Wall clock time and date at job start Mon Mar 30 2020 05:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08992 * 109.46924 * 2 1 4 4 C 1.50702 * 109.47108 * 239.99461 * 2 1 3 5 5 O 1.20823 * 120.00162 * 240.00259 * 4 2 1 6 6 O 1.34228 * 119.99528 * 60.00396 * 4 2 1 7 7 C 1.45206 * 116.99484 * 179.97438 * 6 4 2 8 8 C 1.53006 * 109.46686 * 179.97438 * 7 6 4 9 9 O 1.42901 * 109.46804 * 65.00316 * 8 7 6 10 10 C 1.42899 * 113.99607 * 179.97438 * 9 8 7 11 11 C 1.50702 * 109.46876 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72213 * 11 10 9 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48504 * 109.47196 * 60.00645 * 15 13 11 17 17 H 1.48504 * 109.46887 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47679 * 300.00280 * 15 13 11 19 19 C 1.53000 * 109.46679 * 119.99931 * 2 1 3 20 20 H 1.09001 * 109.82700 * 305.56377 * 19 2 1 21 21 C 1.54387 * 109.82990 * 184.58876 * 19 2 1 22 22 C 1.55303 * 102.25465 * 219.12863 * 21 19 2 23 23 C 1.54953 * 100.94001 * 34.12964 * 22 21 19 24 24 O 1.43230 * 109.83496 * 66.45398 * 19 2 1 25 25 H 1.09001 * 109.46789 * 60.00725 * 1 2 3 26 26 H 1.09001 * 109.46850 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47068 * 300.00214 * 1 2 3 28 28 H 1.08997 * 109.47067 * 60.00182 * 7 6 4 29 29 H 1.08995 * 109.47255 * 299.99859 * 7 6 4 30 30 H 1.08995 * 109.47721 * 305.00019 * 8 7 6 31 31 H 1.09001 * 109.46499 * 184.99895 * 8 7 6 32 32 H 1.09004 * 109.47206 * 60.00168 * 10 9 8 33 33 H 1.08994 * 109.47548 * 299.99825 * 10 9 8 34 34 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 35 35 H 1.09001 * 110.84462 * 337.32071 * 21 19 2 36 36 H 1.08994 * 110.85008 * 100.93087 * 21 19 2 37 37 H 1.09000 * 111.12453 * 276.21523 * 22 21 19 38 38 H 1.08997 * 111.12531 * 152.04454 * 22 21 19 39 39 H 1.09002 * 110.30552 * 204.63960 * 23 22 21 40 40 H 1.08998 * 110.30615 * 82.47420 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7270 -1.6929 -1.1195 6 8 1.7081 -0.2519 -2.4495 7 6 2.2278 -0.9859 -3.5896 8 6 1.7556 -0.3195 -4.8834 9 8 2.3270 0.9866 -4.9823 10 6 1.9480 1.6989 -6.1617 11 6 2.6039 3.0557 -6.1616 12 1 3.2463 3.3450 -5.3430 13 6 2.3889 3.9254 -7.2097 14 7 1.6070 3.5730 -8.2068 15 14 3.2080 5.6042 -7.2133 16 1 4.6832 5.4353 -7.1842 17 1 2.8181 6.3426 -8.4413 18 1 2.7737 6.3696 -6.0171 19 6 2.0400 -0.7213 1.2493 20 1 1.6009 -0.2725 2.1403 21 6 3.5794 -0.6263 1.3172 22 6 3.9741 -2.0361 1.8355 23 6 2.8861 -2.9115 1.1639 24 8 1.6944 -2.1097 1.1839 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8643 -2.0130 -3.5567 29 1 3.3172 -0.9849 -3.5565 30 1 0.6686 -0.2409 -4.8760 31 1 2.0707 -0.9195 -5.7370 32 1 0.8649 1.8194 -6.1812 33 1 2.2674 1.1407 -7.0417 34 1 1.4555 4.1851 -8.9440 35 1 4.0008 -0.4444 0.3285 36 1 3.8898 0.1465 2.0204 37 1 3.9051 -2.0887 2.9220 38 1 4.9702 -2.3159 1.4928 39 1 2.7345 -3.8290 1.7326 40 1 3.1684 -3.1442 0.1371 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000923060856.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:22 Heat of formation + Delta-G solvation = -188.596838 kcal Electronic energy + Delta-G solvation = -21441.382430 eV Core-core repulsion = 18028.325865 eV Total energy + Delta-G solvation = -3413.056566 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.84629 -39.09241 -36.95656 -35.86546 -34.05468 -32.76570 -32.16902 -30.06497 -28.39672 -26.94954 -24.76350 -23.04962 -22.37101 -21.81036 -21.65910 -19.91228 -17.85560 -17.08165 -16.47142 -16.46210 -16.15913 -15.49967 -15.30706 -14.80086 -14.44285 -14.26371 -13.76739 -13.50735 -13.44864 -13.10092 -12.77758 -12.62420 -12.15244 -11.95656 -11.89029 -11.64672 -11.42817 -11.23666 -11.02178 -10.92023 -10.84013 -10.83788 -10.73163 -10.32045 -10.11202 -9.94927 -9.49461 -9.14916 -8.87631 -8.21739 -6.12581 -4.14446 2.38404 2.84054 3.31419 3.34020 3.37896 3.73206 4.29478 4.31950 4.40598 4.72306 4.75190 4.85934 4.92584 5.03752 5.15434 5.21138 5.23864 5.27939 5.41386 5.47129 5.57169 5.62888 5.67655 5.73064 5.80520 5.87469 5.89593 5.97223 6.04538 6.13149 6.15230 6.76006 6.96229 7.05091 7.39318 7.76934 7.99162 8.11981 8.52133 8.97782 9.50249 10.98962 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.029225 B = 0.003421 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.845566 B = 8183.282389 C = 8436.286317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.098 4.098 3 H 0.116 0.884 4 C 0.468 3.532 5 O -0.508 6.508 6 O -0.341 6.341 7 C 0.076 3.924 8 C 0.062 3.938 9 O -0.391 6.391 10 C 0.195 3.805 11 C -0.516 4.516 12 H 0.066 0.934 13 C 0.056 3.944 14 N -0.899 5.899 15 Si 0.909 3.091 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.097 3.903 20 H 0.092 0.908 21 C -0.150 4.150 22 C -0.150 4.150 23 C 0.054 3.946 24 O -0.372 6.372 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.007 0.993 33 H 0.006 0.994 34 H 0.265 0.735 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.441 -10.570 19.010 21.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.118 4.118 3 H 0.134 0.866 4 C 0.312 3.688 5 O -0.397 6.397 6 O -0.257 6.257 7 C 0.002 3.998 8 C -0.016 4.016 9 O -0.311 6.311 10 C 0.120 3.880 11 C -0.554 4.554 12 H 0.084 0.916 13 C -0.145 4.145 14 N -0.538 5.538 15 Si 0.736 3.264 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.200 1.200 19 C 0.039 3.961 20 H 0.110 0.890 21 C -0.188 4.188 22 C -0.188 4.188 23 C -0.022 4.022 24 O -0.292 6.292 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.025 0.975 33 H 0.024 0.976 34 H 0.074 0.926 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.487 -10.797 18.939 21.806 hybrid contribution 0.511 0.766 -0.504 1.050 sum 0.997 -10.031 18.435 21.011 Atomic orbital electron populations 1.21706 0.91488 1.03310 1.03318 1.21575 0.99248 1.00888 0.90065 0.86614 1.23487 0.77462 0.82747 0.85133 1.90545 1.36128 1.25795 1.87254 1.86599 1.69066 1.55351 1.14648 1.23166 0.99752 0.94196 0.82696 1.22320 0.97927 0.87823 0.93533 1.87912 1.71388 1.25430 1.46373 1.20228 0.95142 0.91187 0.81394 1.21014 1.29314 0.98595 1.06496 0.91576 1.24951 0.95420 0.99070 0.95035 1.69954 1.37256 1.36862 1.09725 0.86380 0.79742 0.82842 0.77415 1.20012 1.21133 1.19964 1.22589 0.94720 0.83529 0.95222 0.89037 1.23194 0.94822 0.97937 1.02849 1.23156 1.00197 0.95067 1.00358 1.23472 0.83874 0.93401 1.01432 1.88347 1.30301 1.15363 1.95145 0.90897 0.91563 0.91286 0.90581 0.90692 0.93232 0.92067 0.97506 0.97638 0.92560 0.90010 0.90300 0.91026 0.90214 0.91008 0.89758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.04 37.16 0.34 -1.14 16 2 C -0.10 -1.13 2.66 -91.77 -0.24 -1.38 16 3 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 4 C 0.47 6.96 6.50 36.01 0.23 7.19 16 5 O -0.51 -7.96 10.66 -25.76 -0.27 -8.23 16 6 O -0.34 -5.78 10.09 -42.02 -0.42 -6.20 16 7 C 0.08 1.22 5.85 37.16 0.22 1.44 16 8 C 0.06 1.15 6.33 37.16 0.24 1.38 16 9 O -0.39 -9.56 10.30 -38.80 -0.40 -9.96 16 10 C 0.19 5.36 5.69 36.01 0.20 5.56 16 11 C -0.52 -15.27 9.43 -34.44 -0.32 -15.60 16 12 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 14 N -0.90 -26.87 13.29 55.43 0.74 -26.13 16 15 Si 0.91 21.81 29.54 -169.99 -5.02 16.79 16 16 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 19 C 0.10 1.03 3.19 -26.00 -0.08 0.94 16 20 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 21 C -0.15 -1.48 6.04 -24.78 -0.15 -1.63 16 22 C -0.15 -1.38 7.16 -24.48 -0.18 -1.56 16 23 C 0.05 0.61 6.95 38.19 0.27 0.87 16 24 O -0.37 -4.72 9.85 -56.18 -0.55 -5.27 16 25 H 0.07 0.82 8.11 -51.93 -0.42 0.40 16 26 H 0.07 0.74 7.88 -51.93 -0.41 0.34 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.08 1.05 8.13 -51.93 -0.42 0.63 16 29 H 0.07 1.23 8.13 -51.93 -0.42 0.80 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.08 0.96 6.46 -51.93 -0.34 0.62 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.08 1.10 5.88 -51.93 -0.31 0.80 16 LS Contribution 329.62 15.07 4.97 4.97 Total: -1.00 -32.87 329.62 -7.06 -39.94 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -6.51 Total: -3.51 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: 0.42 Total: -2.38 kcal Atomic # 7 Polarization: -26.87 SS G_CDS: 0.74 Total: -26.13 kcal Atomic # 8 Polarization: -28.02 SS G_CDS: -1.65 Total: -29.67 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.87 -7.06 -39.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923060856.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.660 kcal (2) G-P(sol) polarization free energy of solvation -32.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds