Wall clock time and date at job start Mon Mar 30 2020 04:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00047 * 2 1 4 4 H 1.48501 * 109.46746 * 269.99764 * 3 2 1 5 5 H 1.48498 * 109.46975 * 29.99474 * 3 2 1 6 6 H 1.48496 * 109.47510 * 149.99831 * 3 2 1 7 7 C 1.37884 * 119.99936 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99797 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99488 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46679 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47151 * 179.97438 * 10 9 7 12 12 C 1.50705 * 109.47380 * 180.02562 * 11 10 9 13 13 O 1.20829 * 119.99832 * 359.97438 * 12 11 10 14 14 O 1.34229 * 119.99988 * 180.02562 * 12 11 10 15 15 C 1.45199 * 116.99656 * 179.97438 * 14 12 11 16 16 C 1.53007 * 109.46907 * 179.97438 * 15 14 12 17 17 O 1.42901 * 109.46873 * 64.99932 * 16 15 14 18 18 C 1.42901 * 113.99889 * 179.97438 * 17 16 15 19 19 H 1.09003 * 110.79994 * 26.37105 * 18 17 16 20 20 C 1.54807 * 110.90460 * 149.99804 * 18 17 16 21 21 C 1.54105 * 104.18504 * 139.08302 * 20 18 17 22 22 O 1.43746 * 107.42259 * 1.95340 * 21 20 18 23 23 C 1.44586 * 106.86832 * 333.67423 * 22 21 20 24 24 H 0.96995 * 120.00370 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46992 * 60.00701 * 9 7 2 26 26 H 1.08994 * 109.47295 * 299.99628 * 9 7 2 27 27 H 1.09008 * 109.47295 * 60.00181 * 10 9 7 28 28 H 1.09005 * 109.47473 * 300.00170 * 10 9 7 29 29 H 1.08998 * 109.47284 * 60.00233 * 11 10 9 30 30 H 1.09005 * 109.47089 * 300.00428 * 11 10 9 31 31 H 1.08998 * 109.47381 * 59.99735 * 15 14 12 32 32 H 1.08997 * 109.47061 * 299.99400 * 15 14 12 33 33 H 1.09001 * 109.46873 * 305.00118 * 16 15 14 34 34 H 1.09000 * 109.47057 * 184.99883 * 16 15 14 35 35 H 1.08996 * 110.48875 * 20.40570 * 20 18 17 36 36 H 1.09003 * 110.60294 * 257.81062 * 20 18 17 37 37 H 1.09002 * 109.88076 * 121.45430 * 21 20 18 38 38 H 1.08996 * 109.87584 * 242.45546 * 21 20 18 39 39 H 1.08999 * 110.50225 * 281.37988 * 23 22 21 40 40 H 1.08994 * 110.77338 * 158.50734 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0023 11 6 5.5515 -2.6365 0.0022 12 6 6.0540 -4.0573 0.0027 13 8 5.2688 -4.9757 0.0036 14 8 7.3737 -4.3025 0.0033 15 6 7.7853 -5.6950 0.0044 16 6 9.3133 -5.7750 0.0042 17 8 9.8189 -5.2303 1.2248 18 6 11.2439 -5.2577 1.3272 19 1 11.7033 -5.2443 0.3388 20 6 11.7583 -4.0809 2.1915 21 6 12.8775 -4.7030 3.0490 22 8 13.0032 -6.0808 2.6587 23 6 11.7165 -6.4892 2.1409 24 1 -0.4850 0.8400 -0.0004 25 1 3.8745 -0.6800 0.8912 26 1 3.8752 -0.6804 -0.8888 27 1 3.6586 -3.1510 -0.8876 28 1 3.6578 -3.1498 0.8925 29 1 5.9149 -2.1220 0.8918 30 1 5.9149 -2.1233 -0.8882 31 1 7.3958 -6.1897 -0.8854 32 1 7.3954 -6.1884 0.8946 33 1 9.7068 -5.2060 -0.8381 34 1 9.6225 -6.8164 -0.0845 35 1 10.9601 -3.6965 2.8265 36 1 12.1579 -3.2872 1.5602 37 1 13.8166 -4.1797 2.8691 38 1 12.6142 -4.6394 4.1047 39 1 11.0252 -6.6980 2.9574 40 1 11.8190 -7.3604 1.4941 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922851816.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:46 Heat of formation + Delta-G solvation = -216.029097 kcal Electronic energy + Delta-G solvation = -20275.857841 eV Core-core repulsion = 16861.611723 eV Total energy + Delta-G solvation = -3414.246118 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.52709 -40.58733 -38.53630 -37.48350 -36.18002 -34.19502 -32.79925 -31.27992 -30.23721 -29.42199 -26.09953 -24.05978 -23.56185 -22.45982 -22.29998 -21.40676 -18.95417 -18.74501 -18.42743 -17.76134 -17.52459 -17.13811 -16.45826 -16.21444 -16.08397 -15.88446 -15.54142 -14.87964 -14.71803 -14.40802 -14.18326 -13.91327 -13.69998 -13.30462 -13.22516 -12.87860 -12.68957 -12.53265 -12.41768 -12.30645 -11.89111 -11.77130 -11.74282 -11.66670 -11.50303 -11.41711 -11.28329 -10.86303 -10.74173 -10.48383 -8.27001 -6.32648 1.20474 1.40295 1.43318 1.55395 1.67904 2.36215 2.39964 3.08323 3.09597 3.50720 3.68135 3.81040 3.88199 3.96452 4.04516 4.09845 4.18275 4.19082 4.23466 4.38699 4.48925 4.54725 4.68376 4.72284 4.75912 4.81374 4.86092 4.92684 4.94926 5.01901 5.02090 5.35654 5.53702 5.57790 5.68253 5.72880 6.16763 6.30547 6.75907 6.76642 7.31739 8.90394 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.030282 B = 0.002655 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.417280 B =10541.786420 C =11237.710291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.003 4.003 3 Si 0.960 3.040 4 H -0.264 1.264 5 H -0.287 1.287 6 H -0.236 1.236 7 C -0.539 4.539 8 H 0.022 0.978 9 C -0.010 4.010 10 C -0.085 4.085 11 C -0.106 4.106 12 C 0.466 3.534 13 O -0.545 6.545 14 O -0.352 6.352 15 C 0.057 3.943 16 C 0.065 3.935 17 O -0.388 6.388 18 C 0.054 3.946 19 H 0.098 0.902 20 C -0.157 4.157 21 C 0.044 3.956 22 O -0.395 6.395 23 C 0.024 3.976 24 H 0.266 0.734 25 H 0.032 0.968 26 H 0.032 0.968 27 H 0.045 0.955 28 H 0.042 0.958 29 H 0.124 0.876 30 H 0.129 0.871 31 H 0.097 0.903 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.103 0.897 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.511 -9.518 1.309 31.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.199 4.199 3 Si 0.782 3.218 4 H -0.189 1.189 5 H -0.214 1.214 6 H -0.159 1.159 7 C -0.577 4.577 8 H 0.041 0.959 9 C -0.048 4.048 10 C -0.123 4.123 11 C -0.143 4.143 12 C 0.312 3.688 13 O -0.435 6.435 14 O -0.269 6.269 15 C -0.016 4.016 16 C -0.011 4.011 17 O -0.308 6.308 18 C -0.004 4.004 19 H 0.116 0.884 20 C -0.195 4.195 21 C -0.032 4.032 22 O -0.315 6.315 23 C -0.053 4.053 24 H 0.075 0.925 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.142 0.858 30 H 0.147 0.853 31 H 0.115 0.885 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.120 0.880 35 H 0.099 0.901 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 30.244 -9.779 1.481 31.820 hybrid contribution -0.811 0.258 -0.073 0.854 sum 29.434 -9.521 1.408 30.967 Atomic orbital electron populations 1.70097 1.08654 1.28278 1.52666 1.26177 0.95729 1.04076 0.93912 0.85519 0.79686 0.77186 0.79397 1.18885 1.21351 1.15873 1.21531 0.92558 0.92922 1.50702 0.95939 1.19543 0.93576 0.94003 0.97632 1.21155 0.92315 0.97803 1.01034 1.21540 0.95991 0.89033 1.07723 1.24260 0.80265 0.93437 0.70881 1.90657 1.57615 1.48127 1.47073 1.86558 1.25190 1.31427 1.83743 1.23326 0.95068 0.79601 1.03624 1.22798 0.90465 1.00441 0.87407 1.87995 1.20454 1.83169 1.39153 1.23777 0.81132 0.95133 1.00336 0.88449 1.23019 0.98740 0.98321 0.99378 1.23273 0.99809 0.81634 0.98497 1.88914 1.31844 1.27469 1.83268 1.24128 0.85002 0.98301 0.97870 0.92511 0.94997 0.94941 0.93633 0.93900 0.85754 0.85295 0.88492 0.91350 0.90433 0.87966 0.90125 0.88341 0.87959 0.91794 0.91870 0.87124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.25 13.96 21.45 0.30 -60.95 16 2 C 0.00 -0.17 5.47 84.66 0.46 0.29 16 3 Si 0.96 43.53 27.47 68.60 1.88 45.41 16 4 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.24 -9.53 6.54 99.48 0.65 -8.88 16 7 C -0.54 -31.87 9.66 25.60 0.25 -31.62 16 8 H 0.02 1.49 7.99 -2.91 -0.02 1.47 16 9 C -0.01 -0.47 4.04 29.85 0.12 -0.35 16 10 C -0.09 -3.42 4.44 30.59 0.14 -3.28 16 11 C -0.11 -3.04 5.81 29.85 0.17 -2.87 16 12 C 0.47 14.20 7.96 71.24 0.57 14.76 16 13 O -0.54 -20.41 15.73 21.96 0.35 -20.06 16 14 O -0.35 -8.91 10.19 -48.76 -0.50 -9.40 16 15 C 0.06 1.12 5.84 71.98 0.42 1.54 16 16 C 0.06 0.85 6.16 71.98 0.44 1.30 16 17 O -0.39 -6.80 10.08 -145.57 -1.47 -8.26 16 18 C 0.05 0.71 3.63 31.89 0.12 0.82 16 19 H 0.10 0.94 7.83 -2.39 -0.02 0.92 16 20 C -0.16 -1.94 6.78 31.58 0.21 -1.72 16 21 C 0.04 0.54 7.69 72.36 0.56 1.10 16 22 O -0.40 -6.61 11.54 -148.98 -1.72 -8.33 16 23 C 0.02 0.32 7.45 72.66 0.54 0.86 16 24 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 25 H 0.03 1.37 7.20 -2.39 -0.02 1.36 16 26 H 0.03 1.37 7.57 -2.39 -0.02 1.35 16 27 H 0.04 1.95 8.10 -2.38 -0.02 1.93 16 28 H 0.04 1.86 8.10 -2.38 -0.02 1.84 16 29 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 30 H 0.13 3.03 8.14 -2.38 -0.02 3.01 16 31 H 0.10 1.68 8.13 -2.39 -0.02 1.66 16 32 H 0.07 1.47 8.13 -2.39 -0.02 1.45 16 33 H 0.08 0.84 8.12 -2.39 -0.02 0.82 16 34 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.08 1.17 8.08 -2.39 -0.02 1.15 16 36 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -76.08 337.36 3.79 -72.29 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: 0.95 Total: 8.47 kcal Atomic # 6 Polarization: -23.17 SS G_CDS: 4.00 Total: -19.17 kcal Atomic # 7 Polarization: -61.25 SS G_CDS: 0.30 Total: -60.95 kcal Atomic # 8 Polarization: -42.72 SS G_CDS: -3.34 Total: -46.06 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.88 Total: 45.41 kcal Total: -76.08 3.79 -72.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922851816.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.735 kcal (2) G-P(sol) polarization free energy of solvation -76.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds