Wall clock time and date at job start Mon Mar 30 2020 05:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 N 1.28593 * 124.62012 * 2 1 4 4 C 1.31382 * 108.71834 * 180.02562 * 3 2 1 5 5 C 1.39675 * 105.89780 * 359.97438 * 4 3 2 6 6 C 1.50698 * 127.04529 * 180.02562 * 5 4 3 7 7 N 1.46506 * 109.46879 * 95.00342 * 6 5 4 8 8 C 1.39672 * 119.99822 * 179.97438 * 7 6 5 9 9 C 1.38910 * 120.07545 * 359.72121 * 8 7 6 10 10 C 1.38112 * 119.92589 * 179.76827 * 9 8 7 11 11 C 1.38279 * 120.06995 * 0.50930 * 10 9 8 12 12 C 1.50706 * 119.92282 * 179.76792 * 11 10 9 13 13 C 1.50703 * 109.46845 * 269.97623 * 12 11 10 14 14 H 1.07998 * 120.00034 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00028 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99924 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00183 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46973 * 89.99929 * 17 15 13 19 19 H 1.48495 * 109.47074 * 209.99951 * 17 15 13 20 20 H 1.48500 * 109.46875 * 330.00034 * 17 15 13 21 21 C 1.38285 * 120.15393 * 359.74763 * 11 10 9 22 22 C 1.38100 * 120.07482 * 359.97438 * 21 11 10 23 23 N 1.28602 * 124.61432 * 180.02562 * 2 1 3 24 24 H 1.08994 * 109.47481 * 269.96375 * 1 2 3 25 25 H 1.09006 * 109.46445 * 29.96624 * 1 2 3 26 26 H 1.08996 * 109.46651 * 149.96025 * 1 2 3 27 27 H 1.08005 * 127.04646 * 180.26045 * 4 3 2 28 28 H 1.09000 * 109.46996 * 214.99904 * 6 5 4 29 29 H 1.09000 * 109.47768 * 335.00281 * 6 5 4 30 30 H 0.96995 * 119.99888 * 359.97438 * 7 6 5 31 31 H 1.07998 * 120.04124 * 0.02562 * 9 8 7 32 32 H 1.08000 * 119.96173 * 180.25124 * 10 9 8 33 33 H 1.08993 * 109.47279 * 29.97539 * 12 11 10 34 34 H 1.09000 * 109.47262 * 149.98507 * 12 11 10 35 35 H 0.96995 * 120.00295 * 180.02562 * 16 15 13 36 36 H 1.08003 * 119.96407 * 180.02562 * 21 11 10 37 37 H 1.07999 * 120.04370 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.1957 1.0582 0.0000 4 6 3.4592 0.6983 -0.0006 5 6 3.4591 -0.6985 -0.0003 6 6 4.6619 -1.6064 -0.0002 7 7 4.9791 -1.9965 1.3759 8 6 6.0613 -2.8421 1.6302 9 6 6.8344 -3.3186 0.5791 10 6 7.9068 -4.1507 0.8345 11 6 8.2048 -4.5178 2.1339 12 6 9.3725 -5.4301 2.4084 13 6 8.9083 -6.8635 2.3770 14 1 7.8715 -7.0911 2.1778 15 6 9.8074 -7.8844 2.6015 16 7 11.0700 -7.6073 2.8436 17 14 9.2321 -9.6612 2.5619 18 1 9.3555 -10.1907 1.1800 19 1 10.0704 -10.4735 3.4799 20 1 7.8132 -9.7318 2.9942 21 6 7.4340 -4.0495 3.1822 22 6 6.3638 -3.2126 2.9344 23 7 2.1956 -1.0584 -0.0005 24 1 -0.3634 -0.0007 1.0276 25 1 -0.3632 0.8904 -0.5134 26 1 -0.3632 -0.8896 -0.5144 27 1 4.3212 1.3490 0.0032 28 1 4.4446 -2.4973 -0.5895 29 1 5.5131 -1.0822 -0.4346 30 1 4.4375 -1.6677 2.1103 31 1 6.5998 -3.0355 -0.4364 32 1 8.5107 -4.5182 0.0181 33 1 10.1380 -5.2794 1.6473 34 1 9.7872 -5.2040 3.3907 35 1 11.7026 -8.3255 3.0012 36 1 7.6697 -4.3379 4.1960 37 1 5.7619 -2.8475 3.7534 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902226932.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:54 Heat of formation + Delta-G solvation = 110.610006 kcal Electronic energy + Delta-G solvation = -19080.835716 eV Core-core repulsion = 16052.648154 eV Total energy + Delta-G solvation = -3028.187562 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.60052 -40.24723 -37.21211 -35.28873 -34.48004 -33.59052 -32.07115 -31.58343 -29.69278 -27.89064 -26.48432 -24.58043 -23.70774 -23.13423 -21.92845 -21.39789 -18.52493 -18.42005 -18.09158 -17.72764 -16.90938 -16.57586 -15.77973 -15.67850 -15.27434 -15.01447 -14.76669 -14.45823 -14.15817 -13.96873 -13.82312 -13.53921 -13.46943 -13.16038 -13.00314 -12.52338 -12.44736 -12.35532 -11.87602 -11.61326 -11.57252 -11.40258 -11.30404 -10.56484 -10.55619 -10.26570 -9.63382 -8.28356 -7.93664 -6.27550 0.70408 0.72227 0.92808 1.25347 1.41159 1.42381 1.44839 1.54026 2.43364 2.74674 3.07511 3.14937 3.20808 3.70565 4.13380 4.17731 4.27548 4.28765 4.29289 4.51717 4.55485 4.59744 4.66648 4.77596 4.82585 5.04504 5.08387 5.15518 5.24581 5.40723 5.43390 5.59583 5.69320 5.73868 5.84462 6.05893 6.27427 6.28262 6.58352 6.86071 6.90045 7.25814 7.40581 8.94230 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.039376 B = 0.002849 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.917216 B = 9824.287220 C =10129.873370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.158 5.158 3 N -0.309 5.309 4 C -0.010 4.010 5 C -0.022 4.022 6 C 0.222 3.778 7 N -0.740 5.740 8 C 0.201 3.799 9 C -0.190 4.190 10 C -0.089 4.089 11 C -0.123 4.123 12 C 0.063 3.937 13 C -0.524 4.524 14 H 0.052 0.948 15 C 0.001 3.999 16 N -0.932 5.932 17 Si 0.964 3.036 18 H -0.271 1.271 19 H -0.280 1.280 20 H -0.267 1.267 21 C -0.090 4.090 22 C -0.190 4.190 23 N -0.294 5.294 24 H 0.104 0.896 25 H 0.121 0.879 26 H 0.115 0.885 27 H 0.225 0.775 28 H 0.070 0.930 29 H 0.101 0.899 30 H 0.400 0.600 31 H 0.142 0.858 32 H 0.112 0.888 33 H -0.001 1.001 34 H -0.003 1.003 35 H 0.264 0.736 36 H 0.109 0.891 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.820 17.814 -6.747 28.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.060 5.060 3 N -0.150 5.150 4 C -0.192 4.192 5 C -0.184 4.184 6 C 0.096 3.904 7 N -0.373 5.373 8 C 0.099 3.901 9 C -0.212 4.212 10 C -0.107 4.107 11 C -0.124 4.124 12 C 0.026 3.974 13 C -0.562 4.562 14 H 0.070 0.930 15 C -0.197 4.197 16 N -0.573 5.573 17 Si 0.789 3.211 18 H -0.197 1.197 19 H -0.205 1.205 20 H -0.191 1.191 21 C -0.109 4.109 22 C -0.213 4.213 23 N -0.138 5.138 24 H 0.122 0.878 25 H 0.139 0.861 26 H 0.133 0.867 27 H 0.241 0.759 28 H 0.088 0.912 29 H 0.119 0.881 30 H 0.235 0.765 31 H 0.160 0.840 32 H 0.130 0.870 33 H 0.017 0.983 34 H 0.015 0.985 35 H 0.073 0.927 36 H 0.127 0.873 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -22.122 17.797 -6.930 29.226 hybrid contribution 0.951 -0.997 0.485 1.461 sum -21.171 16.800 -6.445 27.785 Atomic orbital electron populations 1.22570 0.67919 1.07424 1.06473 1.48466 1.10244 0.98750 1.48553 1.74076 1.04520 1.16516 1.19912 1.25176 0.95015 0.94592 1.04395 1.23181 0.92259 0.94709 1.08234 1.19383 0.91014 0.95696 0.84276 1.44360 1.31850 1.53648 1.07430 1.17598 0.88327 0.91149 0.93010 1.20708 0.98045 1.03720 0.98711 1.20854 0.97251 0.96927 0.95700 1.20142 0.99230 0.98915 0.94156 1.17988 0.91507 0.92908 0.95026 1.21461 0.95028 0.91877 1.47875 0.92966 1.25946 0.94944 1.03927 0.94837 1.70088 1.03651 1.33932 1.49615 0.85459 0.78420 0.78961 0.78296 1.19665 1.20497 1.19133 1.20803 0.95023 0.96696 0.98354 1.20624 1.00785 1.04254 0.95606 1.74041 1.04392 1.16637 1.18764 0.87794 0.86097 0.86680 0.75886 0.91224 0.88126 0.76503 0.84044 0.87011 0.98286 0.98460 0.92694 0.87308 0.84815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.68 11.57 127.77 1.48 2.16 16 2 N -0.16 -2.75 4.35 -206.54 -0.90 -3.64 16 3 N -0.31 -5.79 12.05 -56.86 -0.69 -6.48 16 4 C -0.01 -0.16 12.16 85.11 1.03 0.87 16 5 C -0.02 -0.41 6.72 42.97 0.29 -0.12 16 6 C 0.22 4.10 5.50 85.63 0.47 4.57 16 7 N -0.74 -16.59 5.73 -343.12 -1.96 -18.55 16 8 C 0.20 5.96 6.65 38.21 0.25 6.21 16 9 C -0.19 -6.00 9.31 22.40 0.21 -5.79 16 10 C -0.09 -3.53 9.69 22.25 0.22 -3.32 16 11 C -0.12 -5.64 5.07 -19.84 -0.10 -5.74 16 12 C 0.06 3.50 5.10 29.10 0.15 3.65 16 13 C -0.52 -31.03 9.09 25.60 0.23 -30.80 16 14 H 0.05 3.06 7.74 -2.91 -0.02 3.03 16 15 C 0.00 0.06 5.46 84.65 0.46 0.52 16 16 N -0.93 -57.69 13.29 21.45 0.28 -57.40 16 17 Si 0.96 45.49 29.54 68.60 2.03 47.52 16 18 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 19 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 20 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 21 C -0.09 -3.66 9.69 22.25 0.22 -3.44 16 22 C -0.19 -6.23 9.90 22.40 0.22 -6.01 16 23 N -0.29 -6.17 12.05 -47.25 -0.57 -6.74 16 24 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 25 H 0.12 0.41 8.14 -2.38 -0.02 0.39 16 26 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.22 2.24 8.06 -2.91 -0.02 2.22 16 28 H 0.07 1.38 7.94 -2.39 -0.02 1.36 16 29 H 0.10 1.49 7.96 -2.39 -0.02 1.47 16 30 H 0.40 8.33 8.48 -92.71 -0.79 7.55 16 31 H 0.14 3.54 6.73 -2.91 -0.02 3.52 16 32 H 0.11 4.42 8.06 -2.91 -0.02 4.40 16 33 H 0.00 -0.07 8.08 -2.39 -0.02 -0.09 16 34 H 0.00 -0.17 8.08 -2.39 -0.02 -0.19 16 35 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 36 H 0.11 4.43 8.06 -2.91 -0.02 4.40 16 37 H 0.13 3.61 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -74.23 324.21 3.62 -70.61 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 0.29 Total: 11.94 kcal Atomic # 6 Polarization: -42.38 SS G_CDS: 5.13 Total: -37.25 kcal Atomic # 7 Polarization: -88.99 SS G_CDS: -3.83 Total: -92.82 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -74.23 3.62 -70.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902226932.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.218 kcal (2) G-P(sol) polarization free energy of solvation -74.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds