Wall clock time and date at job start Mon Mar 30 2020 05:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47340 * 2 1 4 4 C 1.53002 * 109.47542 * 120.00413 * 2 1 3 5 5 N 1.46900 * 109.47107 * 61.09891 * 4 2 1 6 6 C 1.46896 * 110.99603 * 73.00745 * 5 4 2 7 7 C 1.50699 * 109.47108 * 279.56762 * 6 5 4 8 8 H 1.07996 * 120.00289 * 3.15115 * 7 6 5 9 9 C 1.37877 * 120.00164 * 183.15828 * 7 6 5 10 10 N 1.31516 * 120.00012 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00158 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47622 * 89.99454 * 11 9 7 13 13 H 1.48501 * 109.47134 * 209.99796 * 11 9 7 14 14 H 1.48500 * 109.46792 * 329.99028 * 11 9 7 15 15 C 1.46903 * 110.99756 * 196.95821 * 5 4 2 16 16 N 1.46492 * 109.47013 * 81.04962 * 15 5 4 17 17 C 1.47094 * 125.55579 * 90.00075 * 16 15 5 18 18 C 1.54084 * 103.80057 * 180.02562 * 17 16 15 19 19 O 1.45707 * 104.13738 * 359.92660 * 18 17 16 20 20 C 1.34000 * 125.55862 * 270.02093 * 16 15 5 21 21 S 1.71206 * 123.07814 * 359.97438 * 20 16 15 22 22 H 1.09000 * 109.47270 * 59.99961 * 1 2 3 23 23 H 1.09000 * 109.46947 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46749 * 299.99994 * 1 2 3 25 25 H 1.09004 * 109.47254 * 239.99925 * 2 1 3 26 26 H 1.09004 * 109.47233 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.46971 * 300.00222 * 3 2 1 28 28 H 1.08994 * 109.46885 * 60.00288 * 3 2 1 29 29 H 1.09003 * 109.46589 * 301.10281 * 4 2 1 30 30 H 1.09001 * 109.47563 * 181.10816 * 4 2 1 31 31 H 1.09001 * 109.47621 * 39.56659 * 6 5 4 32 32 H 1.08996 * 109.47247 * 159.56896 * 6 5 4 33 33 H 0.96996 * 120.00318 * 180.02562 * 10 9 7 34 34 H 1.08995 * 109.47074 * 321.04662 * 15 5 4 35 35 H 1.08995 * 109.46559 * 201.04960 * 15 5 4 36 36 H 1.08997 * 110.56265 * 61.43707 * 17 16 15 37 37 H 1.08998 * 110.55737 * 298.59809 * 17 16 15 38 38 H 1.08999 * 110.52133 * 118.62657 * 18 17 16 39 39 H 1.08992 * 110.52097 * 241.23173 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.5722 -2.1138 1.2359 6 6 2.3003 -2.9041 0.2343 7 6 1.7121 -2.6508 -1.1299 8 1 0.9144 -1.9326 -1.2491 9 6 2.1923 -3.3359 -2.2258 10 7 3.1640 -4.2102 -2.0807 11 14 1.4637 -3.0214 -3.9168 12 1 2.2141 -1.9270 -4.5835 13 1 1.5595 -4.2571 -4.7347 14 1 0.0380 -2.6301 -3.7765 15 6 1.6861 -2.7201 2.5691 16 7 0.5409 -2.3161 3.3886 17 6 -0.7384 -3.0357 3.4847 18 6 -1.5659 -2.1847 4.4672 19 8 -0.6773 -1.0857 4.8217 20 6 0.4879 -1.2306 4.1725 21 16 1.7891 -0.1296 4.3331 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6606 -0.2190 2.1391 30 1 3.1299 -0.7042 1.2592 31 1 3.3511 -2.6143 0.2364 32 1 2.2152 -3.9636 0.4755 33 1 3.5021 -4.6920 -2.8517 34 1 2.6084 -2.3847 3.0432 35 1 1.7001 -3.8058 2.4744 36 1 -0.5844 -4.0387 3.8826 37 1 -1.2268 -3.0798 2.5113 38 1 -2.4657 -1.8072 3.9815 39 1 -1.8255 -2.7665 5.3515 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919944740.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:48 Heat of formation + Delta-G solvation = -1.492284 kcal Electronic energy + Delta-G solvation = -20185.594844 eV Core-core repulsion = 17255.697362 eV Total energy + Delta-G solvation = -2929.897481 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.52938 -37.80884 -35.50742 -33.42326 -32.44890 -30.99988 -27.65140 -26.55981 -26.39793 -24.18312 -23.90254 -22.47307 -21.02509 -19.06444 -18.17898 -17.31359 -16.69363 -16.36483 -15.48046 -15.21114 -14.56784 -14.36046 -14.14381 -13.75991 -13.60123 -12.95038 -12.74015 -12.59806 -12.41455 -12.21849 -11.72453 -11.66407 -11.31554 -11.24795 -11.11045 -10.82203 -10.61755 -10.21754 -10.17668 -9.99729 -9.80239 -9.57532 -9.18825 -8.46865 -7.78260 -7.57880 -7.21251 -6.10205 -4.09443 1.12445 1.61207 2.69995 3.16994 3.26543 3.33711 3.36477 3.93414 4.32859 4.37825 4.43613 4.81577 4.96021 5.09389 5.24517 5.29826 5.51824 5.64233 5.76821 5.80815 6.00530 6.25867 6.36706 6.41488 6.50834 6.57024 6.65100 6.67713 6.77128 6.90950 7.04254 7.14515 7.21222 7.43341 7.76654 7.95902 8.06954 8.38916 8.96956 9.53047 11.00073 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.021061 B = 0.006183 C = 0.005642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.172515 B = 4527.645418 C = 4961.489231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.105 4.105 3 C -0.142 4.142 4 C 0.054 3.946 5 N -0.545 5.545 6 C 0.197 3.803 7 C -0.505 4.505 8 H 0.078 0.922 9 C 0.055 3.945 10 N -0.898 5.898 11 Si 0.893 3.107 12 H -0.280 1.280 13 H -0.288 1.288 14 H -0.273 1.273 15 C 0.284 3.716 16 N -0.537 5.537 17 C 0.050 3.950 18 C 0.023 3.977 19 O -0.280 6.280 20 C 0.492 3.508 21 S -0.548 6.548 22 H 0.034 0.966 23 H 0.067 0.933 24 H 0.030 0.970 25 H 0.107 0.893 26 H 0.047 0.953 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.092 0.908 30 H 0.026 0.974 31 H 0.001 0.999 32 H 0.027 0.973 33 H 0.261 0.739 34 H 0.082 0.918 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.089 0.721 9.963 13.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.124 4.124 3 C -0.200 4.200 4 C -0.075 4.075 5 N -0.270 5.270 6 C 0.072 3.928 7 C -0.543 4.543 8 H 0.096 0.904 9 C -0.146 4.146 10 N -0.538 5.538 11 Si 0.721 3.279 12 H -0.206 1.206 13 H -0.214 1.214 14 H -0.198 1.198 15 C 0.074 3.926 16 N -0.253 5.253 17 C -0.075 4.075 18 C -0.055 4.055 19 O -0.183 6.183 20 C 0.193 3.807 21 S -0.416 6.416 22 H 0.053 0.947 23 H 0.086 0.914 24 H 0.050 0.950 25 H 0.125 0.875 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.110 0.890 30 H 0.044 0.956 31 H 0.018 0.982 32 H 0.045 0.955 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -8.707 1.283 9.877 13.229 hybrid contribution -0.348 -0.704 -0.991 1.264 sum -9.055 0.579 8.886 12.700 Atomic orbital electron populations 1.21623 0.96196 1.01840 0.98686 1.21413 0.95593 0.94324 1.01021 1.21796 1.00484 0.97302 1.00415 1.22682 0.97201 0.88084 0.99490 1.61839 1.58949 1.03496 1.02754 1.19805 0.91678 0.91982 0.89288 1.21363 1.19367 1.22783 0.90797 0.90363 1.24992 0.95227 0.95190 0.99204 1.69945 1.27021 1.26210 1.30624 0.86571 0.79634 0.77620 0.84095 1.20639 1.21361 1.19793 1.22257 0.84001 0.98534 0.87805 1.48904 1.16290 1.21010 1.39129 1.23298 0.84109 0.97687 1.02386 1.24637 0.94031 0.86966 0.99884 1.87606 1.22620 1.46037 1.62043 1.25745 0.88336 0.86740 0.79846 1.93424 1.24688 1.44580 1.78902 0.94659 0.91369 0.95039 0.87502 0.93401 0.93580 0.93612 0.89022 0.95551 0.98159 0.95499 0.92919 0.90029 0.88116 0.87969 0.87018 0.87091 0.87227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.31 8.39 37.15 0.31 -1.99 16 2 C -0.11 -2.05 2.40 -90.62 -0.22 -2.27 16 3 C -0.14 -2.47 9.19 37.16 0.34 -2.13 16 4 C 0.05 1.07 4.11 -3.82 -0.02 1.05 16 5 N -0.54 -10.55 3.81 -239.99 -0.92 -11.47 16 6 C 0.20 4.61 4.78 -4.98 -0.02 4.59 16 7 C -0.50 -12.85 7.22 -34.44 -0.25 -13.10 16 8 H 0.08 1.96 4.54 -52.49 -0.24 1.72 16 9 C 0.06 1.47 5.46 -17.82 -0.10 1.37 16 10 N -0.90 -25.23 13.29 55.43 0.74 -24.49 16 11 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 13 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 15 C 0.28 4.56 5.73 -63.32 -0.36 4.19 16 16 N -0.54 -7.37 3.17 -178.49 -0.57 -7.94 16 17 C 0.05 0.45 7.69 -3.15 -0.02 0.43 16 18 C 0.02 0.18 8.22 37.72 0.31 0.49 16 19 O -0.28 -3.68 11.12 -14.43 -0.16 -3.84 16 20 C 0.49 7.64 7.56 53.71 0.41 8.05 16 21 S -0.55 -10.50 26.90 -107.50 -2.89 -13.40 16 22 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.07 1.33 6.71 -51.93 -0.35 0.98 16 24 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.11 2.41 5.13 -51.93 -0.27 2.14 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.09 1.81 3.94 -36.42 -0.14 1.67 16 30 H 0.03 0.56 7.75 -51.93 -0.40 0.16 16 31 H 0.00 0.02 7.68 -51.93 -0.40 -0.38 16 32 H 0.03 0.66 7.44 -51.93 -0.39 0.27 16 33 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 34 H 0.08 1.40 7.13 -51.93 -0.37 1.03 16 35 H 0.10 1.47 7.43 -51.93 -0.39 1.08 16 36 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 319.24 15.07 4.81 4.81 Total: -1.00 -30.81 319.24 -9.51 -40.31 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -5.88 Total: -0.34 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: 0.38 Total: 0.67 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: -0.75 Total: -43.91 kcal Atomic # 8 Polarization: -3.68 SS G_CDS: -0.16 Total: -3.84 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: -10.50 SS G_CDS: -2.89 Total: -13.40 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.81 -9.51 -40.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919944740.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.821 kcal (2) G-P(sol) polarization free energy of solvation -30.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds