Wall clock time and date at job start Mon Mar 30 2020 05:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46726 * 2 1 4 4 C 1.50691 * 109.47360 * 120.00315 * 2 1 3 5 5 O 1.20829 * 120.00341 * 119.99704 * 4 2 1 6 6 O 1.34232 * 119.99924 * 300.00089 * 4 2 1 7 7 C 1.45204 * 116.99717 * 179.97438 * 6 4 2 8 8 C 1.53006 * 109.46720 * 179.97438 * 7 6 4 9 9 O 1.42905 * 109.46785 * 65.00018 * 8 7 6 10 10 C 1.42900 * 113.99433 * 179.97438 * 9 8 7 11 11 C 1.50704 * 109.46914 * 180.02562 * 10 9 8 12 12 H 1.08003 * 119.99941 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00015 * 179.97438 * 11 10 9 14 14 N 1.31510 * 120.00300 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 120.00100 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46838 * 60.00135 * 15 13 11 17 17 H 1.48493 * 109.47070 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47009 * 300.00669 * 15 13 11 19 19 C 1.53004 * 109.46912 * 240.00344 * 2 1 3 20 20 H 1.09002 * 110.33108 * 300.69912 * 19 2 1 21 21 C 1.54483 * 110.37211 * 178.44824 * 19 2 1 22 22 C 1.54507 * 104.06211 * 217.07935 * 21 19 2 23 23 C 1.54477 * 104.06510 * 359.97438 * 22 21 19 24 24 O 1.44428 * 110.37485 * 62.94944 * 19 2 1 25 25 H 1.08999 * 109.47034 * 59.99581 * 1 2 3 26 26 H 1.09000 * 109.47177 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47015 * 299.99720 * 1 2 3 28 28 H 1.09000 * 109.47068 * 299.99517 * 7 6 4 29 29 H 1.08992 * 109.47397 * 59.99997 * 7 6 4 30 30 H 1.09000 * 109.46905 * 184.99603 * 8 7 6 31 31 H 1.08998 * 109.47277 * 305.00008 * 8 7 6 32 32 H 1.09007 * 109.47542 * 299.99735 * 10 9 8 33 33 H 1.08992 * 109.47739 * 60.00475 * 10 9 8 34 34 H 0.97003 * 120.00708 * 179.97438 * 14 13 11 35 35 H 1.09005 * 110.50990 * 335.72659 * 21 19 2 36 36 H 1.09001 * 110.51072 * 98.43272 * 21 19 2 37 37 H 1.09000 * 110.50930 * 118.64837 * 22 21 19 38 38 H 1.09006 * 110.50971 * 241.35374 * 22 21 19 39 39 H 1.08996 * 110.37125 * 142.80919 * 23 22 21 40 40 H 1.08999 * 110.37544 * 265.03608 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 8 2.7270 -1.6928 1.1195 6 8 1.7081 -0.2519 2.4495 7 6 2.2269 -0.9865 3.5895 8 6 1.7559 -0.3193 4.8833 9 8 0.3340 -0.4225 4.9822 10 6 -0.2112 0.1722 6.1617 11 6 -1.7089 0.0051 6.1622 12 1 -2.1957 -0.5047 5.3439 13 6 -2.4577 0.5021 7.2078 14 7 -1.8650 1.1224 8.2045 15 14 -4.3143 0.2956 7.2081 16 1 -4.6515 -1.1504 7.1809 17 1 -4.8808 0.9135 8.4338 18 1 -4.8864 0.9599 6.0096 19 6 2.0400 -0.7212 -1.2493 20 1 1.6742 -1.7478 -1.2698 21 6 3.5841 -0.6995 -1.2902 22 6 3.9176 -0.5234 -2.7885 23 6 2.5356 -0.4603 -3.4758 24 8 1.6270 -0.0165 -2.4405 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8626 -2.0133 3.5564 29 1 3.3163 -0.9863 3.5567 30 1 2.2165 -0.8164 5.7370 31 1 2.0442 0.7319 4.8759 32 1 0.2087 -0.3151 7.0418 33 1 0.0363 1.2335 6.1812 34 1 -2.3917 1.4724 8.9401 35 1 3.9697 0.1402 -0.7118 36 1 3.9893 -1.6399 -0.9166 37 1 4.4681 0.4032 -2.9509 38 1 4.4877 -1.3769 -3.1557 39 1 2.5527 0.2561 -4.2971 40 1 2.2471 -1.4465 -3.8394 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000923060855.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:20 Heat of formation + Delta-G solvation = -193.058106 kcal Electronic energy + Delta-G solvation = -21040.022604 eV Core-core repulsion = 17626.772583 eV Total energy + Delta-G solvation = -3413.250021 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.75739 -39.38566 -37.10994 -36.05325 -34.03530 -32.76800 -32.27806 -30.11674 -28.41493 -26.95329 -24.86234 -23.17164 -22.38660 -21.86427 -21.48090 -20.24454 -17.81291 -16.99419 -16.49461 -16.40238 -16.23060 -15.84191 -15.26792 -15.07628 -14.64897 -14.30370 -13.99393 -13.63111 -13.44888 -13.17386 -12.73937 -12.65680 -12.20187 -11.97130 -11.92677 -11.64561 -11.44034 -11.36101 -10.98181 -10.95617 -10.86950 -10.81511 -10.72067 -10.40392 -10.25421 -10.06822 -10.00104 -9.14883 -8.88095 -8.22068 -6.12248 -4.14140 2.23560 2.60295 3.32285 3.34808 3.38818 3.76582 4.20820 4.31969 4.42527 4.62594 4.68009 4.73101 4.75502 4.93378 5.02780 5.16502 5.22129 5.24280 5.30794 5.43463 5.44358 5.49012 5.59460 5.76290 5.80505 5.83722 5.84959 5.85382 5.92423 6.07437 6.23258 6.54428 6.59152 7.04372 7.38950 7.77099 7.81558 8.11862 8.51507 8.98055 9.50663 10.99254 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.030527 B = 0.003246 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.001526 B = 8623.550835 C = 9320.532936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.078 4.078 3 H 0.115 0.885 4 C 0.469 3.531 5 O -0.515 6.515 6 O -0.336 6.336 7 C 0.074 3.926 8 C 0.061 3.939 9 O -0.391 6.391 10 C 0.195 3.805 11 C -0.516 4.516 12 H 0.066 0.934 13 C 0.057 3.943 14 N -0.899 5.899 15 Si 0.909 3.091 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.092 3.908 20 H 0.079 0.921 21 C -0.146 4.146 22 C -0.157 4.157 23 C 0.045 3.955 24 O -0.367 6.367 25 H 0.077 0.923 26 H 0.060 0.940 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.006 0.994 33 H 0.007 0.993 34 H 0.265 0.735 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.568 -2.321 -19.810 23.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.098 4.098 3 H 0.133 0.867 4 C 0.312 3.688 5 O -0.405 6.405 6 O -0.251 6.251 7 C 0.001 3.999 8 C -0.016 4.016 9 O -0.310 6.310 10 C 0.121 3.879 11 C -0.554 4.554 12 H 0.085 0.915 13 C -0.145 4.145 14 N -0.538 5.538 15 Si 0.736 3.264 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.199 1.199 19 C 0.034 3.966 20 H 0.097 0.903 21 C -0.184 4.184 22 C -0.195 4.195 23 C -0.032 4.032 24 O -0.286 6.286 25 H 0.095 0.905 26 H 0.079 0.921 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.024 0.976 33 H 0.025 0.975 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.107 0.893 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.110 0.890 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.436 -2.458 -19.766 22.968 hybrid contribution -0.413 -0.159 0.479 0.652 sum 11.023 -2.617 -19.287 22.368 Atomic orbital electron populations 1.21746 0.90874 1.03299 1.04200 1.20946 0.99422 1.00988 0.88403 0.86728 1.23348 0.77168 0.82837 0.85426 1.90627 1.36184 1.26079 1.87585 1.86596 1.69134 1.54964 1.14434 1.23233 0.97803 0.96363 0.82544 1.22322 0.86334 0.99545 0.93422 1.87919 1.16345 1.80389 1.46395 1.20232 0.94116 0.92231 0.81362 1.21012 0.90636 1.37122 1.06632 0.91540 1.24946 0.99490 0.94982 0.95040 1.69947 1.36158 1.37895 1.09828 0.86382 0.84047 0.78553 0.77429 1.20004 1.21148 1.19935 1.22733 0.93686 0.95498 0.84664 0.90296 1.22995 0.95436 1.03889 0.96095 1.22965 0.98006 1.02833 0.95657 1.23446 0.88132 1.00120 0.91461 1.89167 1.54532 1.66352 1.18598 0.90454 0.92099 0.90248 0.90457 0.90446 0.91943 0.93183 0.97634 0.97485 0.92561 0.90997 0.89267 0.90702 0.90536 0.89011 0.92146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.01 37.16 0.33 -1.39 16 2 C -0.08 -0.94 2.50 -91.77 -0.23 -1.17 16 3 H 0.11 1.24 8.14 -51.93 -0.42 0.81 16 4 C 0.47 6.83 7.00 36.00 0.25 7.08 16 5 O -0.52 -8.06 14.26 -18.75 -0.27 -8.32 16 6 O -0.34 -5.56 10.09 -42.03 -0.42 -5.98 16 7 C 0.07 1.17 5.85 37.16 0.22 1.38 16 8 C 0.06 1.12 6.33 37.16 0.24 1.35 16 9 O -0.39 -9.45 10.30 -38.80 -0.40 -9.85 16 10 C 0.19 5.33 5.69 36.01 0.20 5.53 16 11 C -0.52 -15.23 9.43 -34.44 -0.32 -15.55 16 12 H 0.07 1.95 7.81 -52.48 -0.41 1.54 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 15 Si 0.91 21.84 29.54 -169.99 -5.02 16.82 16 16 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 19 C 0.09 1.01 2.39 -25.95 -0.06 0.95 16 20 H 0.08 0.91 8.13 -51.93 -0.42 0.49 16 21 C -0.15 -1.44 5.39 -25.16 -0.14 -1.58 16 22 C -0.16 -1.18 7.09 -25.17 -0.18 -1.36 16 23 C 0.05 0.36 7.63 37.93 0.29 0.65 16 24 O -0.37 -4.04 10.87 -35.23 -0.38 -4.43 16 25 H 0.08 0.84 7.81 -51.93 -0.41 0.43 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.08 1.05 8.11 -51.93 -0.42 0.62 16 28 H 0.08 1.24 8.13 -51.93 -0.42 0.82 16 29 H 0.08 1.01 8.13 -51.93 -0.42 0.59 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.07 0.71 7.87 -51.93 -0.41 0.30 16 36 H 0.09 0.94 7.44 -51.93 -0.39 0.56 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 336.62 15.07 5.07 5.07 Total: -1.00 -32.52 336.62 -6.84 -39.37 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -6.66 Total: -4.01 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: 0.51 Total: -2.56 kcal Atomic # 7 Polarization: -26.84 SS G_CDS: 0.74 Total: -26.10 kcal Atomic # 8 Polarization: -27.11 SS G_CDS: -1.47 Total: -28.58 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.52 -6.84 -39.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923060855.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.692 kcal (2) G-P(sol) polarization free energy of solvation -32.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds