Wall clock time and date at job start Mon Mar 30 2020 05:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 N 1.28593 * 124.62012 * 2 1 4 4 C 1.31382 * 108.71834 * 180.02562 * 3 2 1 5 5 C 1.39675 * 105.89780 * 359.97438 * 4 3 2 6 6 C 1.50698 * 127.04529 * 180.02562 * 5 4 3 7 7 N 1.46506 * 109.46879 * 95.00342 * 6 5 4 8 8 C 1.39672 * 119.99822 * 179.97438 * 7 6 5 9 9 C 1.38910 * 120.07545 * 359.72121 * 8 7 6 10 10 C 1.38112 * 119.92589 * 179.76827 * 9 8 7 11 11 C 1.38279 * 120.06995 * 0.50930 * 10 9 8 12 12 C 1.50706 * 119.92282 * 179.76792 * 11 10 9 13 13 C 1.50703 * 109.46845 * 269.97623 * 12 11 10 14 14 H 1.07998 * 120.00034 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00028 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99924 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00183 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46973 * 89.99929 * 17 15 13 19 19 H 1.48495 * 109.47074 * 209.99951 * 17 15 13 20 20 H 1.48500 * 109.46875 * 330.00034 * 17 15 13 21 21 C 1.38285 * 120.15393 * 359.74763 * 11 10 9 22 22 C 1.38100 * 120.07482 * 359.97438 * 21 11 10 23 23 N 1.28602 * 124.61432 * 180.02562 * 2 1 3 24 24 H 1.08994 * 109.47481 * 269.96375 * 1 2 3 25 25 H 1.09006 * 109.46445 * 29.96624 * 1 2 3 26 26 H 1.08996 * 109.46651 * 149.96025 * 1 2 3 27 27 H 1.08005 * 127.04646 * 180.26045 * 4 3 2 28 28 H 1.09000 * 109.46996 * 214.99904 * 6 5 4 29 29 H 1.09000 * 109.47768 * 335.00281 * 6 5 4 30 30 H 0.96995 * 119.99888 * 359.97438 * 7 6 5 31 31 H 1.07998 * 120.04124 * 0.02562 * 9 8 7 32 32 H 1.08000 * 119.96173 * 180.25124 * 10 9 8 33 33 H 1.08993 * 109.47279 * 29.97539 * 12 11 10 34 34 H 1.09000 * 109.47262 * 149.98507 * 12 11 10 35 35 H 0.96995 * 120.00295 * 180.02562 * 16 15 13 36 36 H 1.08003 * 119.96407 * 180.02562 * 21 11 10 37 37 H 1.07999 * 120.04370 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.1957 1.0582 0.0000 4 6 3.4592 0.6983 -0.0006 5 6 3.4591 -0.6985 -0.0003 6 6 4.6619 -1.6064 -0.0002 7 7 4.9791 -1.9965 1.3759 8 6 6.0613 -2.8421 1.6302 9 6 6.8344 -3.3186 0.5791 10 6 7.9068 -4.1507 0.8345 11 6 8.2048 -4.5178 2.1339 12 6 9.3725 -5.4301 2.4084 13 6 8.9083 -6.8635 2.3770 14 1 7.8715 -7.0911 2.1778 15 6 9.8074 -7.8844 2.6015 16 7 11.0700 -7.6073 2.8436 17 14 9.2321 -9.6612 2.5619 18 1 9.3555 -10.1907 1.1800 19 1 10.0704 -10.4735 3.4799 20 1 7.8132 -9.7318 2.9942 21 6 7.4340 -4.0495 3.1822 22 6 6.3638 -3.2126 2.9344 23 7 2.1956 -1.0584 -0.0005 24 1 -0.3634 -0.0007 1.0276 25 1 -0.3632 0.8904 -0.5134 26 1 -0.3632 -0.8896 -0.5144 27 1 4.3212 1.3490 0.0032 28 1 4.4446 -2.4973 -0.5895 29 1 5.5131 -1.0822 -0.4346 30 1 4.4375 -1.6677 2.1103 31 1 6.5998 -3.0355 -0.4364 32 1 8.5107 -4.5182 0.0181 33 1 10.1380 -5.2794 1.6473 34 1 9.7872 -5.2040 3.3907 35 1 11.7026 -8.3255 3.0012 36 1 7.6697 -4.3379 4.1960 37 1 5.7619 -2.8475 3.7534 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902226932.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:55 Heat of formation + Delta-G solvation = 132.758281 kcal Electronic energy + Delta-G solvation = -19079.875294 eV Core-core repulsion = 16052.648154 eV Total energy + Delta-G solvation = -3027.227140 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.88167 -38.84899 -36.02221 -34.04853 -33.05844 -32.60923 -30.59508 -30.10301 -28.62764 -26.58642 -25.26081 -22.78546 -22.72486 -22.08019 -20.92249 -19.93215 -17.68443 -17.26003 -16.80723 -16.20218 -15.69096 -15.07148 -14.76928 -14.34671 -14.11594 -13.81536 -13.64948 -13.33204 -13.19233 -12.74922 -12.59559 -12.41445 -12.01683 -11.53124 -11.20384 -11.16154 -11.11464 -10.65761 -10.58095 -10.48435 -10.06324 -9.74610 -9.59525 -9.35877 -8.98013 -8.33831 -8.18053 -6.73150 -5.93928 -3.98195 1.44878 1.96771 2.01427 2.17851 2.41583 3.35692 3.41642 3.46460 3.68330 3.86732 4.41867 4.47720 4.56830 4.64833 4.73805 4.82972 4.88297 5.29337 5.38659 5.44412 5.58740 5.62307 5.81624 5.85219 6.09442 6.18007 6.32480 6.37770 6.48058 6.76784 6.89870 7.35332 7.35918 7.46778 7.65723 7.86953 7.98385 8.01715 8.03014 8.08225 8.45341 9.07838 9.65109 11.14432 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.039376 B = 0.002849 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.917216 B = 9824.287220 C =10129.873370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.159 5.159 3 N -0.293 5.293 4 C -0.010 4.010 5 C -0.011 4.011 6 C 0.223 3.777 7 N -0.753 5.753 8 C 0.183 3.817 9 C -0.194 4.194 10 C -0.080 4.080 11 C -0.084 4.084 12 C 0.053 3.947 13 C -0.507 4.507 14 H 0.056 0.944 15 C 0.056 3.944 16 N -0.896 5.896 17 Si 0.893 3.107 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.080 4.080 22 C -0.191 4.191 23 N -0.271 5.271 24 H 0.090 0.910 25 H 0.102 0.898 26 H 0.103 0.897 27 H 0.200 0.800 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.394 0.606 31 H 0.110 0.890 32 H 0.116 0.884 33 H 0.025 0.975 34 H 0.025 0.975 35 H 0.260 0.740 36 H 0.116 0.884 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.320 16.932 -5.953 25.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.060 5.060 3 N -0.134 5.134 4 C -0.192 4.192 5 C -0.174 4.174 6 C 0.096 3.904 7 N -0.387 5.387 8 C 0.084 3.916 9 C -0.217 4.217 10 C -0.099 4.099 11 C -0.085 4.085 12 C 0.016 3.984 13 C -0.546 4.546 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.721 3.279 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.098 4.098 22 C -0.213 4.213 23 N -0.114 5.114 24 H 0.108 0.892 25 H 0.121 0.879 26 H 0.122 0.878 27 H 0.217 0.783 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.227 0.773 31 H 0.128 0.872 32 H 0.134 0.866 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.070 0.930 36 H 0.134 0.866 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -19.581 16.882 -6.126 26.570 hybrid contribution 0.314 -0.869 0.272 0.963 sum -19.267 16.013 -5.854 25.728 Atomic orbital electron populations 1.22144 0.70141 1.05885 1.05053 1.47990 1.08980 0.99388 1.49633 1.74077 1.03968 1.16024 1.19318 1.24736 0.94473 0.94677 1.05353 1.23220 0.92532 0.94276 1.07361 1.19257 0.89994 0.95424 0.85720 1.44304 1.33281 1.55114 1.05999 1.17554 0.88307 0.92116 0.93658 1.20512 0.99361 1.04916 0.96876 1.20846 0.96079 0.96076 0.96906 1.20460 0.99005 0.96901 0.92156 1.18250 0.90313 0.92307 0.97549 1.21144 0.95157 0.90373 1.47880 0.92553 1.25021 0.94917 0.99117 0.95434 1.69960 1.02429 1.32351 1.48854 0.86575 0.78695 0.84811 0.77851 1.20679 1.21271 1.19856 1.20823 0.94066 0.95740 0.99208 1.20448 1.01642 1.05182 0.94073 1.74087 1.03712 1.15535 1.18094 0.89177 0.87901 0.87838 0.78333 0.90954 0.90279 0.77264 0.87211 0.86585 0.95668 0.95692 0.92991 0.86602 0.87496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.51 11.57 59.85 0.69 1.20 16 2 N -0.16 -1.56 4.35 -16.63 -0.07 -1.63 16 3 N -0.29 -3.09 12.05 30.68 0.37 -2.72 16 4 C -0.01 -0.09 12.16 -17.21 -0.21 -0.30 16 5 C -0.01 -0.12 6.72 -82.25 -0.55 -0.67 16 6 C 0.22 2.43 5.50 -5.19 -0.03 2.40 16 7 N -0.75 -9.69 5.73 -59.80 -0.34 -10.03 16 8 C 0.18 2.95 6.65 -83.79 -0.56 2.39 16 9 C -0.19 -3.28 9.31 -39.38 -0.37 -3.65 16 10 C -0.08 -1.60 9.69 -39.61 -0.38 -1.98 16 11 C -0.08 -1.86 5.07 -104.59 -0.53 -2.39 16 12 C 0.05 1.39 5.10 -29.03 -0.15 1.24 16 13 C -0.51 -14.50 9.09 -34.44 -0.31 -14.82 16 14 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 17 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 21 C -0.08 -1.60 9.69 -39.61 -0.38 -1.98 16 22 C -0.19 -3.29 9.90 -39.38 -0.39 -3.68 16 23 N -0.27 -3.15 12.05 33.71 0.41 -2.75 16 24 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 25 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 26 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.20 1.33 8.06 -52.48 -0.42 0.90 16 28 H 0.07 0.83 7.94 -51.93 -0.41 0.42 16 29 H 0.08 0.75 7.96 -51.93 -0.41 0.33 16 30 H 0.39 4.78 8.48 -40.82 -0.35 4.43 16 31 H 0.11 1.56 6.73 -52.49 -0.35 1.21 16 32 H 0.12 2.24 8.06 -52.49 -0.42 1.81 16 33 H 0.03 0.69 8.08 -51.93 -0.42 0.27 16 34 H 0.02 0.68 8.08 -51.93 -0.42 0.27 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.12 2.26 8.06 -52.48 -0.42 1.84 16 37 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 324.21 15.07 4.89 4.89 Total: -1.00 -33.68 324.21 -7.17 -40.85 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -4.87 Total: 1.41 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: -3.27 Total: -20.73 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: 1.10 Total: -43.32 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.68 -7.17 -40.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902226932.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.607 kcal (2) G-P(sol) polarization free energy of solvation -33.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds