Wall clock time and date at job start Mon Mar 30 2020 05:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47020 * 2 1 4 4 C 1.50703 * 109.46825 * 240.00089 * 2 1 3 5 5 H 1.07994 * 120.00353 * 239.99795 * 4 2 1 6 6 C 1.37881 * 119.99805 * 60.00021 * 4 2 1 7 7 N 1.31517 * 120.00056 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99995 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46838 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47046 * 119.99915 * 8 6 4 11 11 H 1.48493 * 109.47275 * 240.00065 * 8 6 4 12 12 C 1.50696 * 109.46941 * 120.00256 * 2 1 3 13 13 O 1.20833 * 119.99595 * 120.00186 * 12 2 1 14 14 O 1.34224 * 120.00302 * 299.99657 * 12 2 1 15 15 C 1.45206 * 117.00077 * 180.02562 * 14 12 2 16 16 C 1.52999 * 109.46777 * 179.97438 * 15 14 12 17 17 O 1.42904 * 109.47221 * 65.00539 * 16 15 14 18 18 C 1.42898 * 113.99912 * 179.97438 * 17 16 15 19 19 C 1.53172 * 109.54437 * 269.55054 * 18 17 16 20 20 C 1.53093 * 109.16489 * 183.15527 * 19 18 17 21 21 O 1.42901 * 109.41414 * 57.60866 * 20 19 18 22 22 C 1.42900 * 114.09925 * 298.84133 * 21 20 19 23 23 C 1.53097 * 109.41475 * 61.15852 * 22 21 20 24 24 H 1.09008 * 109.46908 * 299.99556 * 1 2 3 25 25 H 1.09003 * 109.47422 * 59.99947 * 1 2 3 26 26 H 1.09003 * 109.47318 * 179.97438 * 1 2 3 27 27 H 0.97003 * 119.99960 * 179.97438 * 7 6 4 28 28 H 1.09000 * 109.47070 * 300.00162 * 15 14 12 29 29 H 1.09001 * 109.46626 * 60.00180 * 15 14 12 30 30 H 1.09000 * 109.46738 * 185.00050 * 16 15 14 31 31 H 1.08994 * 109.47465 * 305.00137 * 16 15 14 32 32 H 1.08999 * 109.54419 * 29.81790 * 18 17 16 33 33 H 1.08997 * 109.52204 * 303.06419 * 19 18 17 34 34 H 1.09008 * 109.52016 * 63.24763 * 19 18 17 35 35 H 1.08998 * 109.47861 * 297.62292 * 20 19 18 36 36 H 1.09000 * 109.48130 * 177.59280 * 20 19 18 37 37 H 1.08999 * 109.48094 * 301.17891 * 22 21 20 38 38 H 1.08998 * 109.49091 * 181.14899 * 22 21 20 39 39 H 1.09000 * 109.52325 * 182.48524 * 23 22 21 40 40 H 1.09002 * 109.51855 * 62.29261 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9426 0.8298 -2.6034 8 14 2.3223 -1.1194 -4.0081 9 1 3.1471 -2.2862 -3.6039 10 1 1.1675 -1.5864 -4.8165 11 1 3.1470 -0.1857 -4.8162 12 6 2.0323 -0.7104 1.2304 13 8 2.7270 -1.6929 1.1194 14 8 1.7081 -0.2519 2.4495 15 6 2.2277 -0.9859 3.5896 16 6 1.7567 -0.3187 4.8833 17 8 0.3349 -0.4230 4.9828 18 6 -0.2104 0.1716 6.1622 19 6 -0.2754 -0.8737 7.2800 20 6 -0.9328 -0.2499 8.5138 21 8 -2.2330 0.2311 8.1672 22 6 -2.2307 1.2449 7.1601 23 6 -1.6254 0.6812 5.8719 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 0.7086 1.1614 -3.4844 28 1 1.8643 -2.0130 3.5567 29 1 3.3172 -0.9848 3.5564 30 1 2.2180 -0.8153 5.7370 31 1 2.0442 0.7326 4.8756 32 1 0.4198 1.0039 6.4758 33 1 -0.8643 -1.7279 6.9460 34 1 0.7334 -1.2015 7.5312 35 1 -0.3219 0.5789 8.8713 36 1 -1.0205 -1.0017 9.2982 37 1 -1.6368 2.0934 7.4999 38 1 -3.2534 1.5703 6.9693 39 1 -1.5822 1.4655 5.1161 40 1 -2.2417 -0.1416 5.5096 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850984370.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:42 Heat of formation + Delta-G solvation = -214.685665 kcal Electronic energy + Delta-G solvation = -21183.268556 eV Core-core repulsion = 17769.080694 eV Total energy + Delta-G solvation = -3414.187862 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.34841 -40.55408 -38.61709 -37.33879 -35.92837 -33.73051 -32.70169 -32.09364 -30.85631 -27.29600 -25.63651 -25.11452 -24.56345 -23.40355 -21.63526 -21.34658 -18.70259 -18.24197 -18.05784 -17.61344 -17.27188 -17.01346 -16.75376 -16.16993 -16.10688 -15.76029 -15.17094 -14.82218 -14.62967 -14.37249 -14.14971 -13.61711 -13.51478 -13.26194 -12.99089 -12.85163 -12.63134 -12.57826 -12.40613 -12.30428 -12.22390 -12.06651 -11.87607 -11.57243 -11.32516 -11.11096 -11.04703 -10.66375 -10.55138 -10.46833 -8.20869 -6.34339 1.40197 1.42216 1.44338 1.55373 1.92204 2.43899 2.52573 2.96777 3.08989 3.70793 3.75714 3.94278 3.98945 4.04721 4.09638 4.13168 4.27145 4.27540 4.38530 4.52048 4.60768 4.65920 4.69481 4.70979 4.77131 4.84509 4.89615 4.99753 5.05335 5.13925 5.21347 5.37303 5.47489 5.68220 5.86948 6.09153 6.22878 6.24875 6.72439 7.04906 7.34611 8.85948 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.037131 B = 0.003303 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.910392 B = 8476.175642 C = 9021.073423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.050 3.950 3 H 0.052 0.948 4 C -0.540 4.540 5 H 0.056 0.944 6 C 0.022 3.978 7 N -0.909 5.909 8 Si 0.965 3.035 9 H -0.276 1.276 10 H -0.273 1.273 11 H -0.272 1.272 12 C 0.472 3.528 13 O -0.545 6.545 14 O -0.358 6.358 15 C 0.054 3.946 16 C 0.071 3.929 17 O -0.401 6.401 18 C 0.081 3.919 19 C -0.175 4.175 20 C 0.062 3.938 21 O -0.404 6.404 22 C 0.067 3.933 23 C -0.157 4.157 24 H 0.045 0.955 25 H 0.078 0.922 26 H 0.025 0.975 27 H 0.268 0.732 28 H 0.062 0.938 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.109 0.891 37 H 0.070 0.930 38 H 0.109 0.891 39 H 0.080 0.920 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.825 2.174 22.108 22.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.031 3.969 3 H 0.070 0.930 4 C -0.577 4.577 5 H 0.074 0.926 6 C -0.178 4.178 7 N -0.548 5.548 8 Si 0.790 3.210 9 H -0.201 1.201 10 H -0.198 1.198 11 H -0.197 1.197 12 C 0.317 3.683 13 O -0.435 6.435 14 O -0.275 6.275 15 C -0.020 4.020 16 C -0.005 4.005 17 O -0.321 6.321 18 C 0.024 3.976 19 C -0.213 4.213 20 C -0.014 4.014 21 O -0.324 6.324 22 C -0.010 4.010 23 C -0.195 4.195 24 H 0.064 0.936 25 H 0.097 0.903 26 H 0.044 0.956 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.110 0.890 30 H 0.121 0.879 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.109 0.891 35 H 0.087 0.913 36 H 0.127 0.873 37 H 0.088 0.912 38 H 0.127 0.873 39 H 0.099 0.901 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.981 1.840 21.935 22.213 hybrid contribution 0.798 -0.496 -1.021 1.388 sum -2.183 1.343 20.914 21.070 Atomic orbital electron populations 1.21534 0.94540 0.99676 1.01832 1.18674 0.95766 0.96206 0.86302 0.93046 1.21293 1.32620 1.13275 0.90543 0.92599 1.25663 0.94862 0.95663 1.01617 1.69970 1.36646 1.23438 1.24724 0.85396 0.78373 0.78521 0.78717 1.20111 1.19805 1.19701 1.24835 0.75901 0.82549 0.84968 1.90469 1.37707 1.27833 1.87529 1.86612 1.70102 1.55650 1.15152 1.23291 0.99349 0.96037 0.83303 1.22680 0.81807 1.01343 0.94672 1.88030 1.21071 1.79764 1.43194 1.22294 0.95092 0.95202 0.85005 1.22719 1.02890 0.99426 0.96288 1.22703 0.83686 0.99225 0.95812 1.87914 1.29534 1.57141 1.57763 1.22666 1.02904 0.89818 0.85574 1.22323 0.95381 1.01951 0.99798 0.93565 0.90309 0.95567 0.92221 0.91922 0.88962 0.87941 0.91017 0.90190 0.91940 0.89109 0.91286 0.87275 0.91217 0.87282 0.90099 0.92025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.82 8.90 71.98 0.64 -5.18 16 2 C 0.05 2.62 2.74 -12.29 -0.03 2.59 16 3 H 0.05 2.81 8.14 -2.39 -0.02 2.79 16 4 C -0.54 -31.36 8.37 25.60 0.21 -31.15 16 5 H 0.06 3.41 6.76 -2.91 -0.02 3.39 16 6 C 0.02 1.22 5.30 84.65 0.45 1.67 16 7 N -0.91 -51.14 11.32 21.45 0.24 -50.90 16 8 Si 0.97 44.38 29.54 68.60 2.03 46.41 16 9 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 11 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 12 C 0.47 23.08 7.25 71.23 0.52 23.59 16 13 O -0.55 -28.86 15.21 21.94 0.33 -28.53 16 14 O -0.36 -14.65 10.09 -48.71 -0.49 -15.14 16 15 C 0.05 1.67 5.85 71.98 0.42 2.09 16 16 C 0.07 1.60 6.14 71.98 0.44 2.04 16 17 O -0.40 -10.79 9.97 -145.57 -1.45 -12.24 16 18 C 0.08 1.59 2.70 30.71 0.08 1.68 16 19 C -0.18 -2.84 5.76 30.68 0.18 -2.66 16 20 C 0.06 0.84 6.84 72.01 0.49 1.33 16 21 O -0.40 -7.53 10.77 -148.98 -1.60 -9.13 16 22 C 0.07 1.03 6.84 72.01 0.49 1.53 16 23 C -0.16 -3.11 5.79 30.69 0.18 -2.94 16 24 H 0.05 2.02 8.11 -2.38 -0.02 2.00 16 25 H 0.08 4.15 6.07 -2.39 -0.01 4.13 16 26 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 28 H 0.06 2.05 8.13 -2.39 -0.02 2.03 16 29 H 0.09 2.60 8.13 -2.39 -0.02 2.58 16 30 H 0.10 1.55 7.99 -2.39 -0.02 1.53 16 31 H 0.07 1.46 8.09 -2.39 -0.02 1.44 16 32 H 0.08 1.25 7.79 -2.39 -0.02 1.23 16 33 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.09 1.14 7.99 -2.38 -0.02 1.13 16 35 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -68.64 331.36 4.14 -64.51 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: 1.01 Total: 10.44 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: 4.07 Total: -5.41 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: 0.24 Total: -50.90 kcal Atomic # 8 Polarization: -61.83 SS G_CDS: -3.21 Total: -65.04 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -68.64 4.14 -64.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850984370.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.178 kcal (2) G-P(sol) polarization free energy of solvation -68.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds