Wall clock time and date at job start Mon Mar 30 2020 05:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42896 * 109.47815 * 2 1 4 4 C 1.42894 * 114.00412 * 179.97438 * 3 2 1 5 5 H 1.09001 * 115.56288 * 355.70538 * 4 3 2 6 6 C 1.53003 * 117.50045 * 210.01331 * 4 3 2 7 7 H 1.09002 * 117.51469 * 359.97438 * 6 4 3 8 8 C 1.52999 * 117.49967 * 145.02064 * 6 4 3 9 9 C 1.53006 * 117.49618 * 141.39080 * 4 3 2 10 10 H 1.09002 * 117.51681 * 214.97102 * 9 4 3 11 11 C 1.50694 * 117.50026 * 0.02562 * 9 4 3 12 12 O 1.20825 * 120.00006 * 68.62363 * 11 9 4 13 13 O 1.34226 * 120.00184 * 248.62201 * 11 9 4 14 14 C 1.45192 * 117.00152 * 180.02562 * 13 11 9 15 15 C 1.53007 * 109.47338 * 179.97438 * 14 13 11 16 16 O 1.42903 * 109.47293 * 64.99532 * 15 14 13 17 17 C 1.42900 * 114.00107 * 180.02562 * 16 15 14 18 18 C 1.50699 * 109.46844 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00516 * 359.97438 * 18 17 16 20 20 C 1.37884 * 119.99783 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99707 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99956 * 180.27458 * 20 18 17 23 23 H 1.48503 * 109.47407 * 269.72718 * 22 20 18 24 24 H 1.48505 * 109.47281 * 29.72474 * 22 20 18 25 25 H 1.48501 * 109.47274 * 149.72572 * 22 20 18 26 26 H 1.08999 * 109.46927 * 300.00090 * 1 2 3 27 27 H 1.09009 * 109.46814 * 59.99984 * 1 2 3 28 28 H 1.08995 * 109.47659 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47375 * 239.99713 * 2 1 3 30 30 H 1.09009 * 109.46814 * 120.00016 * 2 1 3 31 31 H 1.09004 * 109.46976 * 128.62170 * 8 6 4 32 32 H 1.08996 * 109.47169 * 248.62391 * 8 6 4 33 33 H 1.09006 * 109.46931 * 8.62551 * 8 6 4 34 34 H 1.08999 * 109.47774 * 59.99454 * 14 13 11 35 35 H 1.09005 * 109.47128 * 299.99159 * 14 13 11 36 36 H 1.09000 * 109.46992 * 304.99781 * 15 14 13 37 37 H 1.08993 * 109.47511 * 184.99571 * 15 14 13 38 38 H 1.09001 * 109.46580 * 60.00223 * 17 16 15 39 39 H 1.08997 * 109.46771 * 300.00114 * 17 16 15 40 40 H 0.97005 * 119.99656 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.4310 1.4599 0.0006 5 1 3.9772 0.5196 0.0746 6 6 4.0422 2.6873 0.6795 7 1 3.3580 3.4092 1.1254 8 6 5.3733 2.5007 1.4104 9 6 4.0518 2.5728 -0.8462 10 1 5.0066 2.3649 -1.3293 11 6 3.1143 3.4664 -1.6165 12 8 2.3925 4.2357 -1.0274 13 8 3.0810 3.4077 -2.9571 14 6 2.1542 4.2978 -3.6331 15 6 2.2581 4.0895 -5.1454 16 8 1.8230 2.7690 -5.4754 17 6 1.8812 2.4697 -6.8715 18 6 1.4017 1.0600 -7.1034 19 1 1.0847 0.4531 -6.2682 20 6 1.3677 0.5450 -8.3820 21 7 1.7542 1.2839 -9.3990 22 14 0.7662 -1.1998 -8.6704 23 1 1.9148 -2.1381 -8.5961 24 1 -0.2328 -1.5571 -7.6313 25 1 0.1382 -1.2914 -10.0130 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8901 31 1 6.0837 3.2539 1.0695 32 1 5.2167 2.6083 2.4837 33 1 5.7680 1.5069 1.1986 34 1 2.4012 5.3315 -3.3912 35 1 1.1375 4.0808 -3.3052 36 1 3.2936 4.2200 -5.4597 37 1 1.6287 4.8178 -5.6566 38 1 2.9090 2.5665 -7.2212 39 1 1.2441 3.1645 -7.4188 40 1 1.7307 0.9214 -10.2985 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000923444904.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:23 Heat of formation + Delta-G solvation = -183.401046 kcal Electronic energy + Delta-G solvation = -20933.787379 eV Core-core repulsion = 17520.956120 eV Total energy + Delta-G solvation = -3412.831259 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.72818 -39.78592 -38.71407 -37.55333 -36.69060 -34.96330 -31.94109 -31.81540 -29.60557 -28.97688 -25.76601 -24.55893 -23.82254 -23.41898 -22.13979 -21.15382 -19.22008 -18.71407 -18.12144 -17.95788 -17.16163 -16.87444 -16.50732 -16.39631 -16.31792 -15.73520 -15.21573 -14.64901 -14.38543 -14.17183 -13.92874 -13.76610 -13.51043 -13.44304 -13.22271 -13.18963 -12.93215 -12.72278 -12.49607 -12.46989 -12.22003 -12.03482 -11.83927 -11.77308 -11.56272 -11.30508 -11.20438 -10.91427 -10.30366 -10.19845 -8.33592 -6.46127 1.04499 1.39486 1.42538 1.54620 1.55897 2.33680 2.39647 2.69473 3.00228 3.02596 3.53543 3.57556 3.81778 3.88708 3.99983 4.05348 4.14291 4.25416 4.31841 4.36317 4.40977 4.45239 4.47133 4.62354 4.76655 4.82289 4.82518 4.95826 4.97550 5.14812 5.16018 5.20631 5.37267 5.40035 5.52507 5.93096 6.18133 6.47387 6.70638 6.77430 7.25445 8.78752 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.016768 B = 0.004073 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.432797 B = 6873.227710 C = 7809.859028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.051 3.949 3 O -0.385 6.385 4 C 0.055 3.945 5 H 0.160 0.840 6 C -0.107 4.107 7 H 0.101 0.899 8 C -0.116 4.116 9 C -0.195 4.195 10 H 0.163 0.837 11 C 0.492 3.508 12 O -0.538 6.538 13 O -0.357 6.357 14 C 0.078 3.922 15 C 0.056 3.944 16 O -0.410 6.410 17 C 0.208 3.792 18 C -0.551 4.551 19 H 0.059 0.941 20 C 0.008 3.992 21 N -0.929 5.929 22 Si 0.984 3.016 23 H -0.266 1.266 24 H -0.266 1.266 25 H -0.273 1.273 26 H 0.064 0.936 27 H 0.039 0.961 28 H 0.096 0.904 29 H 0.053 0.947 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.108 0.892 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.083 0.917 38 H -0.010 1.010 39 H -0.008 1.008 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.272 -0.716 21.295 22.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.025 4.025 3 O -0.304 6.304 4 C -0.004 4.004 5 H 0.177 0.823 6 C -0.126 4.126 7 H 0.119 0.881 8 C -0.172 4.172 9 C -0.214 4.214 10 H 0.180 0.820 11 C 0.337 3.663 12 O -0.428 6.428 13 O -0.274 6.274 14 C 0.005 3.995 15 C -0.021 4.021 16 O -0.331 6.331 17 C 0.133 3.867 18 C -0.589 4.589 19 H 0.077 0.923 20 C -0.190 4.190 21 N -0.568 5.568 22 Si 0.806 3.194 23 H -0.191 1.191 24 H -0.190 1.190 25 H -0.198 1.198 26 H 0.083 0.917 27 H 0.058 0.942 28 H 0.115 0.885 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.125 0.875 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.101 0.899 38 H 0.008 0.992 39 H 0.010 0.990 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.855 -0.441 21.372 22.164 hybrid contribution -0.399 -0.097 -1.028 1.107 sum 5.456 -0.538 20.344 21.070 Atomic orbital electron populations 1.21788 0.93592 1.03573 1.02092 1.22805 0.95972 0.82037 1.01686 1.87921 1.19521 1.29124 1.93836 1.23373 0.82362 0.95158 0.99481 0.82269 1.22968 1.00935 0.99424 0.89249 0.88107 1.21436 0.91927 1.03567 1.00296 1.22767 1.01043 1.03043 0.94534 0.81967 1.23039 0.81374 0.81094 0.80809 1.90586 1.42296 1.39375 1.70544 1.86556 1.59164 1.60455 1.21201 1.23163 0.92459 0.93549 0.90320 1.22632 1.00148 0.86424 0.92912 1.87874 1.86962 1.30919 1.27296 1.19889 0.94272 0.95769 0.76791 1.21368 1.45099 0.98666 0.93766 0.92308 1.25953 0.94836 1.03461 0.94791 1.70062 1.47824 1.38979 0.99942 0.85180 0.78836 0.77533 0.77847 1.19075 1.19011 1.19753 0.91725 0.94210 0.88497 0.92908 0.89989 0.90758 0.90152 0.90130 0.87452 0.91740 0.92344 0.89920 0.99199 0.99027 0.91935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 10.28 71.98 0.74 -2.48 16 2 C 0.05 1.07 6.53 71.98 0.47 1.54 16 3 O -0.39 -10.69 10.01 -148.98 -1.49 -12.19 16 4 C 0.05 1.15 6.05 30.60 0.19 1.34 16 5 H 0.16 2.12 7.83 -2.39 -0.02 2.10 16 6 C -0.11 -2.06 5.87 -10.79 -0.06 -2.13 16 7 H 0.10 2.44 7.67 -2.39 -0.02 2.42 16 8 C -0.12 -1.23 10.19 71.98 0.73 -0.50 16 9 C -0.19 -4.69 6.02 -11.54 -0.07 -4.76 16 10 H 0.16 3.04 8.14 -2.39 -0.02 3.02 16 11 C 0.49 16.65 7.26 71.23 0.52 17.17 16 12 O -0.54 -20.45 16.00 21.97 0.35 -20.10 16 13 O -0.36 -13.32 10.19 -48.74 -0.50 -13.82 16 14 C 0.08 2.74 5.84 71.98 0.42 3.16 16 15 C 0.06 2.15 6.33 71.98 0.46 2.61 16 16 O -0.41 -21.12 10.30 -145.57 -1.50 -22.62 16 17 C 0.21 11.91 5.69 71.24 0.41 12.32 16 18 C -0.55 -33.53 9.43 25.60 0.24 -33.29 16 19 H 0.06 3.57 7.81 -2.91 -0.02 3.55 16 20 C 0.01 0.48 5.46 84.66 0.46 0.94 16 21 N -0.93 -55.95 13.29 21.45 0.28 -55.66 16 22 Si 0.98 44.52 29.54 68.60 2.03 46.54 16 23 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 24 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 25 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 26 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 28 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.08 0.59 7.90 -2.38 -0.02 0.57 16 34 H 0.11 3.06 8.13 -2.39 -0.02 3.04 16 35 H 0.06 2.38 8.13 -2.38 -0.02 2.36 16 36 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 38 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 39 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 40 H 0.27 15.10 8.31 -92.70 -0.77 14.33 16 Total: -1.00 -76.63 349.10 4.67 -71.96 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: 1.00 Total: 9.98 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: 4.50 Total: -4.09 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: 0.28 Total: -55.66 kcal Atomic # 8 Polarization: -65.59 SS G_CDS: -3.14 Total: -68.72 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Total: -76.63 4.67 -71.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923444904.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.444 kcal (2) G-P(sol) polarization free energy of solvation -76.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds