95 -34.44 -0.31 -15.42 16 5 H 0.09 3.10 7.00 -52.49 -0.37 2.73 16 6 C 0.07 2.16 5.45 -17.82 -0.10 2.07 16 7 N -0.89 -27.57 13.96 55.43 0.77 -26.79 16 8 Si 0.88 21.42 24.37 -169.99 -4.14 17.28 16 9 H -0.28 -6.44 6.87 56.52 0.39 -6.05 16 10 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 11 H -0.26 -6.03 6.53 56.52 0.37 -5.67 16 12 C 0.47 11.07 7.25 36.01 0.26 11.34 16 13 O -0.50 -13.13 15.21 -18.75 -0.29 -13.41 16 14 O -0.36 -7.15 10.09 -42.03 -0.42 -7.57 16 15 C 0.06 1.04 5.84 37.16 0.22 1.25 16 16 C 0.07 0.87 6.19 37.16 0.23 1.10 16 17 O -0.36 -5.20 10.24 -62.04 -0.64 -5.83 16 18 C 0.25 2.91 3.20 37.21 0.12 3.03 16 19 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 20 C -0.14 -1.38 5.79 -26.59 -0.15 -1.53 16 21 C -0.12 -0.83 6.03 -26.55 -0.16 -0.99 16 22 C -0.16 -1.03 6.14 -26.59 -0.16 -1.19 16 23 C 0.07 0.53 6.84 37.20 0.25 0.79 16 24 O -0.41 -4.59 10.03 -59.04 -0.59 -5.18 16 25 H 0.04 0.83 8.11 -51.93 -0.42 0.40 16 26 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.05 1.13 3.27 -51.93 -0.17 0.96 16 28 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 29 H 0.08 1.21 8.13 -51.93 -0.42 0.79 16 30 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.88 7.75 -51.93 -0.40 0.47 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 324.50 15.07 4.89 4.89 Total: -1.00 -33.77 324.50 -6.52 -40.30 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -6.41 Total: -1.69 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: 0.30 Total: -1.99 kcal Atomic # 7 Polarization: -27.57 SS G_CDS: 0.77 Total: -26.79 kcal Atomic # 8 Polarization: -30.06 SS G_CDS: -1.94 Total: -32.00 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.14 Total: 17.28 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.77 -6.52 -40.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849853461.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.808 kcal (2) G-P(sol) polarization free energy of solvation -33.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds