Wall clock time and date at job start Mon Mar 30 2020 05:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35322 * 125.86299 * 2 1 4 4 C 1.35351 * 106.16806 * 180.26356 * 3 2 1 5 5 C 1.50701 * 126.74701 * 180.02562 * 4 3 2 6 6 N 1.46505 * 109.47017 * 94.95149 * 5 4 3 7 7 C 1.39670 * 119.99897 * 180.02562 * 6 5 4 8 8 C 1.38914 * 120.07757 * 359.71630 * 7 6 5 9 9 C 1.38107 * 119.92591 * 179.76827 * 8 7 6 10 10 C 1.38282 * 120.07141 * 0.51802 * 9 8 7 11 11 C 1.50707 * 119.92287 * 179.76500 * 10 9 8 12 12 C 1.50700 * 109.46904 * 269.97288 * 11 10 9 13 13 H 1.08003 * 119.99827 * 0.02562 * 12 11 10 14 14 C 1.37871 * 119.99981 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00265 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00180 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47141 * 59.99971 * 16 14 12 18 18 H 1.48502 * 109.47291 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47167 * 300.00106 * 16 14 12 20 20 C 1.38288 * 120.15344 * 359.73657 * 10 9 8 21 21 C 1.38105 * 120.07145 * 0.02562 * 20 10 9 22 22 N 1.33769 * 106.50107 * 0.02562 * 4 3 2 23 23 N 1.28629 * 108.88659 * 359.97438 * 22 4 3 24 24 H 1.08997 * 109.47250 * 269.71379 * 1 2 3 25 25 H 1.09003 * 109.47080 * 29.71873 * 1 2 3 26 26 H 1.09006 * 109.46804 * 149.71734 * 1 2 3 27 27 H 1.07991 * 126.91601 * 0.22443 * 3 2 1 28 28 H 1.08999 * 109.47374 * 214.95257 * 5 4 3 29 29 H 1.09001 * 109.47123 * 334.95434 * 5 4 3 30 30 H 0.96995 * 119.99642 * 359.97438 * 6 5 4 31 31 H 1.07995 * 120.03637 * 0.02562 * 8 7 6 32 32 H 1.07997 * 119.95934 * 180.25292 * 9 8 7 33 33 H 1.08994 * 109.47262 * 29.97102 * 11 10 9 34 34 H 1.09004 * 109.47223 * 149.97548 * 11 10 9 35 35 H 0.96994 * 120.00418 * 180.02562 * 15 14 12 36 36 H 1.07998 * 119.96239 * 180.02562 * 20 10 9 37 37 H 1.08001 * 120.03179 * 179.97438 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2578 1.0967 0.0000 4 6 3.5321 0.6405 -0.0060 5 6 4.7880 1.4736 -0.0079 6 7 5.2657 1.6399 1.3671 7 6 6.4228 2.3803 1.6195 8 6 7.1251 2.9547 0.5677 9 6 8.2662 3.6902 0.8213 10 6 8.7158 3.8461 2.1197 11 6 9.9643 4.6449 2.3922 12 6 11.1628 3.7321 2.3543 13 1 11.0334 2.6790 2.1526 14 6 12.4246 4.2416 2.5760 15 7 12.5823 5.5241 2.8211 16 14 13.9104 3.1104 2.5284 17 1 14.0090 2.4789 1.1879 18 1 15.1407 3.8974 2.7970 19 1 13.7626 2.0553 3.5629 20 6 8.0220 3.2712 3.1687 21 6 6.8774 2.5386 2.9226 22 7 3.4576 -0.6951 -0.0099 23 7 2.2193 -1.0430 -0.0060 24 1 -0.3633 -0.0051 1.0276 25 1 -0.3633 0.8925 -0.5095 26 1 -0.3633 -0.8875 -0.5183 27 1 1.9381 2.1282 0.0034 28 1 5.5542 0.9744 -0.6009 29 1 4.5745 2.4516 -0.4391 30 1 4.7780 1.2364 2.1020 31 1 6.7769 2.8298 -0.4470 32 1 8.8104 4.1404 0.0043 33 1 10.0732 5.4192 1.6328 34 1 9.8916 5.1084 3.3761 35 1 13.4700 5.8826 2.9767 36 1 8.3756 3.3952 4.1816 37 1 6.3363 2.0895 3.7423 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902224954.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:04 Heat of formation + Delta-G solvation = 122.716610 kcal Electronic energy + Delta-G solvation = -19053.134053 eV Core-core repulsion = 16025.471473 eV Total energy + Delta-G solvation = -3027.662580 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.61164 -38.83394 -36.06660 -34.81030 -33.08562 -31.87935 -30.20496 -29.92004 -28.47896 -27.02195 -25.34842 -22.71713 -22.51273 -22.26172 -21.10918 -19.92637 -17.74580 -17.11885 -16.70642 -16.18475 -15.64654 -15.25777 -14.75662 -14.32928 -14.05000 -13.88370 -13.74199 -13.44471 -13.23312 -12.71384 -12.56432 -12.42578 -11.92319 -11.80558 -11.25052 -11.14661 -11.10348 -10.60326 -10.51270 -10.44930 -10.05255 -9.74156 -9.65130 -9.34852 -8.97256 -8.32361 -8.16965 -6.71548 -5.92711 -3.97015 1.18621 1.94346 2.09540 2.18908 2.42804 3.38981 3.42307 3.46537 3.78617 3.95084 4.14078 4.42622 4.48311 4.49011 4.69501 4.72139 4.76156 5.12196 5.37319 5.39899 5.59109 5.62730 5.70026 5.79031 6.10658 6.13610 6.19427 6.38877 6.49400 6.77895 6.91253 7.36389 7.36806 7.48355 7.66489 7.88751 8.02816 8.03859 8.10035 8.15461 8.46516 9.08796 9.66293 11.15591 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.046413 B = 0.002782 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.137860 B =10062.140782 C =10277.327095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.297 5.297 3 C -0.032 4.032 4 C -0.033 4.033 5 C 0.219 3.781 6 N -0.753 5.753 7 C 0.183 3.817 8 C -0.195 4.195 9 C -0.080 4.080 10 C -0.084 4.084 11 C 0.053 3.947 12 C -0.508 4.508 13 H 0.056 0.944 14 C 0.056 3.944 15 N -0.897 5.897 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.080 4.080 21 C -0.192 4.192 22 N -0.252 5.252 23 N -0.087 5.087 24 H 0.092 0.908 25 H 0.100 0.900 26 H 0.102 0.898 27 H 0.194 0.806 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.394 0.606 31 H 0.110 0.890 32 H 0.116 0.884 33 H 0.025 0.975 34 H 0.025 0.975 35 H 0.261 0.739 36 H 0.116 0.884 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.984 -6.603 -5.885 27.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.090 5.090 3 C -0.184 4.184 4 C -0.171 4.171 5 C 0.093 3.907 6 N -0.386 5.386 7 C 0.084 3.916 8 C -0.217 4.217 9 C -0.099 4.099 10 C -0.086 4.086 11 C 0.016 3.984 12 C -0.546 4.546 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.536 5.536 16 Si 0.721 3.279 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.098 4.098 21 C -0.214 4.214 22 N -0.119 5.119 23 N -0.067 5.067 24 H 0.110 0.890 25 H 0.118 0.882 26 H 0.120 0.880 27 H 0.211 0.789 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.227 0.773 31 H 0.128 0.872 32 H 0.134 0.866 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.071 0.929 36 H 0.134 0.866 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -25.875 -8.014 -6.064 27.758 hybrid contribution 0.384 0.372 0.270 0.599 sum -25.490 -7.642 -5.794 27.235 Atomic orbital electron populations 1.22293 0.72590 1.06005 1.05151 1.47305 1.09517 1.04964 1.47213 1.23500 0.90851 0.94858 1.09171 1.22056 0.95295 0.91534 1.08206 1.19258 0.89495 0.96254 0.85732 1.44315 1.28220 1.60008 1.06105 1.17562 0.87152 0.93252 0.93657 1.20509 0.99005 1.05311 0.96865 1.20843 0.94650 0.97504 0.96908 1.20461 0.97272 0.98684 0.92157 1.18242 0.88364 0.94232 0.97519 1.21109 0.90774 0.94762 1.47958 0.92584 1.25015 0.98970 0.95057 0.95422 1.69949 1.22858 1.12032 1.48805 0.86634 0.81930 0.80681 0.78647 1.20213 1.21350 1.20236 1.20824 0.93599 0.96220 0.99198 1.20449 1.00242 1.06572 0.94115 1.75137 1.09287 1.12048 1.15431 1.78363 0.96431 1.12077 1.19794 0.88953 0.88170 0.87966 0.78934 0.90745 0.90844 0.77261 0.87240 0.86603 0.95693 0.95720 0.92945 0.86609 0.87493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.19 11.39 59.85 0.68 0.87 16 2 N -0.30 -2.32 3.74 -68.05 -0.25 -2.57 16 3 C -0.03 -0.24 11.55 -17.04 -0.20 -0.44 16 4 C -0.03 -0.35 6.61 -82.78 -0.55 -0.90 16 5 C 0.22 2.44 5.47 -5.19 -0.03 2.41 16 6 N -0.75 -9.87 5.73 -59.80 -0.34 -10.21 16 7 C 0.18 2.99 6.65 -83.79 -0.56 2.43 16 8 C -0.19 -3.33 9.31 -39.38 -0.37 -3.69 16 9 C -0.08 -1.61 9.69 -39.61 -0.38 -1.99 16 10 C -0.08 -1.88 5.07 -104.58 -0.53 -2.41 16 11 C 0.05 1.41 5.10 -29.03 -0.15 1.26 16 12 C -0.51 -14.60 9.09 -34.44 -0.31 -14.92 16 13 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 16 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 C -0.08 -1.61 9.69 -39.61 -0.38 -1.99 16 21 C -0.19 -3.33 9.90 -39.38 -0.39 -3.72 16 22 N -0.25 -3.40 12.41 33.29 0.41 -2.99 16 23 N -0.09 -1.03 13.16 60.35 0.79 -0.23 16 24 H 0.09 0.11 8.14 -51.93 -0.42 -0.32 16 25 H 0.10 -0.02 8.14 -51.93 -0.42 -0.45 16 26 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 27 H 0.19 0.76 8.06 -52.49 -0.42 0.34 16 28 H 0.07 0.90 7.94 -51.93 -0.41 0.49 16 29 H 0.07 0.69 7.96 -51.93 -0.41 0.27 16 30 H 0.39 4.87 8.48 -40.82 -0.35 4.52 16 31 H 0.11 1.58 6.73 -52.49 -0.35 1.23 16 32 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 33 H 0.02 0.69 8.08 -51.93 -0.42 0.27 16 34 H 0.02 0.68 8.08 -51.93 -0.42 0.26 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 37 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 324.15 15.07 4.88 4.88 Total: -1.00 -34.76 324.15 -6.92 -41.68 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -4.87 Total: 0.24 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: -3.26 Total: -21.57 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: 1.35 Total: -42.30 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.76 -6.92 -41.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902224954.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.395 kcal (2) G-P(sol) polarization free energy of solvation -34.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds