Wall clock time and date at job start Mon Mar 30 2020 05:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.47481 * 2 1 4 4 C 1.50696 * 109.47456 * 120.00488 * 2 1 3 5 5 H 1.08003 * 120.00163 * 119.99777 * 4 2 1 6 6 C 1.37874 * 120.00004 * 300.00034 * 4 2 1 7 7 N 1.31511 * 119.99906 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00342 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46695 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47150 * 119.99822 * 8 6 4 11 11 H 1.48495 * 109.47270 * 240.00110 * 8 6 4 12 12 C 1.50705 * 109.46935 * 240.00432 * 2 1 3 13 13 O 1.20826 * 120.00000 * 239.99926 * 12 2 1 14 14 O 1.34226 * 120.00166 * 60.00066 * 12 2 1 15 15 C 1.45199 * 117.00345 * 180.02562 * 14 12 2 16 16 C 1.52994 * 109.47123 * 179.97438 * 15 14 12 17 17 O 1.42904 * 109.47401 * 65.00211 * 16 15 14 18 18 C 1.42902 * 113.99892 * 179.97438 * 17 16 15 19 19 H 1.08994 * 109.48295 * 310.01718 * 18 17 16 20 20 C 1.53094 * 109.47570 * 189.99629 * 18 17 16 21 21 C 1.53183 * 109.15859 * 182.40814 * 20 18 17 22 22 C 1.53176 * 109.03838 * 56.98139 * 21 20 18 23 23 C 1.53093 * 109.16348 * 303.01796 * 22 21 20 24 24 O 1.42902 * 109.48264 * 70.04261 * 18 17 16 25 25 H 1.08999 * 109.47313 * 59.99614 * 1 2 3 26 26 H 1.08997 * 109.47062 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46699 * 299.99559 * 1 2 3 28 28 H 0.97008 * 120.00689 * 180.02562 * 7 6 4 29 29 H 1.08991 * 109.46957 * 59.99548 * 15 14 12 30 30 H 1.09006 * 109.46900 * 299.99796 * 15 14 12 31 31 H 1.09001 * 109.47178 * 304.99608 * 16 15 14 32 32 H 1.09007 * 109.47220 * 184.99687 * 16 15 14 33 33 H 1.08997 * 109.52488 * 62.50901 * 20 18 17 34 34 H 1.08995 * 109.52127 * 302.30887 * 20 18 17 35 35 H 1.09002 * 109.54436 * 297.11028 * 21 20 18 36 36 H 1.09000 * 109.61273 * 176.89221 * 21 20 18 37 37 H 1.09004 * 109.52469 * 183.11228 * 22 21 20 38 38 H 1.08998 * 109.57356 * 62.95334 * 22 21 20 39 39 H 1.09002 * 109.48198 * 177.59219 * 23 22 21 40 40 H 1.08999 * 109.48029 * 297.61833 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2396 2.4826 7 7 0.9436 0.8300 2.6034 8 14 2.3215 -1.1206 4.0078 9 1 3.1466 -2.2872 3.6035 10 1 3.1467 -0.1877 4.8164 11 1 1.1662 -1.5870 4.8159 12 6 2.0323 -0.7103 -1.2306 13 8 2.7269 -1.6927 -1.1198 14 8 1.7080 -0.2517 -2.4496 15 6 2.2266 -0.9861 -3.5898 16 6 1.7546 -0.3194 -4.8834 17 8 2.3269 0.9862 -4.9828 18 6 1.9480 1.6987 -6.1622 19 1 2.1037 1.0651 -7.0353 20 6 2.8009 2.9635 -6.2906 21 6 2.3483 3.7521 -7.5234 22 6 0.8551 4.0683 -7.3938 23 6 0.0775 2.7608 -7.2228 24 8 0.5686 2.0621 -6.0770 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 0.7096 1.1616 3.4845 29 1 1.8624 -2.0128 -3.5567 30 1 3.3162 -0.9858 -3.5570 31 1 0.6675 -0.2401 -4.8756 32 1 2.0689 -0.9198 -5.7372 33 1 3.8493 2.6864 -6.4002 34 1 2.6768 3.5784 -5.3992 35 1 2.5183 3.1561 -8.4201 36 1 2.9134 4.6817 -7.5909 37 1 0.5121 4.5813 -8.2923 38 1 0.6910 4.7060 -6.5252 39 1 -0.9811 2.9825 -7.0872 40 1 0.2084 2.1413 -8.1100 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849853462.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:51 Heat of formation + Delta-G solvation = -217.626921 kcal Electronic energy + Delta-G solvation = -21254.075818 eV Core-core repulsion = 17839.760413 eV Total energy + Delta-G solvation = -3414.315405 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.35121 -40.60931 -38.32414 -37.20664 -35.92392 -34.66107 -32.83928 -31.98395 -30.40308 -27.29423 -25.83418 -25.23795 -24.22167 -23.46293 -21.62352 -21.23052 -18.70648 -18.59873 -18.11922 -17.69654 -17.56669 -17.10454 -16.68458 -16.22037 -15.65951 -15.34229 -15.18634 -14.73978 -14.68344 -14.39167 -13.81861 -13.72215 -13.66986 -13.34194 -12.99227 -12.90012 -12.69501 -12.60644 -12.30834 -12.19286 -12.12141 -12.05910 -11.85811 -11.64000 -11.51428 -11.10644 -11.07463 -10.82706 -10.53681 -10.45794 -8.20008 -6.33997 1.40948 1.42347 1.44496 1.56099 1.92419 2.26823 2.44516 2.98122 3.09581 3.76624 3.78564 3.89654 4.00479 4.00918 4.03971 4.11809 4.15143 4.34110 4.43235 4.51019 4.65841 4.67622 4.70123 4.78404 4.85457 4.89765 4.99547 5.02362 5.09624 5.12438 5.35044 5.37768 5.47701 5.68431 5.87599 5.99384 6.09271 6.33079 6.72904 7.05019 7.34912 8.86972 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.031518 B = 0.003441 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.180349 B = 8134.712146 C = 8474.798103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.048 3.952 3 H 0.046 0.954 4 C -0.539 4.539 5 H 0.057 0.943 6 C 0.021 3.979 7 N -0.910 5.910 8 Si 0.967 3.033 9 H -0.275 1.275 10 H -0.273 1.273 11 H -0.271 1.271 12 C 0.472 3.528 13 O -0.544 6.544 14 O -0.360 6.360 15 C 0.055 3.945 16 C 0.072 3.928 17 O -0.389 6.389 18 C 0.248 3.752 19 H 0.077 0.923 20 C -0.144 4.144 21 C -0.114 4.114 22 C -0.159 4.159 23 C 0.062 3.938 24 O -0.434 6.434 25 H 0.044 0.956 26 H 0.031 0.969 27 H 0.078 0.922 28 H 0.268 0.732 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.058 0.942 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.059 0.941 39 H 0.103 0.897 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.674 4.714 -23.727 24.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.029 3.971 3 H 0.063 0.937 4 C -0.577 4.577 5 H 0.075 0.925 6 C -0.179 4.179 7 N -0.549 5.549 8 Si 0.792 3.208 9 H -0.200 1.200 10 H -0.198 1.198 11 H -0.196 1.196 12 C 0.318 3.682 13 O -0.434 6.434 14 O -0.277 6.277 15 C -0.018 4.018 16 C -0.004 4.004 17 O -0.309 6.309 18 C 0.153 3.847 19 H 0.094 0.906 20 C -0.182 4.182 21 C -0.151 4.151 22 C -0.197 4.197 23 C -0.013 4.013 24 O -0.356 6.356 25 H 0.063 0.937 26 H 0.050 0.950 27 H 0.097 0.903 28 H 0.078 0.922 29 H 0.113 0.887 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.127 0.873 33 H 0.106 0.894 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.120 0.880 38 H 0.077 0.923 39 H 0.121 0.879 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.532 4.566 -23.311 23.760 hybrid contribution 0.393 -0.490 0.707 0.946 sum -0.139 4.076 -22.604 22.969 Atomic orbital electron populations 1.21539 0.94348 0.99945 1.01809 1.18681 0.95986 0.95996 0.86425 0.93654 1.21289 1.32642 1.13285 0.90456 0.92462 1.25695 0.94858 0.95670 1.01704 1.69982 1.36721 1.23451 1.24720 0.85363 0.78384 0.78479 0.78573 1.20014 1.19839 1.19627 1.24818 0.76008 0.82461 0.84907 1.90459 1.37561 1.27831 1.87520 1.86642 1.69833 1.56000 1.15253 1.23291 0.99764 0.95773 0.83009 1.22651 0.98878 0.83637 0.95245 1.88085 1.68289 1.29200 1.45291 1.23218 0.81708 0.92650 0.87110 0.90558 1.22085 1.00376 0.95583 1.00149 1.21598 0.96019 1.00935 0.96578 1.22254 0.95829 0.98034 1.03569 1.22773 0.98978 0.92252 0.87311 1.87840 1.27052 1.76645 1.44092 0.93715 0.94962 0.90346 0.92230 0.88737 0.91293 0.91662 0.87298 0.89379 0.92359 0.89780 0.89610 0.88050 0.92264 0.87932 0.91185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.94 8.90 71.98 0.64 -5.30 16 2 C 0.05 2.63 2.74 -12.29 -0.03 2.60 16 3 H 0.05 2.62 8.14 -2.38 -0.02 2.60 16 4 C -0.54 -31.89 8.37 25.60 0.21 -31.68 16 5 H 0.06 3.54 6.76 -2.91 -0.02 3.52 16 6 C 0.02 1.16 5.30 84.65 0.45 1.61 16 7 N -0.91 -52.19 11.32 21.45 0.24 -51.95 16 8 Si 0.97 44.95 29.54 68.60 2.03 46.98 16 9 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 10 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 12 C 0.47 23.90 7.25 71.24 0.52 24.41 16 13 O -0.54 -29.30 15.21 21.96 0.33 -28.97 16 14 O -0.36 -15.69 10.09 -48.73 -0.49 -16.18 16 15 C 0.06 1.82 5.84 71.98 0.42 2.25 16 16 C 0.07 1.87 6.20 71.98 0.45 2.32 16 17 O -0.39 -11.76 10.23 -123.34 -1.26 -13.02 16 18 C 0.25 5.68 3.16 72.01 0.23 5.91 16 19 H 0.08 1.30 8.09 -2.39 -0.02 1.28 16 20 C -0.14 -2.81 5.79 30.69 0.18 -2.64 16 21 C -0.11 -1.43 6.03 30.71 0.19 -1.25 16 22 C -0.16 -2.07 6.14 30.68 0.19 -1.88 16 23 C 0.06 0.97 6.84 72.01 0.49 1.46 16 24 O -0.43 -10.94 10.25 -126.21 -1.29 -12.24 16 25 H 0.04 2.00 8.11 -2.39 -0.02 1.98 16 26 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.08 4.20 6.07 -2.39 -0.01 4.19 16 28 H 0.27 14.38 8.31 -92.70 -0.77 13.61 16 29 H 0.09 2.82 8.13 -2.39 -0.02 2.80 16 30 H 0.07 2.30 8.13 -2.38 -0.02 2.28 16 31 H 0.07 1.77 7.89 -2.39 -0.02 1.75 16 32 H 0.11 1.90 8.14 -2.38 -0.02 1.88 16 33 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -71.21 331.58 4.49 -66.72 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: 1.01 Total: 10.85 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: 3.93 Total: -2.19 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: 0.24 Total: -51.95 kcal Atomic # 8 Polarization: -67.70 SS G_CDS: -2.71 Total: -70.41 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -71.21 4.49 -66.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849853462.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.904 kcal (2) G-P(sol) polarization free energy of solvation -71.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds