Wall clock time and date at job start Mon Mar 30 2020 05:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46726 * 2 1 4 4 C 1.50691 * 109.47360 * 120.00315 * 2 1 3 5 5 O 1.20829 * 120.00341 * 119.99704 * 4 2 1 6 6 O 1.34232 * 119.99924 * 300.00089 * 4 2 1 7 7 C 1.45204 * 116.99717 * 179.97438 * 6 4 2 8 8 C 1.53006 * 109.46720 * 179.97438 * 7 6 4 9 9 O 1.42905 * 109.46785 * 65.00018 * 8 7 6 10 10 C 1.42900 * 113.99433 * 179.97438 * 9 8 7 11 11 C 1.50704 * 109.46914 * 180.02562 * 10 9 8 12 12 H 1.08003 * 119.99941 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00015 * 179.97438 * 11 10 9 14 14 N 1.31510 * 120.00300 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 120.00100 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46838 * 60.00135 * 15 13 11 17 17 H 1.48493 * 109.47070 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47009 * 300.00669 * 15 13 11 19 19 C 1.53004 * 109.46912 * 240.00344 * 2 1 3 20 20 H 1.09002 * 110.33108 * 300.69912 * 19 2 1 21 21 C 1.54483 * 110.37211 * 178.44824 * 19 2 1 22 22 C 1.54507 * 104.06211 * 217.07935 * 21 19 2 23 23 C 1.54477 * 104.06510 * 359.97438 * 22 21 19 24 24 O 1.44428 * 110.37485 * 62.94944 * 19 2 1 25 25 H 1.08999 * 109.47034 * 59.99581 * 1 2 3 26 26 H 1.09000 * 109.47177 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47015 * 299.99720 * 1 2 3 28 28 H 1.09000 * 109.47068 * 299.99517 * 7 6 4 29 29 H 1.08992 * 109.47397 * 59.99997 * 7 6 4 30 30 H 1.09000 * 109.46905 * 184.99603 * 8 7 6 31 31 H 1.08998 * 109.47277 * 305.00008 * 8 7 6 32 32 H 1.09007 * 109.47542 * 299.99735 * 10 9 8 33 33 H 1.08992 * 109.47739 * 60.00475 * 10 9 8 34 34 H 0.97003 * 120.00708 * 179.97438 * 14 13 11 35 35 H 1.09005 * 110.50990 * 335.72659 * 21 19 2 36 36 H 1.09001 * 110.51072 * 98.43272 * 21 19 2 37 37 H 1.09000 * 110.50930 * 118.64837 * 22 21 19 38 38 H 1.09006 * 110.50971 * 241.35374 * 22 21 19 39 39 H 1.08996 * 110.37125 * 142.80919 * 23 22 21 40 40 H 1.08999 * 110.37544 * 265.03608 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 8 2.7270 -1.6928 1.1195 6 8 1.7081 -0.2519 2.4495 7 6 2.2269 -0.9865 3.5895 8 6 1.7559 -0.3193 4.8833 9 8 0.3340 -0.4225 4.9822 10 6 -0.2112 0.1722 6.1617 11 6 -1.7089 0.0051 6.1622 12 1 -2.1957 -0.5047 5.3439 13 6 -2.4577 0.5021 7.2078 14 7 -1.8650 1.1224 8.2045 15 14 -4.3143 0.2956 7.2081 16 1 -4.6515 -1.1504 7.1809 17 1 -4.8808 0.9135 8.4338 18 1 -4.8864 0.9599 6.0096 19 6 2.0400 -0.7212 -1.2493 20 1 1.6742 -1.7478 -1.2698 21 6 3.5841 -0.6995 -1.2902 22 6 3.9176 -0.5234 -2.7885 23 6 2.5356 -0.4603 -3.4758 24 8 1.6270 -0.0165 -2.4405 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8626 -2.0133 3.5564 29 1 3.3163 -0.9863 3.5567 30 1 2.2165 -0.8164 5.7370 31 1 2.0442 0.7319 4.8759 32 1 0.2087 -0.3151 7.0418 33 1 0.0363 1.2335 6.1812 34 1 -2.3917 1.4724 8.9401 35 1 3.9697 0.1402 -0.7118 36 1 3.9893 -1.6399 -0.9166 37 1 4.4681 0.4032 -2.9509 38 1 4.4877 -1.3769 -3.1557 39 1 2.5527 0.2561 -4.2971 40 1 2.2471 -1.4465 -3.8394 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000923060855.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:19 Heat of formation + Delta-G solvation = -213.445568 kcal Electronic energy + Delta-G solvation = -21040.906671 eV Core-core repulsion = 17626.772583 eV Total energy + Delta-G solvation = -3414.134088 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.87093 -40.26653 -38.75430 -37.47743 -35.04851 -34.89936 -32.99856 -31.64744 -29.26659 -28.98043 -25.91446 -24.58927 -24.12053 -23.08399 -22.22145 -21.30662 -18.93398 -18.69710 -18.04552 -17.79480 -17.11556 -17.01895 -16.64272 -16.39318 -16.16121 -15.95072 -15.12177 -14.80388 -14.57698 -14.24498 -14.09066 -13.73191 -13.71410 -13.31974 -13.12422 -12.93963 -12.71015 -12.67882 -12.49674 -12.41611 -12.13644 -12.00704 -11.77790 -11.74804 -11.53744 -11.38493 -11.29486 -10.89495 -10.79338 -10.27848 -8.32556 -6.44896 1.07445 1.40510 1.45053 1.49718 1.53456 2.34386 2.94914 3.01411 3.05666 3.34506 3.58910 3.73855 3.91383 3.92854 4.02709 4.08593 4.10430 4.22919 4.37619 4.41522 4.48829 4.51332 4.65620 4.74030 4.82768 4.84698 4.84731 4.94681 4.98206 5.05835 5.14397 5.16782 5.22719 5.40430 5.53760 5.81171 5.94580 6.48956 6.63542 6.78847 7.26718 8.79426 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.030527 B = 0.003246 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.001526 B = 8623.550835 C = 9320.532936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.075 4.075 3 H 0.128 0.872 4 C 0.470 3.530 5 O -0.527 6.527 6 O -0.355 6.355 7 C 0.078 3.922 8 C 0.053 3.947 9 O -0.409 6.409 10 C 0.208 3.792 11 C -0.552 4.552 12 H 0.060 0.940 13 C 0.008 3.992 14 N -0.929 5.929 15 Si 0.982 3.018 16 H -0.266 1.266 17 H -0.274 1.274 18 H -0.265 1.265 19 C 0.094 3.906 20 H 0.071 0.929 21 C -0.148 4.148 22 C -0.151 4.151 23 C 0.038 3.962 24 O -0.383 6.383 25 H 0.090 0.910 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.110 0.890 30 H 0.082 0.918 31 H 0.056 0.944 32 H -0.008 1.008 33 H -0.011 1.011 34 H 0.271 0.729 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.110 0.890 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.479 -2.370 -21.058 24.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.094 4.094 3 H 0.146 0.854 4 C 0.314 3.686 5 O -0.416 6.416 6 O -0.271 6.271 7 C 0.005 3.995 8 C -0.024 4.024 9 O -0.329 6.329 10 C 0.134 3.866 11 C -0.589 4.589 12 H 0.079 0.921 13 C -0.191 4.191 14 N -0.568 5.568 15 Si 0.804 3.196 16 H -0.191 1.191 17 H -0.199 1.199 18 H -0.190 1.190 19 C 0.036 3.964 20 H 0.089 0.911 21 C -0.185 4.185 22 C -0.188 4.188 23 C -0.038 4.038 24 O -0.303 6.303 25 H 0.108 0.892 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.128 0.872 30 H 0.100 0.900 31 H 0.074 0.926 32 H 0.010 0.990 33 H 0.007 0.993 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.109 0.891 39 H 0.128 0.872 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 11.374 -2.513 -21.032 24.042 hybrid contribution -0.285 -0.148 0.826 0.887 sum 11.088 -2.661 -20.206 23.201 Atomic orbital electron populations 1.21702 0.90995 1.02979 1.04014 1.21015 0.99215 1.01526 0.87681 0.85430 1.23799 0.76741 0.82725 0.85336 1.90616 1.36780 1.26634 1.87614 1.86590 1.69732 1.55500 1.15281 1.23215 0.99484 0.95460 0.81384 1.22657 0.83266 1.00702 0.95768 1.87863 1.20024 1.80104 1.44916 1.19862 0.93660 0.91076 0.82042 1.21364 0.92039 1.38279 1.07233 0.92136 1.25937 1.04975 0.93972 0.94194 1.70047 1.38369 1.38070 1.10363 0.85254 0.77242 0.79007 0.78051 1.19057 1.19898 1.19013 1.22647 0.94467 0.94845 0.84415 0.91126 1.22974 0.94446 1.03274 0.97851 1.22961 0.98070 1.04039 0.93751 1.23687 0.87736 1.01166 0.91200 1.89144 1.55550 1.66543 1.19020 0.89153 0.92514 0.91796 0.90987 0.87162 0.89990 0.92553 0.99030 0.99284 0.91969 0.91200 0.90237 0.89686 0.89102 0.87195 0.91339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 9.01 71.98 0.65 -2.67 16 2 C -0.08 -1.76 2.50 -11.54 -0.03 -1.79 16 3 H 0.13 2.63 8.14 -2.39 -0.02 2.61 16 4 C 0.47 13.47 7.00 71.23 0.50 13.97 16 5 O -0.53 -16.15 14.26 21.96 0.31 -15.83 16 6 O -0.35 -11.65 10.09 -48.79 -0.49 -12.15 16 7 C 0.08 2.39 5.85 71.98 0.42 2.81 16 8 C 0.05 1.91 6.33 71.98 0.46 2.37 16 9 O -0.41 -20.13 10.30 -145.57 -1.50 -21.63 16 10 C 0.21 11.70 5.69 71.24 0.41 12.11 16 11 C -0.55 -33.07 9.43 25.60 0.24 -32.83 16 12 H 0.06 3.60 7.81 -2.91 -0.02 3.58 16 13 C 0.01 0.46 5.46 84.65 0.46 0.92 16 14 N -0.93 -55.71 13.29 21.45 0.28 -55.43 16 15 Si 0.98 44.41 29.54 68.60 2.03 46.43 16 16 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 17 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 18 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 19 C 0.09 1.99 2.39 31.10 0.07 2.07 16 20 H 0.07 1.59 8.13 -2.39 -0.02 1.57 16 21 C -0.15 -2.72 5.39 31.61 0.17 -2.55 16 22 C -0.15 -1.95 7.09 31.61 0.22 -1.72 16 23 C 0.04 0.53 7.63 72.48 0.55 1.08 16 24 O -0.38 -7.85 10.87 -148.98 -1.62 -9.47 16 25 H 0.09 1.89 7.81 -2.39 -0.02 1.87 16 26 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.06 1.70 8.11 -2.39 -0.02 1.68 16 28 H 0.07 2.29 8.13 -2.39 -0.02 2.27 16 29 H 0.11 2.67 8.13 -2.39 -0.02 2.65 16 30 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 31 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 32 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 33 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 34 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 35 H 0.07 1.30 7.87 -2.38 -0.02 1.28 16 36 H 0.08 1.61 7.44 -2.39 -0.02 1.60 16 37 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 39 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -69.34 336.62 4.14 -65.20 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: 1.00 Total: 9.11 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: 4.13 Total: -6.23 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: 0.28 Total: -55.43 kcal Atomic # 8 Polarization: -55.78 SS G_CDS: -3.30 Total: -59.08 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -69.34 4.14 -65.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923060855.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.247 kcal (2) G-P(sol) polarization free energy of solvation -69.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds