Wall clock time and date at job start Mon Mar 30 2020 05:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 113.99570 * 2 1 4 4 H 1.08995 * 109.47538 * 30.00417 * 3 2 1 5 5 C 1.50700 * 109.47163 * 269.99927 * 3 2 1 6 6 O 1.20822 * 119.99958 * 355.00163 * 5 3 2 7 7 O 1.34234 * 120.00068 * 175.00355 * 5 3 2 8 8 C 1.45196 * 116.99938 * 179.97438 * 7 5 3 9 9 C 1.52998 * 109.47070 * 179.97438 * 8 7 5 10 10 O 1.42899 * 109.47007 * 65.00337 * 9 8 7 11 11 C 1.42908 * 114.00004 * 180.02562 * 10 9 8 12 12 C 1.50700 * 109.46758 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00495 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99416 * 179.97438 * 12 11 10 15 15 N 1.31509 * 120.00213 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99461 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47081 * 90.00373 * 16 14 12 18 18 H 1.48504 * 109.47034 * 209.99950 * 16 14 12 19 19 H 1.48497 * 109.47345 * 329.99852 * 16 14 12 20 20 C 1.53006 * 109.47072 * 150.00300 * 3 2 1 21 21 C 1.53777 * 113.61214 * 37.49371 * 20 3 2 22 22 C 1.53786 * 87.08079 * 220.02251 * 21 20 3 23 23 C 1.53777 * 87.08046 * 25.43237 * 22 21 20 24 24 H 1.09010 * 109.47331 * 299.99831 * 1 2 3 25 25 H 1.08996 * 109.47270 * 59.99630 * 1 2 3 26 26 H 1.09003 * 109.47289 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47465 * 299.99911 * 8 7 5 28 28 H 1.08999 * 109.47008 * 59.99921 * 8 7 5 29 29 H 1.09001 * 109.47541 * 185.00107 * 9 8 7 30 30 H 1.09002 * 109.47459 * 305.00456 * 9 8 7 31 31 H 1.08995 * 109.46896 * 299.99942 * 11 10 9 32 32 H 1.09001 * 109.46731 * 60.00092 * 11 10 9 33 33 H 0.96998 * 119.99720 * 180.02562 * 15 14 12 34 34 H 1.08993 * 112.84962 * 168.80325 * 20 3 2 35 35 H 1.08995 * 113.61830 * 334.56779 * 21 20 3 36 36 H 1.09004 * 113.61537 * 105.47612 * 21 20 3 37 37 H 1.09006 * 113.61101 * 270.88483 * 22 21 20 38 38 H 1.08997 * 113.69046 * 139.99823 * 22 21 20 39 39 H 1.09001 * 113.61342 * 220.01677 * 23 22 21 40 40 H 1.09004 * 113.61371 * 89.11690 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2144 1.7644 -1.4208 6 8 1.9799 1.0135 -2.3378 7 8 2.6569 3.0075 -1.6676 8 6 2.8310 3.3809 -3.0599 9 6 3.3371 4.8224 -3.1417 10 8 4.6411 4.9030 -2.5628 11 6 5.2082 6.2146 -2.5879 12 6 6.5754 6.1828 -1.9550 13 1 6.9720 5.2540 -1.5723 14 6 7.3206 7.3394 -1.8655 15 7 6.8380 8.4704 -2.3320 16 14 9.0152 7.3002 -1.0803 17 1 10.0364 7.0178 -2.1208 18 1 9.2998 8.6150 -0.4513 19 1 9.0564 6.2368 -0.0447 20 6 3.3589 1.2634 0.7212 21 6 4.1597 -0.0221 0.4551 22 6 4.5528 0.0087 1.9415 23 6 3.2601 0.8050 2.1858 24 1 -0.3634 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 3.5556 2.7140 -3.5271 28 1 1.8762 3.3014 -3.5795 29 1 3.3833 5.1326 -4.1857 30 1 2.6570 5.4778 -2.5977 31 1 5.2930 6.5540 -3.6202 32 1 4.5666 6.8984 -2.0321 33 1 7.3625 9.2839 -2.2694 34 1 3.9389 2.1764 0.5876 35 1 3.5382 -0.8759 0.1855 36 1 5.0018 0.1204 -0.2223 37 1 5.4607 0.5780 2.1413 38 1 4.5566 -0.9735 2.4140 39 1 3.3759 1.6153 2.9057 40 1 2.3925 0.1773 2.3894 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850178275.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:39 Heat of formation + Delta-G solvation = -184.082451 kcal Electronic energy + Delta-G solvation = -21331.503650 eV Core-core repulsion = 17918.642842 eV Total energy + Delta-G solvation = -3412.860807 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.87912 -40.06080 -38.75401 -38.08580 -37.21544 -34.95336 -32.08909 -30.72686 -29.00347 -27.32780 -26.49075 -25.27120 -24.54982 -23.56534 -22.01763 -20.33407 -19.04601 -18.71603 -18.14974 -17.94331 -17.48417 -17.01518 -16.77807 -16.32521 -16.20601 -15.95752 -15.52912 -14.93816 -14.44597 -14.39919 -14.00288 -13.72120 -13.40021 -13.24164 -13.15432 -12.92292 -12.87595 -12.71253 -12.51658 -12.39119 -12.05354 -11.89731 -11.78509 -11.54001 -11.30364 -11.28475 -11.11363 -10.91761 -10.63698 -10.28050 -8.32688 -6.44834 1.01808 1.40706 1.43096 1.49246 1.55277 2.34372 2.63816 3.01501 3.03506 3.40681 3.64712 3.67319 3.83690 3.88791 3.95437 4.06450 4.14601 4.28504 4.36800 4.46987 4.48169 4.51249 4.63695 4.79830 4.81394 4.84233 4.92089 4.97262 5.09314 5.12674 5.16492 5.27753 5.35207 5.53951 5.62667 5.89002 5.94449 6.48585 6.64669 6.78688 7.26833 8.79573 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.019033 B = 0.004207 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.806443 B = 6654.421617 C = 7784.635234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.363 6.363 3 C 0.116 3.884 4 H 0.127 0.873 5 C 0.436 3.564 6 O -0.529 6.529 7 O -0.354 6.354 8 C 0.077 3.923 9 C 0.055 3.945 10 O -0.409 6.409 11 C 0.208 3.792 12 C -0.550 4.550 13 H 0.060 0.940 14 C 0.009 3.991 15 N -0.929 5.929 16 Si 0.981 3.019 17 H -0.269 1.269 18 H -0.273 1.273 19 H -0.264 1.264 20 C -0.119 4.119 21 C -0.139 4.139 22 C -0.135 4.135 23 C -0.113 4.113 24 H 0.071 0.929 25 H 0.033 0.967 26 H 0.107 0.893 27 H 0.067 0.933 28 H 0.107 0.893 29 H 0.081 0.919 30 H 0.059 0.941 31 H -0.009 1.009 32 H -0.009 1.009 33 H 0.271 0.729 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.048 0.952 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.371 -15.148 8.152 21.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.281 6.281 3 C 0.056 3.944 4 H 0.144 0.856 5 C 0.279 3.721 6 O -0.419 6.419 7 O -0.271 6.271 8 C 0.003 3.997 9 C -0.022 4.022 10 O -0.329 6.329 11 C 0.133 3.867 12 C -0.588 4.588 13 H 0.078 0.922 14 C -0.189 4.189 15 N -0.568 5.568 16 Si 0.804 3.196 17 H -0.194 1.194 18 H -0.198 1.198 19 H -0.189 1.189 20 C -0.137 4.137 21 C -0.176 4.176 22 C -0.172 4.172 23 C -0.150 4.150 24 H 0.089 0.911 25 H 0.052 0.948 26 H 0.126 0.874 27 H 0.085 0.915 28 H 0.125 0.875 29 H 0.099 0.901 30 H 0.077 0.923 31 H 0.009 0.991 32 H 0.009 0.991 33 H 0.080 0.920 34 H 0.120 0.880 35 H 0.108 0.892 36 H 0.067 0.933 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -12.203 -15.489 7.904 21.244 hybrid contribution 0.372 0.799 -0.655 1.098 sum -11.832 -14.690 7.249 20.207 Atomic orbital electron populations 1.23154 0.78968 1.04738 1.00916 1.87993 1.21855 1.24423 1.93791 1.21617 0.99004 0.87085 0.86649 0.85577 1.25288 0.72686 0.79503 0.94606 1.90614 1.48358 1.55131 1.47778 1.86597 1.76635 1.32226 1.31606 1.23184 1.01966 0.95232 0.79301 1.22630 0.85714 0.94908 0.98928 1.87867 1.30897 1.32351 1.81783 1.19880 0.92942 0.79323 0.94553 1.21377 1.01435 0.95714 1.40256 0.92192 1.25919 1.03169 0.94207 0.95655 1.70054 1.39882 1.00132 1.46769 0.85212 0.77642 0.78032 0.78721 1.19383 1.19775 1.18873 1.22834 0.92620 1.00115 0.98151 1.22886 0.99054 0.97673 0.98008 1.22761 0.98036 1.01404 0.95024 1.22856 0.98878 1.00161 0.93106 0.91059 0.94785 0.87428 0.91453 0.87478 0.90071 0.92305 0.99089 0.99130 0.91976 0.88045 0.89223 0.93307 0.90146 0.89933 0.90000 0.88347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.81 113.37 1.23 1.50 16 2 O -0.36 -8.07 8.00 -129.95 -1.04 -9.11 16 3 C 0.12 2.71 2.64 29.85 0.08 2.79 16 4 H 0.13 2.23 7.79 -2.39 -0.02 2.22 16 5 C 0.44 13.43 7.23 71.24 0.52 13.94 16 6 O -0.53 -18.71 16.25 28.39 0.46 -18.25 16 7 O -0.35 -11.96 10.18 -48.81 -0.50 -12.45 16 8 C 0.08 2.47 5.84 71.98 0.42 2.89 16 9 C 0.05 2.01 6.33 71.98 0.46 2.47 16 10 O -0.41 -20.20 10.30 -145.57 -1.50 -21.70 16 11 C 0.21 11.64 5.69 71.24 0.41 12.04 16 12 C -0.55 -32.86 9.43 25.60 0.24 -32.62 16 13 H 0.06 3.57 7.81 -2.91 -0.02 3.54 16 14 C 0.01 0.53 5.46 84.66 0.46 0.99 16 15 N -0.93 -55.41 13.29 21.45 0.28 -55.12 16 16 Si 0.98 44.17 29.54 68.60 2.03 46.19 16 17 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 18 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 19 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 20 C -0.12 -2.77 3.56 -10.27 -0.04 -2.80 16 21 C -0.14 -3.31 7.48 31.12 0.23 -3.08 16 22 C -0.13 -2.52 8.08 31.12 0.25 -2.27 16 23 C -0.11 -1.95 7.54 31.12 0.23 -1.71 16 24 H 0.07 0.74 8.09 -2.38 -0.02 0.72 16 25 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.07 2.29 8.13 -2.39 -0.02 2.27 16 28 H 0.11 2.78 8.13 -2.39 -0.02 2.76 16 29 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 30 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 31 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 32 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 33 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 34 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 35 H 0.09 2.19 6.98 -2.39 -0.02 2.18 16 36 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 37 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 38 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.10 1.47 7.77 -2.38 -0.02 1.45 16 Total: -1.00 -71.41 341.56 5.23 -66.19 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: 1.00 Total: 10.11 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: 4.49 Total: -5.86 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: 0.28 Total: -55.12 kcal Atomic # 8 Polarization: -58.94 SS G_CDS: -2.57 Total: -61.51 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -71.41 5.23 -66.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850178275.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.894 kcal (2) G-P(sol) polarization free energy of solvation -71.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds