Wall clock time and date at job start Mon Mar 30 2020 05:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47020 * 2 1 4 4 C 1.50703 * 109.46825 * 240.00089 * 2 1 3 5 5 H 1.07994 * 120.00353 * 239.99795 * 4 2 1 6 6 C 1.37881 * 119.99805 * 60.00021 * 4 2 1 7 7 N 1.31517 * 120.00056 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99995 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46838 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47046 * 119.99915 * 8 6 4 11 11 H 1.48493 * 109.47275 * 240.00065 * 8 6 4 12 12 C 1.50696 * 109.46941 * 120.00256 * 2 1 3 13 13 O 1.20833 * 119.99595 * 120.00186 * 12 2 1 14 14 O 1.34224 * 120.00302 * 299.99657 * 12 2 1 15 15 C 1.45206 * 117.00077 * 180.02562 * 14 12 2 16 16 C 1.52999 * 109.46777 * 179.97438 * 15 14 12 17 17 O 1.42904 * 109.47221 * 65.00539 * 16 15 14 18 18 C 1.42898 * 113.99912 * 179.97438 * 17 16 15 19 19 C 1.53172 * 109.54437 * 269.55054 * 18 17 16 20 20 C 1.53093 * 109.16489 * 183.15527 * 19 18 17 21 21 O 1.42901 * 109.41414 * 57.60866 * 20 19 18 22 22 C 1.42900 * 114.09925 * 298.84133 * 21 20 19 23 23 C 1.53097 * 109.41475 * 61.15852 * 22 21 20 24 24 H 1.09008 * 109.46908 * 299.99556 * 1 2 3 25 25 H 1.09003 * 109.47422 * 59.99947 * 1 2 3 26 26 H 1.09003 * 109.47318 * 179.97438 * 1 2 3 27 27 H 0.97003 * 119.99960 * 179.97438 * 7 6 4 28 28 H 1.09000 * 109.47070 * 300.00162 * 15 14 12 29 29 H 1.09001 * 109.46626 * 60.00180 * 15 14 12 30 30 H 1.09000 * 109.46738 * 185.00050 * 16 15 14 31 31 H 1.08994 * 109.47465 * 305.00137 * 16 15 14 32 32 H 1.08999 * 109.54419 * 29.81790 * 18 17 16 33 33 H 1.08997 * 109.52204 * 303.06419 * 19 18 17 34 34 H 1.09008 * 109.52016 * 63.24763 * 19 18 17 35 35 H 1.08998 * 109.47861 * 297.62292 * 20 19 18 36 36 H 1.09000 * 109.48130 * 177.59280 * 20 19 18 37 37 H 1.08999 * 109.48094 * 301.17891 * 22 21 20 38 38 H 1.08998 * 109.49091 * 181.14899 * 22 21 20 39 39 H 1.09000 * 109.52325 * 182.48524 * 23 22 21 40 40 H 1.09002 * 109.51855 * 62.29261 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9426 0.8298 -2.6034 8 14 2.3223 -1.1194 -4.0081 9 1 3.1471 -2.2862 -3.6039 10 1 1.1675 -1.5864 -4.8165 11 1 3.1470 -0.1857 -4.8162 12 6 2.0323 -0.7104 1.2304 13 8 2.7270 -1.6929 1.1194 14 8 1.7081 -0.2519 2.4495 15 6 2.2277 -0.9859 3.5896 16 6 1.7567 -0.3187 4.8833 17 8 0.3349 -0.4230 4.9828 18 6 -0.2104 0.1716 6.1622 19 6 -0.2754 -0.8737 7.2800 20 6 -0.9328 -0.2499 8.5138 21 8 -2.2330 0.2311 8.1672 22 6 -2.2307 1.2449 7.1601 23 6 -1.6254 0.6812 5.8719 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 0.7086 1.1614 -3.4844 28 1 1.8643 -2.0130 3.5567 29 1 3.3172 -0.9848 3.5564 30 1 2.2180 -0.8153 5.7370 31 1 2.0442 0.7326 4.8756 32 1 0.4198 1.0039 6.4758 33 1 -0.8643 -1.7279 6.9460 34 1 0.7334 -1.2015 7.5312 35 1 -0.3219 0.5789 8.8713 36 1 -1.0205 -1.0017 9.2982 37 1 -1.6368 2.0934 7.4999 38 1 -3.2534 1.5703 6.9693 39 1 -1.5822 1.4655 5.1161 40 1 -2.2417 -0.1416 5.5096 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850984370.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:43 Heat of formation + Delta-G solvation = -194.788436 kcal Electronic energy + Delta-G solvation = -21182.405748 eV Core-core repulsion = 17769.080694 eV Total energy + Delta-G solvation = -3413.325054 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.87851 -39.46304 -37.63862 -35.65160 -33.84702 -32.84303 -31.42132 -30.72503 -29.59410 -25.17153 -24.67475 -23.96488 -23.47539 -22.03957 -20.59920 -19.78023 -17.36950 -16.77580 -16.38267 -16.23652 -16.10080 -15.85552 -15.28010 -15.15770 -14.94464 -14.43211 -14.00096 -13.63803 -13.36530 -12.92823 -12.69680 -12.54658 -12.07976 -11.71241 -11.63887 -11.51885 -11.39317 -11.03553 -10.97304 -10.72071 -10.66268 -10.61007 -10.30213 -10.03986 -10.01015 -9.95688 -9.63592 -9.06485 -8.99871 -8.43004 -6.08403 -4.13592 3.29815 3.34691 3.37141 3.40540 3.43110 3.56541 3.61286 4.43164 4.45617 4.52341 4.66797 4.80252 4.90382 5.01170 5.07602 5.13187 5.19134 5.24787 5.29732 5.34057 5.36775 5.56559 5.60410 5.73421 5.75257 5.90698 5.99449 6.22495 6.71735 6.86926 6.92950 6.94235 7.12119 7.26837 7.48200 7.77716 7.97744 8.17443 8.88865 8.97036 9.51803 10.99044 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.037131 B = 0.003303 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.910392 B = 8476.175642 C = 9021.073423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.057 3.943 3 H 0.063 0.937 4 C -0.511 4.511 5 H 0.076 0.924 6 C 0.061 3.939 7 N -0.892 5.892 8 Si 0.904 3.096 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.465 3.535 13 O -0.521 6.521 14 O -0.358 6.358 15 C 0.064 3.936 16 C 0.066 3.934 17 O -0.367 6.367 18 C 0.088 3.912 19 C -0.180 4.180 20 C 0.064 3.936 21 O -0.384 6.384 22 C 0.064 3.936 23 C -0.155 4.155 24 H 0.024 0.976 25 H 0.095 0.905 26 H 0.030 0.970 27 H 0.262 0.738 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.050 0.950 36 H 0.096 0.904 37 H 0.051 0.949 38 H 0.100 0.900 39 H 0.085 0.915 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.173 1.746 20.834 21.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.038 3.962 3 H 0.081 0.919 4 C -0.549 4.549 5 H 0.094 0.906 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.731 3.269 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.310 3.690 13 O -0.408 6.408 14 O -0.276 6.276 15 C -0.011 4.011 16 C -0.011 4.011 17 O -0.286 6.286 18 C 0.030 3.970 19 C -0.218 4.218 20 C -0.012 4.012 21 O -0.302 6.302 22 C -0.012 4.012 23 C -0.193 4.193 24 H 0.043 0.957 25 H 0.113 0.887 26 H 0.050 0.950 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.114 0.886 37 H 0.069 0.931 38 H 0.118 0.882 39 H 0.103 0.897 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.313 1.389 20.632 20.943 hybrid contribution 0.921 -0.384 -0.719 1.230 sum -2.393 1.005 19.913 20.081 Atomic orbital electron populations 1.21715 0.95528 1.00062 1.01689 1.18753 0.94934 0.96892 0.85590 0.91916 1.21190 1.31744 1.13184 0.88819 0.90614 1.24942 0.94935 0.95039 0.99128 1.69896 1.36615 1.22890 1.23699 0.86332 0.78651 0.79709 0.82182 1.19522 1.20888 1.20917 1.25350 0.76423 0.83214 0.84055 1.90492 1.36592 1.26835 1.86869 1.86669 1.70340 1.55410 1.15213 1.22829 0.98324 0.96307 0.83627 1.22609 0.82047 1.00576 0.95827 1.88074 1.20244 1.79036 1.41265 1.22069 0.95042 0.94247 0.85641 1.22760 1.02130 1.00530 0.96390 1.22541 0.84330 0.98237 0.96142 1.87938 1.28106 1.56624 1.57554 1.22603 1.02076 0.89777 0.86786 1.22303 0.95410 1.02764 0.98810 0.95669 0.88664 0.95036 0.92785 0.91057 0.90358 0.91791 0.92172 0.92116 0.89943 0.90779 0.93173 0.88621 0.93050 0.88188 0.89681 0.89903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 8.90 37.16 0.33 -2.90 16 2 C 0.06 1.49 2.74 -92.92 -0.25 1.24 16 3 H 0.06 1.67 8.14 -51.93 -0.42 1.25 16 4 C -0.51 -14.61 8.37 -34.44 -0.29 -14.90 16 5 H 0.08 2.26 6.76 -52.49 -0.35 1.90 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -25.12 11.32 55.43 0.63 -24.50 16 8 Si 0.90 21.69 29.54 -169.99 -5.02 16.66 16 9 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 C 0.46 11.25 7.25 36.00 0.26 11.51 16 13 O -0.52 -13.57 15.21 -18.76 -0.29 -13.86 16 14 O -0.36 -7.41 10.09 -42.00 -0.42 -7.83 16 15 C 0.06 1.03 5.85 37.16 0.22 1.24 16 16 C 0.07 0.82 6.14 37.16 0.23 1.05 16 17 O -0.37 -5.19 9.97 -38.79 -0.39 -5.58 16 18 C 0.09 0.94 2.70 -26.55 -0.07 0.87 16 19 C -0.18 -1.64 5.76 -26.59 -0.15 -1.79 16 20 C 0.06 0.51 6.84 37.21 0.25 0.77 16 21 O -0.38 -3.89 10.77 -35.23 -0.38 -4.27 16 22 C 0.06 0.55 6.84 37.21 0.25 0.80 16 23 C -0.16 -1.60 5.79 -26.59 -0.15 -1.75 16 24 H 0.02 0.55 8.11 -51.92 -0.42 0.12 16 25 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 26 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.07 1.19 8.13 -51.93 -0.42 0.76 16 29 H 0.08 1.16 8.13 -51.93 -0.42 0.74 16 30 H 0.06 0.60 7.99 -51.93 -0.42 0.19 16 31 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 32 H 0.06 0.57 7.79 -51.93 -0.40 0.16 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.58 7.99 -51.92 -0.42 0.16 16 35 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 331.36 15.07 4.99 4.99 Total: -1.00 -31.94 331.36 -6.88 -38.81 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -6.53 Total: -2.18 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: 0.53 Total: -2.26 kcal Atomic # 7 Polarization: -25.12 SS G_CDS: 0.63 Total: -24.50 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: -1.48 Total: -31.54 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.94 -6.88 -38.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850984370.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.974 kcal (2) G-P(sol) polarization free energy of solvation -31.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds