Wall clock time and date at job start Mon Mar 30 2020 05:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08992 * 109.46924 * 2 1 4 4 C 1.50702 * 109.47108 * 239.99461 * 2 1 3 5 5 O 1.20823 * 120.00162 * 240.00259 * 4 2 1 6 6 O 1.34228 * 119.99528 * 60.00396 * 4 2 1 7 7 C 1.45206 * 116.99484 * 179.97438 * 6 4 2 8 8 C 1.53006 * 109.46686 * 179.97438 * 7 6 4 9 9 O 1.42901 * 109.46804 * 65.00316 * 8 7 6 10 10 C 1.42899 * 113.99607 * 179.97438 * 9 8 7 11 11 C 1.50702 * 109.46876 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72213 * 11 10 9 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48504 * 109.47196 * 60.00645 * 15 13 11 17 17 H 1.48504 * 109.46887 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47679 * 300.00280 * 15 13 11 19 19 C 1.53000 * 109.46679 * 119.99931 * 2 1 3 20 20 H 1.09001 * 109.82700 * 305.56377 * 19 2 1 21 21 C 1.54387 * 109.82990 * 184.58876 * 19 2 1 22 22 C 1.55303 * 102.25465 * 219.12863 * 21 19 2 23 23 C 1.54953 * 100.94001 * 34.12964 * 22 21 19 24 24 O 1.43230 * 109.83496 * 66.45398 * 19 2 1 25 25 H 1.09001 * 109.46789 * 60.00725 * 1 2 3 26 26 H 1.09001 * 109.46850 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47068 * 300.00214 * 1 2 3 28 28 H 1.08997 * 109.47067 * 60.00182 * 7 6 4 29 29 H 1.08995 * 109.47255 * 299.99859 * 7 6 4 30 30 H 1.08995 * 109.47721 * 305.00019 * 8 7 6 31 31 H 1.09001 * 109.46499 * 184.99895 * 8 7 6 32 32 H 1.09004 * 109.47206 * 60.00168 * 10 9 8 33 33 H 1.08994 * 109.47548 * 299.99825 * 10 9 8 34 34 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 35 35 H 1.09001 * 110.84462 * 337.32071 * 21 19 2 36 36 H 1.08994 * 110.85008 * 100.93087 * 21 19 2 37 37 H 1.09000 * 111.12453 * 276.21523 * 22 21 19 38 38 H 1.08997 * 111.12531 * 152.04454 * 22 21 19 39 39 H 1.09002 * 110.30552 * 204.63960 * 23 22 21 40 40 H 1.08998 * 110.30615 * 82.47420 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7270 -1.6929 -1.1195 6 8 1.7081 -0.2519 -2.4495 7 6 2.2278 -0.9859 -3.5896 8 6 1.7556 -0.3195 -4.8834 9 8 2.3270 0.9866 -4.9823 10 6 1.9480 1.6989 -6.1617 11 6 2.6039 3.0557 -6.1616 12 1 3.2463 3.3450 -5.3430 13 6 2.3889 3.9254 -7.2097 14 7 1.6070 3.5730 -8.2068 15 14 3.2080 5.6042 -7.2133 16 1 4.6832 5.4353 -7.1842 17 1 2.8181 6.3426 -8.4413 18 1 2.7737 6.3696 -6.0171 19 6 2.0400 -0.7213 1.2493 20 1 1.6009 -0.2725 2.1403 21 6 3.5794 -0.6263 1.3172 22 6 3.9741 -2.0361 1.8355 23 6 2.8861 -2.9115 1.1639 24 8 1.6944 -2.1097 1.1839 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8643 -2.0130 -3.5567 29 1 3.3172 -0.9849 -3.5565 30 1 0.6686 -0.2409 -4.8760 31 1 2.0707 -0.9195 -5.7370 32 1 0.8649 1.8194 -6.1812 33 1 2.2674 1.1407 -7.0417 34 1 1.4555 4.1851 -8.9440 35 1 4.0008 -0.4444 0.3285 36 1 3.8898 0.1465 2.0204 37 1 3.9051 -2.0887 2.9220 38 1 4.9702 -2.3159 1.4928 39 1 2.7345 -3.8290 1.7326 40 1 3.1684 -3.1442 0.1371 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000923060856.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:21 Heat of formation + Delta-G solvation = -208.982022 kcal Electronic energy + Delta-G solvation = -21442.266398 eV Core-core repulsion = 18028.325865 eV Total energy + Delta-G solvation = -3413.940534 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.91996 -40.10691 -38.67902 -37.23244 -35.04008 -34.88025 -32.96726 -31.63264 -29.26958 -28.99555 -25.79446 -24.58439 -24.07394 -23.04954 -22.48214 -20.94601 -18.90123 -18.70531 -18.15096 -17.84863 -17.10926 -17.04716 -16.54010 -16.37810 -16.22741 -15.38319 -15.17065 -14.70914 -14.37583 -14.28207 -13.87131 -13.85208 -13.62756 -13.26604 -13.08964 -12.90729 -12.76401 -12.69436 -12.49656 -12.40646 -12.04001 -11.98848 -11.82065 -11.66571 -11.64335 -11.30978 -11.09578 -10.89154 -10.37825 -10.29292 -8.33126 -6.45825 1.23477 1.40259 1.45019 1.53497 1.70234 2.34031 2.92658 3.00777 3.04240 3.43016 3.59496 3.84535 3.91537 3.99575 4.07712 4.11099 4.21776 4.34419 4.40737 4.40758 4.48546 4.64179 4.66646 4.82779 4.83464 4.86704 4.90186 4.96063 5.00135 5.09690 5.15329 5.25877 5.29407 5.52731 5.60610 5.93487 6.13263 6.47958 6.76716 6.82151 7.25804 8.78981 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.029225 B = 0.003421 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.845566 B = 8183.282389 C = 8436.286317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.099 4.099 3 H 0.130 0.870 4 C 0.460 3.540 5 O -0.519 6.519 6 O -0.361 6.361 7 C 0.081 3.919 8 C 0.054 3.946 9 O -0.408 6.408 10 C 0.208 3.792 11 C -0.552 4.552 12 H 0.061 0.939 13 C 0.007 3.993 14 N -0.930 5.930 15 Si 0.984 3.016 16 H -0.266 1.266 17 H -0.274 1.274 18 H -0.265 1.265 19 C 0.094 3.906 20 H 0.121 0.879 21 C -0.151 4.151 22 C -0.144 4.144 23 C 0.049 3.951 24 O -0.392 6.392 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.096 0.904 28 H 0.103 0.897 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.080 0.920 32 H -0.011 1.011 33 H -0.009 1.009 34 H 0.272 0.728 35 H 0.056 0.944 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.885 -9.693 20.658 22.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.118 4.118 3 H 0.148 0.852 4 C 0.305 3.695 5 O -0.408 6.408 6 O -0.278 6.278 7 C 0.007 3.993 8 C -0.022 4.022 9 O -0.329 6.329 10 C 0.133 3.867 11 C -0.590 4.590 12 H 0.079 0.921 13 C -0.191 4.191 14 N -0.569 5.569 15 Si 0.806 3.194 16 H -0.190 1.190 17 H -0.199 1.199 18 H -0.189 1.189 19 C 0.037 3.963 20 H 0.138 0.862 21 C -0.189 4.189 22 C -0.181 4.181 23 C -0.027 4.027 24 O -0.312 6.312 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.115 0.885 28 H 0.120 0.880 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.098 0.902 32 H 0.006 0.994 33 H 0.009 0.991 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.122 0.878 37 H 0.111 0.889 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.929 -9.948 20.601 22.896 hybrid contribution 0.339 0.382 -1.003 1.126 sum 1.267 -9.566 19.598 21.844 Atomic orbital electron populations 1.21685 0.90696 1.02819 1.04106 1.21786 0.99850 1.01381 0.88771 0.85196 1.24266 0.77186 0.82873 0.85209 1.90558 1.36608 1.26371 1.87265 1.86599 1.69568 1.56078 1.15564 1.23090 0.99466 0.94985 0.81741 1.22629 0.98195 0.85631 0.95795 1.87857 1.72030 1.28019 1.44944 1.19870 0.93704 0.91084 0.82012 1.21362 1.30368 1.00075 1.07179 0.92078 1.25964 0.95628 1.03394 0.94136 1.70058 1.37966 1.38583 1.10273 0.85228 0.78861 0.77218 0.78076 1.19029 1.19903 1.18922 1.22820 0.95313 0.82710 0.95479 0.86168 1.23210 0.94335 0.99127 1.02220 1.23156 0.99553 0.94053 1.01384 1.23495 0.84365 0.94413 1.00455 1.88324 1.31191 1.16489 1.95177 0.92100 0.92645 0.88486 0.87950 0.91166 0.92749 0.90215 0.99353 0.99097 0.91951 0.92475 0.87769 0.88930 0.89946 0.89566 0.92379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.04 71.98 0.65 -2.03 16 2 C -0.10 -2.16 2.66 -11.54 -0.03 -2.19 16 3 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 4 C 0.46 13.64 6.50 71.24 0.46 14.10 16 5 O -0.52 -16.34 10.66 28.68 0.31 -16.04 16 6 O -0.36 -12.34 10.09 -48.75 -0.49 -12.83 16 7 C 0.08 2.61 5.85 71.98 0.42 3.03 16 8 C 0.05 2.03 6.33 71.98 0.46 2.49 16 9 O -0.41 -20.40 10.30 -145.57 -1.50 -21.90 16 10 C 0.21 11.79 5.69 71.24 0.41 12.20 16 11 C -0.55 -33.19 9.43 25.60 0.24 -32.94 16 12 H 0.06 3.63 7.81 -2.91 -0.02 3.61 16 13 C 0.01 0.43 5.46 84.66 0.46 0.89 16 14 N -0.93 -55.84 13.29 21.45 0.28 -55.55 16 15 Si 0.98 44.24 29.54 68.60 2.03 46.27 16 16 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 17 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 18 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 19 C 0.09 1.80 3.19 31.07 0.10 1.90 16 20 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 21 C -0.15 -2.71 6.04 31.86 0.19 -2.51 16 22 C -0.14 -2.38 7.16 32.05 0.23 -2.15 16 23 C 0.05 1.04 6.95 72.65 0.51 1.55 16 24 O -0.39 -9.45 9.85 -128.95 -1.27 -10.72 16 25 H 0.06 1.34 8.11 -2.39 -0.02 1.32 16 26 H 0.05 1.20 7.88 -2.39 -0.02 1.19 16 27 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.10 2.76 8.13 -2.39 -0.02 2.74 16 29 H 0.07 2.32 8.13 -2.39 -0.02 2.30 16 30 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 32 H -0.01 -0.67 8.14 -2.38 -0.02 -0.69 16 33 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 34 H 0.27 15.11 8.31 -92.70 -0.77 14.34 16 35 H 0.06 1.31 6.46 -2.39 -0.02 1.29 16 36 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.06 1.54 5.88 -2.39 -0.01 1.53 16 Total: -1.00 -71.12 329.62 4.46 -66.66 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: 1.01 Total: 9.79 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: 4.09 Total: -5.67 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: 0.28 Total: -55.55 kcal Atomic # 8 Polarization: -58.54 SS G_CDS: -2.96 Total: -61.49 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -71.12 4.46 -66.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923060856.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.318 kcal (2) G-P(sol) polarization free energy of solvation -71.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds