Wall clock time and date at job start Mon Mar 30 2020 05:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42896 * 109.47815 * 2 1 4 4 C 1.42894 * 114.00412 * 179.97438 * 3 2 1 5 5 H 1.09001 * 115.56288 * 355.70538 * 4 3 2 6 6 C 1.53003 * 117.50045 * 210.01331 * 4 3 2 7 7 H 1.09002 * 117.51469 * 359.97438 * 6 4 3 8 8 C 1.52999 * 117.49967 * 145.02064 * 6 4 3 9 9 C 1.53006 * 117.49618 * 141.39080 * 4 3 2 10 10 H 1.09002 * 117.51681 * 214.97102 * 9 4 3 11 11 C 1.50694 * 117.50026 * 0.02562 * 9 4 3 12 12 O 1.20825 * 120.00006 * 68.62363 * 11 9 4 13 13 O 1.34226 * 120.00184 * 248.62201 * 11 9 4 14 14 C 1.45192 * 117.00152 * 180.02562 * 13 11 9 15 15 C 1.53007 * 109.47338 * 179.97438 * 14 13 11 16 16 O 1.42903 * 109.47293 * 64.99532 * 15 14 13 17 17 C 1.42900 * 114.00107 * 180.02562 * 16 15 14 18 18 C 1.50699 * 109.46844 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00516 * 359.97438 * 18 17 16 20 20 C 1.37884 * 119.99783 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99707 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99956 * 180.27458 * 20 18 17 23 23 H 1.48503 * 109.47407 * 269.72718 * 22 20 18 24 24 H 1.48505 * 109.47281 * 29.72474 * 22 20 18 25 25 H 1.48501 * 109.47274 * 149.72572 * 22 20 18 26 26 H 1.08999 * 109.46927 * 300.00090 * 1 2 3 27 27 H 1.09009 * 109.46814 * 59.99984 * 1 2 3 28 28 H 1.08995 * 109.47659 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47375 * 239.99713 * 2 1 3 30 30 H 1.09009 * 109.46814 * 120.00016 * 2 1 3 31 31 H 1.09004 * 109.46976 * 128.62170 * 8 6 4 32 32 H 1.08996 * 109.47169 * 248.62391 * 8 6 4 33 33 H 1.09006 * 109.46931 * 8.62551 * 8 6 4 34 34 H 1.08999 * 109.47774 * 59.99454 * 14 13 11 35 35 H 1.09005 * 109.47128 * 299.99159 * 14 13 11 36 36 H 1.09000 * 109.46992 * 304.99781 * 15 14 13 37 37 H 1.08993 * 109.47511 * 184.99571 * 15 14 13 38 38 H 1.09001 * 109.46580 * 60.00223 * 17 16 15 39 39 H 1.08997 * 109.46771 * 300.00114 * 17 16 15 40 40 H 0.97005 * 119.99656 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.4310 1.4599 0.0006 5 1 3.9772 0.5196 0.0746 6 6 4.0422 2.6873 0.6795 7 1 3.3580 3.4092 1.1254 8 6 5.3733 2.5007 1.4104 9 6 4.0518 2.5728 -0.8462 10 1 5.0066 2.3649 -1.3293 11 6 3.1143 3.4664 -1.6165 12 8 2.3925 4.2357 -1.0274 13 8 3.0810 3.4077 -2.9571 14 6 2.1542 4.2978 -3.6331 15 6 2.2581 4.0895 -5.1454 16 8 1.8230 2.7690 -5.4754 17 6 1.8812 2.4697 -6.8715 18 6 1.4017 1.0600 -7.1034 19 1 1.0847 0.4531 -6.2682 20 6 1.3677 0.5450 -8.3820 21 7 1.7542 1.2839 -9.3990 22 14 0.7662 -1.1998 -8.6704 23 1 1.9148 -2.1381 -8.5961 24 1 -0.2328 -1.5571 -7.6313 25 1 0.1382 -1.2914 -10.0130 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8901 31 1 6.0837 3.2539 1.0695 32 1 5.2167 2.6083 2.4837 33 1 5.7680 1.5069 1.1986 34 1 2.4012 5.3315 -3.3912 35 1 1.1375 4.0808 -3.3052 36 1 3.2936 4.2200 -5.4597 37 1 1.6287 4.8178 -5.6566 38 1 2.9090 2.5665 -7.2212 39 1 1.2441 3.1645 -7.4188 40 1 1.7307 0.9214 -10.2985 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000923444904.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:24 Heat of formation + Delta-G solvation = -160.937759 kcal Electronic energy + Delta-G solvation = -20932.813298 eV Core-core repulsion = 17520.956120 eV Total energy + Delta-G solvation = -3411.857178 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.48557 -38.73423 -37.00512 -36.20281 -35.56570 -32.75831 -31.09239 -30.21595 -28.75394 -26.92849 -24.61103 -22.95959 -22.41043 -21.95982 -21.19357 -20.09072 -18.08026 -16.93163 -16.47896 -16.40473 -15.83444 -15.59198 -15.40139 -14.81240 -14.60388 -14.21001 -13.85873 -13.60473 -13.28986 -12.91467 -12.80316 -12.59308 -12.45468 -12.36715 -11.91383 -11.76528 -11.39027 -11.35822 -11.01477 -10.89644 -10.86897 -10.72329 -10.40122 -10.30300 -10.25703 -10.02527 -9.30807 -9.11706 -8.85746 -8.19601 -6.11300 -4.12748 2.28388 2.74903 3.23311 3.30034 3.34867 3.40466 3.62658 4.33357 4.41247 4.52456 4.69054 4.76818 4.93573 4.98015 5.04398 5.08681 5.22999 5.25233 5.26596 5.30750 5.40907 5.45789 5.53570 5.63466 5.73736 5.82724 5.91381 5.96641 6.01471 6.08258 6.15238 6.72578 7.02900 7.07364 7.41417 7.78999 8.02722 8.13950 8.54798 9.00062 9.51844 11.00348 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.016768 B = 0.004073 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.432797 B = 6873.227710 C = 7809.859028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.056 3.944 3 O -0.349 6.349 4 C 0.058 3.942 5 H 0.125 0.875 6 C -0.124 4.124 7 H 0.124 0.876 8 C -0.122 4.122 9 C -0.174 4.174 10 H 0.140 0.860 11 C 0.498 3.502 12 O -0.511 6.511 13 O -0.338 6.338 14 C 0.075 3.925 15 C 0.062 3.938 16 O -0.390 6.390 17 C 0.194 3.806 18 C -0.514 4.514 19 H 0.066 0.934 20 C 0.056 3.944 21 N -0.899 5.899 22 Si 0.908 3.092 23 H -0.279 1.279 24 H -0.271 1.271 25 H -0.285 1.285 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.049 0.951 37 H 0.062 0.938 38 H 0.007 0.993 39 H 0.006 0.994 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.402 0.902 20.257 20.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.267 6.267 4 C -0.001 4.001 5 H 0.142 0.858 6 C -0.142 4.142 7 H 0.142 0.858 8 C -0.179 4.179 9 C -0.193 4.193 10 H 0.157 0.843 11 C 0.341 3.659 12 O -0.399 6.399 13 O -0.254 6.254 14 C 0.002 3.998 15 C -0.015 4.015 16 O -0.310 6.310 17 C 0.120 3.880 18 C -0.552 4.552 19 H 0.085 0.915 20 C -0.145 4.145 21 N -0.538 5.538 22 Si 0.735 3.265 23 H -0.204 1.204 24 H -0.196 1.196 25 H -0.211 1.211 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.025 0.975 39 H 0.024 0.976 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.973 1.159 20.320 20.952 hybrid contribution -0.128 -0.695 -0.741 1.024 sum 4.845 0.464 19.579 20.175 Atomic orbital electron populations 1.21749 0.93347 1.02462 1.03435 1.22622 0.96010 0.82930 1.00428 1.87959 1.17727 1.27284 1.93693 1.22926 0.83137 0.93721 1.00335 0.85806 1.22918 0.99719 1.00712 0.90871 0.85785 1.21398 0.94103 1.02210 1.00151 1.22498 1.00860 1.02433 0.93553 0.84256 1.22173 0.81214 0.81030 0.81462 1.90613 1.40883 1.38021 1.70413 1.86557 1.58980 1.59978 1.19915 1.23189 0.92917 0.91978 0.91729 1.22320 0.99333 0.88582 0.91302 1.87926 1.86471 1.27510 1.29107 1.20234 0.95833 0.96511 0.75445 1.21053 1.43441 0.97554 0.93166 0.91538 1.24949 0.95449 0.98570 0.95531 1.69965 1.47778 1.36795 0.99287 0.86330 0.78997 0.83622 0.77508 1.20450 1.19619 1.21060 0.91957 0.91363 0.90816 0.92513 0.93093 0.91375 0.91358 0.92060 0.90550 0.90560 0.93249 0.91985 0.97525 0.97623 0.92648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 10.28 37.16 0.38 -1.24 16 2 C 0.06 0.62 6.53 37.16 0.24 0.87 16 3 O -0.35 -4.90 10.01 -35.23 -0.35 -5.25 16 4 C 0.06 0.65 6.05 -26.73 -0.16 0.49 16 5 H 0.12 1.02 7.83 -51.93 -0.41 0.61 16 6 C -0.12 -1.28 5.87 -90.62 -0.53 -1.81 16 7 H 0.12 1.50 7.67 -51.93 -0.40 1.10 16 8 C -0.12 -0.83 10.19 37.16 0.38 -0.45 16 9 C -0.17 -2.18 6.02 -91.77 -0.55 -2.73 16 10 H 0.14 1.43 8.14 -51.93 -0.42 1.01 16 11 C 0.50 8.34 7.26 36.00 0.26 8.61 16 12 O -0.51 -9.49 16.00 -18.75 -0.30 -9.79 16 13 O -0.34 -6.23 10.19 -42.01 -0.43 -6.66 16 14 C 0.08 1.31 5.84 37.16 0.22 1.52 16 15 C 0.06 1.20 6.33 37.16 0.24 1.43 16 16 O -0.39 -9.80 10.30 -38.79 -0.40 -10.19 16 17 C 0.19 5.41 5.69 36.01 0.20 5.61 16 18 C -0.51 -15.35 9.43 -34.44 -0.32 -15.68 16 19 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 22 Si 0.91 21.92 29.54 -169.99 -5.02 16.90 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.34 7.90 -51.93 -0.41 -0.07 16 34 H 0.08 1.11 8.13 -51.93 -0.42 0.69 16 35 H 0.08 1.37 8.13 -51.93 -0.42 0.95 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 349.10 15.07 5.26 5.26 Total: -1.00 -34.81 349.10 -6.93 -41.74 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -6.68 Total: -3.88 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: 0.25 Total: -1.85 kcal Atomic # 7 Polarization: -27.01 SS G_CDS: 0.74 Total: -26.27 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -1.48 Total: -31.90 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.81 -6.93 -41.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923444904.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.196 kcal (2) G-P(sol) polarization free energy of solvation -34.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds