Wall clock time and date at job start Mon Mar 30 2020 05:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99874 * 2 1 4 4 H 1.09002 * 109.47259 * 30.00319 * 3 2 1 5 5 C 1.50703 * 109.47171 * 270.00168 * 3 2 1 6 6 O 1.20827 * 119.99798 * 355.00249 * 5 3 2 7 7 O 1.34228 * 119.99937 * 175.00173 * 5 3 2 8 8 C 1.45203 * 117.00113 * 179.97438 * 7 5 3 9 9 C 1.52995 * 109.47323 * 180.02562 * 8 7 5 10 10 C 1.52996 * 109.47194 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.47248 * 179.97438 * 10 9 8 12 12 H 1.08004 * 120.00035 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00048 * 179.97438 * 11 10 9 14 14 N 1.31509 * 120.00213 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00043 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47232 * 89.99750 * 15 13 11 17 17 H 1.48500 * 109.47355 * 210.00248 * 15 13 11 18 18 H 1.48499 * 109.46918 * 330.00201 * 15 13 11 19 19 C 1.53002 * 109.47113 * 150.00334 * 3 2 1 20 20 H 1.08999 * 110.43380 * 58.90333 * 19 3 2 21 21 C 1.54814 * 110.48661 * 296.22105 * 19 3 2 22 22 C 1.54995 * 102.09234 * 220.44321 * 21 19 3 23 23 O 1.44378 * 103.49017 * 37.02269 * 22 21 19 24 24 C 1.43748 * 106.97616 * 319.94003 * 23 22 21 25 25 H 1.08997 * 109.47374 * 59.99540 * 1 2 3 26 26 H 1.09001 * 109.47118 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47082 * 300.00110 * 1 2 3 28 28 H 1.09003 * 109.46707 * 300.00043 * 8 7 5 29 29 H 1.09002 * 109.47084 * 59.99834 * 8 7 5 30 30 H 1.09003 * 109.46946 * 300.00398 * 9 8 7 31 31 H 1.09002 * 109.47259 * 59.99840 * 9 8 7 32 32 H 1.09003 * 109.47216 * 299.99599 * 10 9 8 33 33 H 1.09002 * 109.47142 * 59.99776 * 10 9 8 34 34 H 0.96996 * 120.00513 * 179.97438 * 14 13 11 35 35 H 1.09000 * 110.90509 * 338.64221 * 21 19 3 36 36 H 1.09000 * 110.90754 * 102.23908 * 21 19 3 37 37 H 1.08995 * 110.61806 * 278.52134 * 22 21 19 38 38 H 1.09005 * 110.61691 * 155.52311 * 22 21 19 39 39 H 1.08999 * 109.87817 * 267.09039 * 24 23 22 40 40 H 1.08997 * 109.87752 * 145.93828 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5139 5 6 2.2145 1.7644 -1.4208 6 8 1.9799 1.0134 -2.3379 7 8 2.6570 3.0074 -1.6676 8 6 2.8311 3.3809 -3.0599 9 6 3.3385 4.8220 -3.1417 10 6 3.5225 5.2153 -4.6087 11 6 4.0217 6.6350 -4.6894 12 1 4.1911 7.2001 -3.7847 13 6 4.2631 7.2122 -5.9180 14 7 4.0573 6.5240 -7.0196 15 14 4.8824 8.9716 -6.0180 16 1 6.3674 8.9754 -6.0022 17 1 4.3991 9.5959 -7.2757 18 1 4.3732 9.7424 -4.8553 19 6 3.3589 1.2633 0.7212 20 1 4.0307 0.5586 0.2310 21 6 3.1657 0.8857 2.2101 22 6 4.1715 1.8292 2.9175 23 8 4.0867 3.0488 2.1495 24 6 3.9904 2.6681 0.7667 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 3.5557 2.7139 -3.5270 29 1 1.8763 3.3014 -3.5795 30 1 2.6143 5.4892 -2.6743 31 1 4.2934 4.9011 -2.6221 32 1 4.2470 4.5481 -5.0757 33 1 2.5678 5.1362 -5.1287 34 1 4.2267 6.9301 -7.8840 35 1 2.1455 1.0913 2.5342 36 1 3.4242 -0.1589 2.3832 37 1 5.1798 1.4175 2.8739 38 1 3.8717 2.0046 3.9507 39 1 4.9841 2.6425 0.3193 40 1 3.3585 3.3761 0.2305 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849866177.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:43 Heat of formation + Delta-G solvation = -212.149260 kcal Electronic energy + Delta-G solvation = -21369.829281 eV Core-core repulsion = 17955.751405 eV Total energy + Delta-G solvation = -3414.077876 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.99911 -40.30418 -38.96583 -37.61395 -35.97188 -34.17264 -33.58420 -30.96932 -29.11868 -28.35388 -26.96284 -25.19057 -23.79273 -22.37421 -22.21163 -21.53654 -19.22455 -18.58073 -18.11940 -18.04411 -17.51179 -16.93743 -16.65849 -16.48165 -16.21599 -15.63006 -15.49849 -15.34341 -14.63700 -14.22523 -13.95329 -13.84849 -13.71820 -13.30187 -12.87687 -12.81436 -12.69200 -12.51965 -12.35311 -12.28614 -12.22255 -12.11149 -11.97202 -11.66829 -11.57869 -11.44439 -11.28734 -10.75775 -10.62808 -10.57986 -8.22411 -6.34012 0.95067 1.38459 1.42736 1.42907 1.54478 2.40605 2.44353 3.02142 3.11667 3.29748 3.56285 3.65967 3.81458 3.96510 3.97295 4.02836 4.23573 4.28949 4.37316 4.39527 4.45503 4.50965 4.77885 4.78672 4.79315 4.80873 4.89920 4.93037 5.06260 5.06690 5.12791 5.33886 5.48983 5.62405 5.77869 5.79330 5.92230 6.18232 6.57825 6.82013 7.35751 8.89839 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.023592 B = 0.003656 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.555770 B = 7656.277729 C = 8623.403647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.366 6.366 3 C 0.118 3.882 4 H 0.127 0.873 5 C 0.428 3.572 6 O -0.529 6.529 7 O -0.348 6.348 8 C 0.076 3.924 9 C -0.093 4.093 10 C 0.025 3.975 11 C -0.543 4.543 12 H 0.066 0.934 13 C -0.001 4.001 14 N -0.934 5.934 15 Si 0.968 3.032 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.261 1.261 19 C -0.113 4.113 20 H 0.094 0.906 21 C -0.130 4.130 22 C 0.037 3.963 23 O -0.396 6.396 24 C 0.045 3.955 25 H 0.031 0.969 26 H 0.110 0.890 27 H 0.075 0.925 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.068 0.932 32 H -0.004 1.004 33 H -0.004 1.004 34 H 0.264 0.736 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.070 0.930 38 H 0.114 0.886 39 H 0.064 0.936 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.493 -12.590 21.923 25.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.283 6.283 3 C 0.058 3.942 4 H 0.144 0.856 5 C 0.271 3.729 6 O -0.418 6.418 7 O -0.265 6.265 8 C 0.002 3.998 9 C -0.130 4.130 10 C -0.012 4.012 11 C -0.581 4.581 12 H 0.084 0.916 13 C -0.199 4.199 14 N -0.574 5.574 15 Si 0.792 3.208 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.185 1.185 19 C -0.132 4.132 20 H 0.112 0.888 21 C -0.168 4.168 22 C -0.039 4.039 23 O -0.315 6.315 24 C -0.031 4.031 25 H 0.050 0.950 26 H 0.128 0.872 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.014 0.986 33 H 0.014 0.986 34 H 0.073 0.927 35 H 0.109 0.891 36 H 0.121 0.879 37 H 0.088 0.912 38 H 0.132 0.868 39 H 0.083 0.917 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.443 -12.742 21.518 25.400 hybrid contribution 0.064 0.614 -1.342 1.477 sum -4.379 -12.128 20.177 23.945 Atomic orbital electron populations 1.23183 0.78648 1.04976 1.00992 1.87997 1.22199 1.24378 1.93775 1.21930 0.98460 0.87440 0.86379 0.85598 1.25374 0.73102 0.79852 0.94525 1.90659 1.47713 1.55418 1.48011 1.86519 1.76569 1.31901 1.31520 1.23163 1.01014 0.97417 0.78157 1.21456 1.01324 0.91813 0.98450 1.18940 0.95399 0.95693 0.91156 1.21627 1.44433 0.99094 0.92939 0.91619 1.26002 0.95630 1.02869 0.95350 1.70095 1.49939 1.39147 0.98238 0.85396 0.78659 0.78852 0.77848 1.19731 1.20827 1.18503 1.22564 0.93520 0.98765 0.98399 0.88772 1.23114 1.01544 1.01730 0.90364 1.23847 0.99201 0.83778 0.97032 1.88902 1.95110 1.30296 1.17241 1.23336 1.01001 0.94899 0.83909 0.95047 0.87179 0.90685 0.92056 0.92037 0.91331 0.91286 0.98568 0.98557 0.92683 0.89093 0.87916 0.91220 0.86842 0.91741 0.88540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.81 113.37 1.23 1.50 16 2 O -0.37 -7.78 9.66 -129.95 -1.26 -9.04 16 3 C 0.12 2.48 1.98 29.85 0.06 2.54 16 4 H 0.13 2.06 7.78 -2.39 -0.02 2.04 16 5 C 0.43 12.81 7.17 71.24 0.51 13.32 16 6 O -0.53 -19.58 16.26 28.38 0.46 -19.12 16 7 O -0.35 -10.97 7.61 -51.39 -0.39 -11.37 16 8 C 0.08 2.80 5.47 71.98 0.39 3.19 16 9 C -0.09 -3.81 5.53 30.59 0.17 -3.64 16 10 C 0.03 1.33 4.97 29.85 0.15 1.48 16 11 C -0.54 -30.74 9.11 25.60 0.23 -30.50 16 12 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 13 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 14 N -0.93 -56.99 13.29 21.45 0.28 -56.70 16 15 Si 0.97 44.06 29.54 68.60 2.03 46.08 16 16 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 17 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 18 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 19 C -0.11 -2.09 2.84 -9.80 -0.03 -2.12 16 20 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 21 C -0.13 -1.62 6.50 31.90 0.21 -1.41 16 22 C 0.04 0.51 7.72 72.66 0.56 1.07 16 23 O -0.40 -8.72 11.52 -148.98 -1.72 -10.44 16 24 C 0.05 0.99 6.72 72.35 0.49 1.47 16 25 H 0.03 0.58 8.14 -2.39 -0.02 0.57 16 26 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.07 0.74 8.09 -2.39 -0.02 0.72 16 28 H 0.06 2.33 8.13 -2.39 -0.02 2.31 16 29 H 0.06 2.32 8.13 -2.39 -0.02 2.30 16 30 H 0.07 2.70 8.14 -2.39 -0.02 2.69 16 31 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 32 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 33 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 34 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 35 H 0.09 0.96 7.86 -2.39 -0.02 0.94 16 36 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 39 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.10 2.35 5.52 -2.39 -0.01 2.34 16 Total: -1.00 -70.48 334.59 4.84 -65.63 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: 1.01 Total: 7.62 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: 4.43 Total: -12.68 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: 0.28 Total: -56.70 kcal Atomic # 8 Polarization: -47.06 SS G_CDS: -2.90 Total: -49.96 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -70.48 4.84 -65.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849866177.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.515 kcal (2) G-P(sol) polarization free energy of solvation -70.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds