Wall clock time and date at job start Mon Mar 30 2020 05:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47523 * 2 1 4 4 C 1.50709 * 109.46783 * 119.99341 * 2 1 3 5 5 H 1.08000 * 120.00050 * 120.00053 * 4 2 1 6 6 C 1.37871 * 119.99906 * 300.00035 * 4 2 1 7 7 N 1.31517 * 119.99893 * 180.02562 * 6 4 2 8 8 Si 1.86799 * 120.00221 * 359.97438 * 6 4 2 9 9 H 1.48505 * 109.47150 * 90.00155 * 8 6 4 10 10 H 1.48500 * 109.47501 * 209.99868 * 8 6 4 11 11 H 1.48498 * 109.47266 * 330.00386 * 8 6 4 12 12 C 1.50705 * 109.47279 * 239.98883 * 2 1 3 13 13 O 1.20825 * 120.00202 * 240.00127 * 12 2 1 14 14 O 1.34231 * 119.99604 * 60.00804 * 12 2 1 15 15 C 1.45201 * 116.99817 * 179.97438 * 14 12 2 16 16 C 1.52997 * 109.46828 * 179.97438 * 15 14 12 17 17 O 1.42895 * 109.47456 * 65.00328 * 16 15 14 18 18 C 1.42897 * 114.00383 * 180.02562 * 17 16 15 19 19 H 1.09002 * 109.48170 * 54.99805 * 18 17 16 20 20 C 1.53098 * 109.48005 * 175.02232 * 18 17 16 21 21 C 1.53178 * 109.15976 * 177.60179 * 20 18 17 22 22 C 1.53179 * 109.03547 * 303.01729 * 21 20 18 23 23 C 1.53088 * 109.16372 * 56.98571 * 22 21 20 24 24 O 1.42903 * 109.48597 * 294.96962 * 18 17 16 25 25 H 1.09004 * 109.46569 * 60.00914 * 1 2 3 26 26 H 1.08997 * 109.47554 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47148 * 300.00864 * 1 2 3 28 28 H 0.97006 * 120.00008 * 180.02562 * 7 6 4 29 29 H 1.08998 * 109.46863 * 60.00116 * 15 14 12 30 30 H 1.08997 * 109.47003 * 300.00231 * 15 14 12 31 31 H 1.09005 * 109.47228 * 305.00107 * 16 15 14 32 32 H 1.09001 * 109.46804 * 185.00647 * 16 15 14 33 33 H 1.08990 * 109.52021 * 297.50387 * 20 18 17 34 34 H 1.08999 * 109.52366 * 57.63314 * 20 18 17 35 35 H 1.09000 * 109.54595 * 62.88180 * 21 20 18 36 36 H 1.08993 * 109.54622 * 183.15317 * 21 20 18 37 37 H 1.09004 * 109.52091 * 176.88375 * 22 21 20 38 38 H 1.08992 * 109.52309 * 297.01273 * 22 21 20 39 39 H 1.08998 * 109.48639 * 62.37353 * 23 22 21 40 40 H 1.09000 * 109.48485 * 182.39627 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1317 6 6 1.6991 -0.2391 2.4828 7 7 2.1379 -0.8587 3.5567 8 14 0.6258 1.2801 2.6540 9 1 -0.8022 0.8748 2.6992 10 1 0.9770 1.9958 3.9068 11 1 0.8491 2.1775 1.4920 12 6 2.0324 -0.7107 -1.2304 13 8 2.7270 -1.6930 -1.1193 14 8 1.7082 -0.2521 -2.4496 15 6 2.2278 -0.9862 -3.5895 16 6 1.7558 -0.3198 -4.8833 17 8 2.3272 0.9862 -4.9824 18 6 1.9474 1.6989 -6.1613 19 1 0.8601 1.7423 -6.2254 20 6 2.5126 3.1205 -6.1028 21 6 2.1523 3.8584 -7.3959 22 6 2.6931 3.0664 -8.5903 23 6 2.1210 1.6470 -8.5528 24 8 2.4662 1.0283 -7.3116 25 1 -0.3632 0.5137 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8899 28 1 1.9032 -0.5274 4.4377 29 1 1.8643 -2.0132 -3.5566 30 1 3.3173 -0.9852 -3.5563 31 1 0.6686 -0.2412 -4.8758 32 1 2.0708 -0.9200 -5.7369 33 1 2.0839 3.6481 -5.2509 34 1 3.5965 3.0775 -5.9968 35 1 1.0687 3.9451 -7.4765 36 1 2.5991 4.8524 -7.3851 37 1 2.3935 3.5554 -9.5173 38 1 3.7809 3.0233 -8.5363 39 1 1.0360 1.6896 -8.6482 40 1 2.5357 1.0659 -9.3765 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849853461.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:49 Heat of formation + Delta-G solvation = -211.810701 kcal Electronic energy + Delta-G solvation = -21224.917604 eV Core-core repulsion = 17810.854410 eV Total energy + Delta-G solvation = -3414.063195 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.43183 -40.63556 -38.34625 -37.24914 -35.96314 -34.67172 -33.47660 -32.10794 -30.45207 -27.18419 -25.96282 -25.40099 -24.23330 -23.46756 -21.59302 -21.23571 -19.02210 -18.67708 -18.23066 -17.70961 -17.59409 -17.16787 -16.76862 -16.23549 -15.76704 -15.42368 -15.18962 -14.91427 -14.79685 -14.35162 -14.08419 -14.01294 -13.69412 -13.65434 -13.28926 -12.91307 -12.69406 -12.60295 -12.33186 -12.18776 -12.17370 -11.87076 -11.71097 -11.52219 -11.46992 -11.28939 -11.08586 -10.86057 -10.76526 -10.47542 -8.32026 -6.42543 1.32619 1.39425 1.41141 1.52208 1.80935 2.25200 2.32189 2.92848 3.01126 3.75199 3.79779 3.88627 3.97058 4.00448 4.01485 4.06922 4.11903 4.35941 4.37327 4.45494 4.50737 4.55242 4.56991 4.64697 4.79077 4.82133 4.85181 4.97435 5.02511 5.10059 5.11562 5.34344 5.34432 5.38900 5.48894 5.99807 6.21246 6.25874 6.69195 6.97388 7.22625 8.84940 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.031610 B = 0.003534 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.593535 B = 7920.700747 C = 8475.508191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.019 3.981 3 H 0.076 0.924 4 C -0.534 4.534 5 H 0.036 0.964 6 C 0.015 3.985 7 N -0.946 5.946 8 Si 0.956 3.044 9 H -0.254 1.254 10 H -0.294 1.294 11 H -0.235 1.235 12 C 0.478 3.522 13 O -0.543 6.543 14 O -0.352 6.352 15 C 0.057 3.943 16 C 0.075 3.925 17 O -0.387 6.387 18 C 0.250 3.750 19 H 0.069 0.931 20 C -0.143 4.143 21 C -0.116 4.116 22 C -0.158 4.158 23 C 0.063 3.937 24 O -0.430 6.430 25 H 0.083 0.917 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.271 0.729 29 H 0.095 0.905 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.099 0.901 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.828 11.026 -27.282 29.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.001 4.001 3 H 0.094 0.906 4 C -0.572 4.572 5 H 0.055 0.945 6 C -0.182 4.182 7 N -0.585 5.585 8 Si 0.780 3.220 9 H -0.180 1.180 10 H -0.222 1.222 11 H -0.158 1.158 12 C 0.323 3.677 13 O -0.432 6.432 14 O -0.269 6.269 15 C -0.016 4.016 16 C -0.001 4.001 17 O -0.307 6.307 18 C 0.155 3.845 19 H 0.087 0.913 20 C -0.181 4.181 21 C -0.154 4.154 22 C -0.195 4.195 23 C -0.013 4.013 24 O -0.353 6.353 25 H 0.102 0.898 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.113 0.887 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.114 0.886 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.118 0.882 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.376 10.622 -26.958 29.470 hybrid contribution 0.039 -0.089 0.601 0.608 sum -5.337 10.533 -26.358 28.882 Atomic orbital electron populations 1.21994 0.93501 1.02168 1.01890 1.19074 0.96215 0.97440 0.87344 0.90605 1.21033 1.32713 1.13435 0.90001 0.94538 1.25932 0.97152 1.00579 0.94566 1.70045 1.47004 1.42605 0.98826 0.85759 0.79124 0.78961 0.78187 1.17976 1.22191 1.15824 1.24273 0.76278 0.82343 0.84821 1.90534 1.37311 1.27911 1.87433 1.86563 1.69691 1.55870 1.14817 1.23264 0.99604 0.95882 0.82875 1.22578 0.98763 0.84144 0.94625 1.88096 1.73789 1.29585 1.39222 1.23166 0.95664 0.88620 0.77037 0.91338 1.22066 1.02165 0.93459 1.00436 1.21608 1.02207 0.99347 0.92198 1.22243 1.01429 0.96000 0.99859 1.22777 1.00181 0.93973 0.84322 1.87769 1.77499 1.54254 1.15750 0.89784 0.92809 0.92929 0.92005 0.88729 0.91948 0.90377 0.88557 0.89950 0.91742 0.90240 0.89653 0.88210 0.91789 0.91578 0.87380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.57 8.61 71.98 0.62 -4.95 16 2 C 0.02 0.90 2.33 -12.28 -0.03 0.87 16 3 H 0.08 3.49 7.20 -2.39 -0.02 3.47 16 4 C -0.53 -32.16 8.95 25.60 0.23 -31.93 16 5 H 0.04 2.55 7.00 -2.91 -0.02 2.53 16 6 C 0.02 0.90 5.45 84.65 0.46 1.36 16 7 N -0.95 -60.23 13.96 21.45 0.30 -59.93 16 8 Si 0.96 43.06 24.37 68.60 1.67 44.74 16 9 H -0.25 -10.58 6.87 99.48 0.68 -9.90 16 10 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 11 H -0.23 -9.45 6.53 99.48 0.65 -8.80 16 12 C 0.48 22.43 7.25 71.24 0.52 22.94 16 13 O -0.54 -29.25 15.21 21.97 0.33 -28.91 16 14 O -0.35 -13.46 10.09 -48.78 -0.49 -13.95 16 15 C 0.06 1.79 5.84 71.98 0.42 2.21 16 16 C 0.07 1.80 6.19 71.98 0.45 2.25 16 17 O -0.39 -10.81 10.24 -123.34 -1.26 -12.07 16 18 C 0.25 5.26 3.20 72.01 0.23 5.49 16 19 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 20 C -0.14 -2.59 5.79 30.69 0.18 -2.42 16 21 C -0.12 -1.32 6.03 30.71 0.19 -1.14 16 22 C -0.16 -1.62 6.14 30.68 0.19 -1.44 16 23 C 0.06 0.77 6.84 72.01 0.49 1.27 16 24 O -0.43 -8.91 10.03 -126.21 -1.27 -10.18 16 25 H 0.08 2.73 8.11 -2.38 -0.02 2.71 16 26 H 0.05 2.17 8.14 -2.39 -0.02 2.16 16 27 H 0.05 2.10 3.27 -2.39 -0.01 2.09 16 28 H 0.27 15.89 8.31 -92.70 -0.77 15.12 16 29 H 0.09 2.70 8.13 -2.39 -0.02 2.68 16 30 H 0.06 2.09 8.13 -2.39 -0.02 2.07 16 31 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 32 H 0.10 1.98 7.75 -2.39 -0.02 1.96 16 33 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.08 0.71 8.14 -2.39 -0.02 0.70 16 36 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -76.40 324.50 4.16 -72.25 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 0.93 Total: 13.55 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: 3.94 Total: -5.48 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: 0.30 Total: -59.93 kcal Atomic # 8 Polarization: -62.43 SS G_CDS: -2.69 Total: -65.12 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 1.67 Total: 44.74 kcal Total: -76.40 4.16 -72.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849853461.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.564 kcal (2) G-P(sol) polarization free energy of solvation -76.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds