Wall clock time and date at job start Mon Mar 30 2020 05:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35322 * 125.86299 * 2 1 4 4 C 1.35351 * 106.16806 * 180.26356 * 3 2 1 5 5 C 1.50701 * 126.74701 * 180.02562 * 4 3 2 6 6 N 1.46505 * 109.47017 * 94.95149 * 5 4 3 7 7 C 1.39670 * 119.99897 * 180.02562 * 6 5 4 8 8 C 1.38914 * 120.07757 * 359.71630 * 7 6 5 9 9 C 1.38107 * 119.92591 * 179.76827 * 8 7 6 10 10 C 1.38282 * 120.07141 * 0.51802 * 9 8 7 11 11 C 1.50707 * 119.92287 * 179.76500 * 10 9 8 12 12 C 1.50700 * 109.46904 * 269.97288 * 11 10 9 13 13 H 1.08003 * 119.99827 * 0.02562 * 12 11 10 14 14 C 1.37871 * 119.99981 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00265 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00180 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47141 * 59.99971 * 16 14 12 18 18 H 1.48502 * 109.47291 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47167 * 300.00106 * 16 14 12 20 20 C 1.38288 * 120.15344 * 359.73657 * 10 9 8 21 21 C 1.38105 * 120.07145 * 0.02562 * 20 10 9 22 22 N 1.33769 * 106.50107 * 0.02562 * 4 3 2 23 23 N 1.28629 * 108.88659 * 359.97438 * 22 4 3 24 24 H 1.08997 * 109.47250 * 269.71379 * 1 2 3 25 25 H 1.09003 * 109.47080 * 29.71873 * 1 2 3 26 26 H 1.09006 * 109.46804 * 149.71734 * 1 2 3 27 27 H 1.07991 * 126.91601 * 0.22443 * 3 2 1 28 28 H 1.08999 * 109.47374 * 214.95257 * 5 4 3 29 29 H 1.09001 * 109.47123 * 334.95434 * 5 4 3 30 30 H 0.96995 * 119.99642 * 359.97438 * 6 5 4 31 31 H 1.07995 * 120.03637 * 0.02562 * 8 7 6 32 32 H 1.07997 * 119.95934 * 180.25292 * 9 8 7 33 33 H 1.08994 * 109.47262 * 29.97102 * 11 10 9 34 34 H 1.09004 * 109.47223 * 149.97548 * 11 10 9 35 35 H 0.96994 * 120.00418 * 180.02562 * 15 14 12 36 36 H 1.07998 * 119.96239 * 180.02562 * 20 10 9 37 37 H 1.08001 * 120.03179 * 179.97438 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2578 1.0967 0.0000 4 6 3.5321 0.6405 -0.0060 5 6 4.7880 1.4736 -0.0079 6 7 5.2657 1.6399 1.3671 7 6 6.4228 2.3803 1.6195 8 6 7.1251 2.9547 0.5677 9 6 8.2662 3.6902 0.8213 10 6 8.7158 3.8461 2.1197 11 6 9.9643 4.6449 2.3922 12 6 11.1628 3.7321 2.3543 13 1 11.0334 2.6790 2.1526 14 6 12.4246 4.2416 2.5760 15 7 12.5823 5.5241 2.8211 16 14 13.9104 3.1104 2.5284 17 1 14.0090 2.4789 1.1879 18 1 15.1407 3.8974 2.7970 19 1 13.7626 2.0553 3.5629 20 6 8.0220 3.2712 3.1687 21 6 6.8774 2.5386 2.9226 22 7 3.4576 -0.6951 -0.0099 23 7 2.2193 -1.0430 -0.0060 24 1 -0.3633 -0.0051 1.0276 25 1 -0.3633 0.8925 -0.5095 26 1 -0.3633 -0.8875 -0.5183 27 1 1.9381 2.1282 0.0034 28 1 5.5542 0.9744 -0.6009 29 1 4.5745 2.4516 -0.4391 30 1 4.7780 1.2364 2.1020 31 1 6.7769 2.8298 -0.4470 32 1 8.8104 4.1404 0.0043 33 1 10.0732 5.4192 1.6328 34 1 9.8916 5.1084 3.3761 35 1 13.4700 5.8826 2.9767 36 1 8.3756 3.3952 4.1816 37 1 6.3363 2.0895 3.7423 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902224954.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:04 Heat of formation + Delta-G solvation = 99.275803 kcal Electronic energy + Delta-G solvation = -19054.150523 eV Core-core repulsion = 16025.471473 eV Total energy + Delta-G solvation = -3028.679050 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.28492 -40.24480 -37.21161 -35.62698 -34.95340 -33.05856 -31.62167 -31.41903 -29.00991 -28.35412 -26.75922 -24.58171 -23.59557 -23.02036 -22.11409 -21.42675 -18.53951 -18.42338 -17.94508 -17.50134 -16.84865 -16.54732 -15.94250 -15.72729 -15.20407 -14.84804 -14.74769 -14.38169 -14.20712 -14.07521 -13.95504 -13.53050 -13.35330 -13.15643 -13.02525 -12.60860 -12.50836 -12.39305 -11.90390 -11.60628 -11.57759 -11.33794 -11.07185 -10.55990 -10.55553 -10.34879 -9.63764 -8.28236 -7.93434 -6.27587 0.58664 0.71840 0.92647 1.28291 1.40892 1.43839 1.52087 1.54153 2.43213 2.77288 3.14715 3.19739 3.28660 3.72993 3.97260 4.14685 4.16664 4.28601 4.34458 4.48791 4.55117 4.65138 4.66011 4.77329 4.82359 4.96190 5.04360 5.07815 5.24258 5.40519 5.43165 5.59459 5.64006 5.73522 5.84281 6.06278 6.27398 6.28068 6.58983 6.85686 6.91120 7.40433 7.44223 8.93880 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.046413 B = 0.002782 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.137860 B =10062.140782 C =10277.327095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.288 5.288 3 C -0.009 4.009 4 C -0.056 4.056 5 C 0.219 3.781 6 N -0.740 5.740 7 C 0.201 3.799 8 C -0.190 4.190 9 C -0.088 4.088 10 C -0.123 4.123 11 C 0.063 3.937 12 C -0.526 4.526 13 H 0.051 0.949 14 C 0.002 3.998 15 N -0.932 5.932 16 Si 0.963 3.037 17 H -0.268 1.268 18 H -0.280 1.280 19 H -0.269 1.269 20 C -0.090 4.090 21 C -0.191 4.191 22 N -0.298 5.298 23 N -0.122 5.122 24 H 0.107 0.893 25 H 0.133 0.867 26 H 0.106 0.894 27 H 0.236 0.764 28 H 0.063 0.937 29 H 0.100 0.900 30 H 0.400 0.600 31 H 0.141 0.859 32 H 0.112 0.888 33 H -0.001 1.001 34 H -0.003 1.003 35 H 0.264 0.736 36 H 0.109 0.891 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.465 -7.559 -6.652 30.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.081 5.081 3 C -0.162 4.162 4 C -0.195 4.195 5 C 0.093 3.907 6 N -0.372 5.372 7 C 0.099 3.901 8 C -0.213 4.213 9 C -0.107 4.107 10 C -0.125 4.125 11 C 0.027 3.973 12 C -0.564 4.564 13 H 0.069 0.931 14 C -0.196 4.196 15 N -0.572 5.572 16 Si 0.787 3.213 17 H -0.193 1.193 18 H -0.205 1.205 19 H -0.194 1.194 20 C -0.108 4.108 21 C -0.213 4.213 22 N -0.165 5.165 23 N -0.101 5.101 24 H 0.126 0.874 25 H 0.152 0.848 26 H 0.124 0.876 27 H 0.252 0.748 28 H 0.081 0.919 29 H 0.118 0.882 30 H 0.235 0.765 31 H 0.158 0.842 32 H 0.130 0.870 33 H 0.018 0.982 34 H 0.016 0.984 35 H 0.073 0.927 36 H 0.127 0.873 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -28.420 -9.016 -6.840 30.591 hybrid contribution 0.918 0.658 0.475 1.225 sum -27.503 -8.358 -6.366 29.441 Atomic orbital electron populations 1.22785 0.69568 1.07960 1.06765 1.47738 1.11163 1.04208 1.44967 1.24074 0.89633 0.96335 1.06147 1.22098 0.96382 0.90901 1.10116 1.19368 0.89586 0.97581 0.84139 1.44396 1.26803 1.58470 1.07574 1.17617 0.87474 0.92017 0.93019 1.20699 0.97750 1.04143 0.98659 1.20850 0.95870 0.98272 0.95723 1.20145 0.97047 1.01157 0.94137 1.17979 0.90475 0.93844 0.95049 1.21431 0.92109 0.94844 1.47987 0.93053 1.25930 1.02166 0.96651 0.94831 1.70075 1.23754 1.13849 1.49524 0.85534 0.78024 0.78666 0.79033 1.19329 1.20468 1.19448 1.20806 0.94719 0.96960 0.98359 1.20626 0.99271 1.05803 0.95629 1.75066 1.10557 1.13816 1.17059 1.78277 0.96457 1.13714 1.21661 0.87419 0.84823 0.87568 0.74768 0.91906 0.88172 0.76542 0.84157 0.87023 0.98247 0.98418 0.92672 0.87284 0.84835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.08 11.39 127.77 1.46 1.53 16 2 N -0.29 -3.63 3.74 -369.22 -1.38 -5.01 16 3 C -0.01 -0.10 11.55 83.49 0.96 0.86 16 4 C -0.06 -1.06 6.61 41.60 0.28 -0.79 16 5 C 0.22 4.19 5.47 85.63 0.47 4.66 16 6 N -0.74 -17.13 5.73 -343.12 -1.96 -19.09 16 7 C 0.20 6.07 6.65 38.22 0.25 6.33 16 8 C -0.19 -6.14 9.31 22.40 0.21 -5.93 16 9 C -0.09 -3.57 9.69 22.25 0.22 -3.35 16 10 C -0.12 -5.70 5.07 -19.84 -0.10 -5.80 16 11 C 0.06 3.56 5.10 29.10 0.15 3.71 16 12 C -0.53 -31.34 9.09 25.60 0.23 -31.10 16 13 H 0.05 3.03 7.74 -2.91 -0.02 3.01 16 14 C 0.00 0.11 5.46 84.65 0.46 0.57 16 15 N -0.93 -57.82 13.29 21.45 0.28 -57.53 16 16 Si 0.96 45.88 29.54 68.60 2.03 47.91 16 17 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 18 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 19 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 20 C -0.09 -3.68 9.69 22.25 0.22 -3.46 16 21 C -0.19 -6.34 9.90 22.40 0.22 -6.12 16 22 N -0.30 -7.74 12.41 -48.60 -0.60 -8.34 16 23 N -0.12 -2.72 13.16 37.02 0.49 -2.23 16 24 H 0.11 -0.14 8.14 -2.39 -0.02 -0.16 16 25 H 0.13 -0.71 8.14 -2.39 -0.02 -0.73 16 26 H 0.11 0.08 8.14 -2.38 -0.02 0.06 16 27 H 0.24 0.47 8.06 -2.92 -0.02 0.44 16 28 H 0.06 1.38 7.94 -2.39 -0.02 1.36 16 29 H 0.10 1.43 7.96 -2.39 -0.02 1.41 16 30 H 0.40 8.63 8.48 -92.71 -0.79 7.84 16 31 H 0.14 3.61 6.73 -2.91 -0.02 3.59 16 32 H 0.11 4.46 8.06 -2.91 -0.02 4.44 16 33 H 0.00 -0.05 8.08 -2.39 -0.02 -0.07 16 34 H 0.00 -0.15 8.08 -2.38 -0.02 -0.17 16 35 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 36 H 0.11 4.47 8.06 -2.91 -0.02 4.45 16 37 H 0.13 3.67 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -79.13 324.15 4.17 -74.96 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: 0.29 Total: 8.23 kcal Atomic # 6 Polarization: -43.91 SS G_CDS: 5.02 Total: -38.89 kcal Atomic # 7 Polarization: -89.03 SS G_CDS: -3.18 Total: -92.21 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -79.13 4.17 -74.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902224954.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.240 kcal (2) G-P(sol) polarization free energy of solvation -79.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds