Wall clock time and date at job start Mon Mar 30 2020 05:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99874 * 2 1 4 4 H 1.09002 * 109.47259 * 30.00319 * 3 2 1 5 5 C 1.50703 * 109.47171 * 270.00168 * 3 2 1 6 6 O 1.20827 * 119.99798 * 355.00249 * 5 3 2 7 7 O 1.34228 * 119.99937 * 175.00173 * 5 3 2 8 8 C 1.45203 * 117.00113 * 179.97438 * 7 5 3 9 9 C 1.52995 * 109.47323 * 180.02562 * 8 7 5 10 10 C 1.52996 * 109.47194 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.47248 * 179.97438 * 10 9 8 12 12 H 1.08004 * 120.00035 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00048 * 179.97438 * 11 10 9 14 14 N 1.31509 * 120.00213 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00043 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47232 * 89.99750 * 15 13 11 17 17 H 1.48500 * 109.47355 * 210.00248 * 15 13 11 18 18 H 1.48499 * 109.46918 * 330.00201 * 15 13 11 19 19 C 1.53002 * 109.47113 * 150.00334 * 3 2 1 20 20 H 1.08999 * 110.43380 * 58.90333 * 19 3 2 21 21 C 1.54814 * 110.48661 * 296.22105 * 19 3 2 22 22 C 1.54995 * 102.09234 * 220.44321 * 21 19 3 23 23 O 1.44378 * 103.49017 * 37.02269 * 22 21 19 24 24 C 1.43748 * 106.97616 * 319.94003 * 23 22 21 25 25 H 1.08997 * 109.47374 * 59.99540 * 1 2 3 26 26 H 1.09001 * 109.47118 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47082 * 300.00110 * 1 2 3 28 28 H 1.09003 * 109.46707 * 300.00043 * 8 7 5 29 29 H 1.09002 * 109.47084 * 59.99834 * 8 7 5 30 30 H 1.09003 * 109.46946 * 300.00398 * 9 8 7 31 31 H 1.09002 * 109.47259 * 59.99840 * 9 8 7 32 32 H 1.09003 * 109.47216 * 299.99599 * 10 9 8 33 33 H 1.09002 * 109.47142 * 59.99776 * 10 9 8 34 34 H 0.96996 * 120.00513 * 179.97438 * 14 13 11 35 35 H 1.09000 * 110.90509 * 338.64221 * 21 19 3 36 36 H 1.09000 * 110.90754 * 102.23908 * 21 19 3 37 37 H 1.08995 * 110.61806 * 278.52134 * 22 21 19 38 38 H 1.09005 * 110.61691 * 155.52311 * 22 21 19 39 39 H 1.08999 * 109.87817 * 267.09039 * 24 23 22 40 40 H 1.08997 * 109.87752 * 145.93828 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5139 5 6 2.2145 1.7644 -1.4208 6 8 1.9799 1.0134 -2.3379 7 8 2.6570 3.0074 -1.6676 8 6 2.8311 3.3809 -3.0599 9 6 3.3385 4.8220 -3.1417 10 6 3.5225 5.2153 -4.6087 11 6 4.0217 6.6350 -4.6894 12 1 4.1911 7.2001 -3.7847 13 6 4.2631 7.2122 -5.9180 14 7 4.0573 6.5240 -7.0196 15 14 4.8824 8.9716 -6.0180 16 1 6.3674 8.9754 -6.0022 17 1 4.3991 9.5959 -7.2757 18 1 4.3732 9.7424 -4.8553 19 6 3.3589 1.2633 0.7212 20 1 4.0307 0.5586 0.2310 21 6 3.1657 0.8857 2.2101 22 6 4.1715 1.8292 2.9175 23 8 4.0867 3.0488 2.1495 24 6 3.9904 2.6681 0.7667 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 3.5557 2.7139 -3.5270 29 1 1.8763 3.3014 -3.5795 30 1 2.6143 5.4892 -2.6743 31 1 4.2934 4.9011 -2.6221 32 1 4.2470 4.5481 -5.0757 33 1 2.5678 5.1362 -5.1287 34 1 4.2267 6.9301 -7.8840 35 1 2.1455 1.0913 2.5342 36 1 3.4242 -0.1589 2.3832 37 1 5.1798 1.4175 2.8739 38 1 3.8717 2.0046 3.9507 39 1 4.9841 2.6425 0.3193 40 1 3.3585 3.3761 0.2305 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849866177.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:44 Heat of formation + Delta-G solvation = -191.907959 kcal Electronic energy + Delta-G solvation = -21368.951552 eV Core-core repulsion = 17955.751405 eV Total energy + Delta-G solvation = -3413.200147 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.86239 -39.37399 -38.02264 -36.28562 -34.06376 -33.22838 -31.71769 -30.18897 -27.70887 -27.21446 -25.90809 -23.55098 -22.83660 -21.41312 -20.69445 -20.24666 -18.08412 -17.20563 -17.02535 -16.62725 -16.16143 -15.83807 -15.76287 -15.41295 -14.78169 -14.47796 -14.36138 -13.99555 -13.51806 -13.09684 -12.60081 -12.29949 -12.18135 -12.04273 -11.90859 -11.72559 -11.58364 -11.44709 -11.05351 -10.98761 -10.90862 -10.65269 -10.62036 -10.43313 -9.91660 -9.82485 -9.75204 -9.45656 -9.17152 -8.39749 -6.04425 -4.07603 2.16190 2.58549 3.27685 3.30857 3.37079 3.40709 3.75252 4.21569 4.33213 4.42949 4.58173 4.72584 4.76601 4.90979 4.94825 5.00209 5.13091 5.26313 5.31644 5.40600 5.45869 5.51215 5.53680 5.58276 5.60556 5.73153 5.90200 5.99005 6.41344 6.50953 6.58394 6.66985 6.79618 6.95599 7.58639 7.69135 7.82933 7.93708 8.34552 8.98710 9.56915 11.07021 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.023592 B = 0.003656 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.555770 B = 7656.277729 C = 8623.403647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.353 6.353 3 C 0.110 3.890 4 H 0.102 0.898 5 C 0.430 3.570 6 O -0.493 6.493 7 O -0.356 6.356 8 C 0.066 3.934 9 C -0.109 4.109 10 C 0.024 3.976 11 C -0.522 4.522 12 H 0.058 0.942 13 C 0.057 3.943 14 N -0.895 5.895 15 Si 0.895 3.105 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.273 1.273 19 C -0.116 4.116 20 H 0.098 0.902 21 C -0.140 4.140 22 C 0.043 3.957 23 O -0.374 6.374 24 C 0.045 3.955 25 H 0.047 0.953 26 H 0.094 0.906 27 H 0.047 0.953 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.019 0.981 33 H 0.019 0.981 34 H 0.262 0.738 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.062 0.938 38 H 0.094 0.906 39 H 0.070 0.930 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.385 -12.790 19.576 23.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.271 6.271 3 C 0.050 3.950 4 H 0.120 0.880 5 C 0.271 3.729 6 O -0.380 6.380 7 O -0.273 6.273 8 C -0.006 4.006 9 C -0.146 4.146 10 C -0.013 4.013 11 C -0.560 4.560 12 H 0.076 0.924 13 C -0.144 4.144 14 N -0.534 5.534 15 Si 0.723 3.277 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.135 4.135 20 H 0.116 0.884 21 C -0.178 4.178 22 C -0.034 4.034 23 O -0.293 6.293 24 C -0.032 4.032 25 H 0.066 0.934 26 H 0.112 0.888 27 H 0.065 0.935 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.038 0.962 33 H 0.037 0.963 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.080 0.920 38 H 0.112 0.888 39 H 0.088 0.912 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.330 -12.932 19.139 23.500 hybrid contribution 0.063 0.755 -0.645 0.995 sum -4.267 -12.178 18.493 22.550 Atomic orbital electron populations 1.22956 0.80068 1.03614 1.00450 1.88005 1.20578 1.24446 1.94054 1.21772 0.97146 0.86893 0.89199 0.88008 1.24371 0.74647 0.80889 0.93039 1.90673 1.46090 1.54736 1.46528 1.86501 1.76380 1.30983 1.33420 1.23556 1.01577 0.98823 0.76682 1.21775 1.00576 0.90320 1.01971 1.19054 0.97467 0.96682 0.88131 1.21172 1.44448 0.97945 0.92432 0.92383 1.25027 0.95558 0.98082 0.95777 1.69961 1.48850 1.36999 0.97573 0.86545 0.79068 0.84609 0.77511 1.20593 1.21200 1.19774 1.22578 0.94503 0.99600 0.96773 0.88394 1.23117 1.00972 1.00953 0.92715 1.23603 0.98434 0.84894 0.96453 1.88927 1.94994 1.28257 1.17082 1.23430 1.01437 0.94521 0.83777 0.93412 0.88793 0.93483 0.91439 0.91525 0.92077 0.92028 0.96242 0.96268 0.92883 0.90189 0.89514 0.92000 0.88817 0.91223 0.87131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.81 101.05 1.09 1.31 16 2 O -0.35 -4.10 9.66 -55.14 -0.53 -4.63 16 3 C 0.11 1.25 1.98 -27.88 -0.06 1.19 16 4 H 0.10 0.96 7.78 -51.93 -0.40 0.56 16 5 C 0.43 6.51 7.17 36.01 0.26 6.76 16 6 O -0.49 -9.05 16.26 -25.46 -0.41 -9.46 16 7 O -0.36 -5.64 7.61 -39.25 -0.30 -5.94 16 8 C 0.07 1.20 5.47 37.16 0.20 1.40 16 9 C -0.11 -2.22 5.53 -26.74 -0.15 -2.37 16 10 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 11 C -0.52 -14.65 9.11 -34.44 -0.31 -14.97 16 12 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.89 -26.81 13.29 55.43 0.74 -26.08 16 15 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 19 C -0.12 -1.17 2.84 -89.09 -0.25 -1.42 16 20 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 21 C -0.14 -1.08 6.50 -24.72 -0.16 -1.24 16 22 C 0.04 0.35 7.72 38.21 0.29 0.64 16 23 O -0.37 -4.42 11.52 -35.23 -0.41 -4.82 16 24 C 0.04 0.51 6.72 37.73 0.25 0.77 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.31 8.09 -51.93 -0.42 -0.11 16 28 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 29 H 0.07 1.22 8.13 -51.93 -0.42 0.80 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.08 0.57 7.86 -51.93 -0.41 0.16 16 36 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.11 1.39 5.52 -51.93 -0.29 1.10 16 LS Contribution 334.59 15.07 5.04 5.04 Total: -1.00 -32.53 334.59 -6.51 -39.05 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -6.55 Total: -3.77 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: 0.94 Total: -5.91 kcal Atomic # 7 Polarization: -26.81 SS G_CDS: 0.74 Total: -26.08 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -1.65 Total: -24.86 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.53 -6.51 -39.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849866177.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.861 kcal (2) G-P(sol) polarization free energy of solvation -32.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds