Wall clock time and date at job start Mon Mar 30 2020 04:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99865 * 2 1 4 4 H 1.48508 * 109.47138 * 269.99783 * 3 2 1 5 5 H 1.48504 * 109.47511 * 29.99850 * 3 2 1 6 6 H 1.48507 * 109.47179 * 149.99978 * 3 2 1 7 7 C 1.37879 * 119.99814 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99583 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00167 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47098 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47329 * 180.02562 * 10 9 7 12 12 O 1.45199 * 109.47444 * 179.97438 * 11 10 9 13 13 C 1.34229 * 117.00080 * 179.97438 * 12 11 10 14 14 O 1.20830 * 120.00181 * 0.02562 * 13 12 11 15 15 C 1.50698 * 120.00179 * 180.02562 * 13 12 11 16 16 C 1.52999 * 109.47648 * 180.02562 * 15 13 12 17 17 O 1.42903 * 109.53569 * 300.00068 * 16 15 13 18 18 C 1.53176 * 109.54361 * 60.17289 * 16 15 13 19 19 C 1.53283 * 109.06164 * 176.85759 * 18 16 15 20 20 O 1.42906 * 109.45968 * 302.44581 * 19 18 16 21 21 C 1.42907 * 114.09476 * 61.16231 * 20 19 18 22 22 C 1.53088 * 109.41256 * 298.83610 * 21 20 19 23 23 H 0.97002 * 119.99708 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.46950 * 59.99485 * 9 7 2 25 25 H 1.09005 * 109.46847 * 299.99832 * 9 7 2 26 26 H 1.09001 * 109.47507 * 59.99179 * 10 9 7 27 27 H 1.09005 * 109.47191 * 299.99691 * 10 9 7 28 28 H 1.09004 * 109.47415 * 59.99909 * 11 10 9 29 29 H 1.09001 * 109.47388 * 299.99805 * 11 10 9 30 30 H 1.09005 * 109.47006 * 60.00001 * 15 13 12 31 31 H 1.09007 * 109.47091 * 300.00409 * 15 13 12 32 32 H 0.96700 * 114.00311 * 60.00082 * 17 16 15 33 33 H 1.08994 * 109.52298 * 296.84914 * 18 16 15 34 34 H 1.08998 * 109.51787 * 57.03674 * 18 16 15 35 35 H 1.09001 * 109.45544 * 182.45198 * 19 18 16 36 36 H 1.08994 * 109.46841 * 62.45120 * 19 18 16 37 37 H 1.09002 * 109.47775 * 178.85948 * 21 20 19 38 38 H 1.08993 * 109.48865 * 58.83012 * 21 20 19 39 39 H 1.08999 * 109.52841 * 297.70348 * 22 21 20 40 40 H 1.09001 * 109.57260 * 177.54780 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6620 0.0005 11 6 1.4803 -4.9870 -0.0001 12 8 2.4239 -6.0907 -0.0007 13 6 1.9108 -7.3310 -0.0008 14 8 0.7129 -7.4894 -0.0008 15 6 2.8287 -8.5262 -0.0008 16 6 1.9955 -9.8094 -0.0016 17 8 1.1701 -9.8438 1.1644 18 6 1.1148 -9.8477 -1.2542 19 6 0.3440 -11.1724 -1.2839 20 8 1.2684 -12.2618 -1.2551 21 6 2.0862 -12.3022 -0.0839 22 6 2.9271 -11.0253 -0.0060 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5570 -0.8896 25 1 0.6241 -2.5567 0.8904 26 1 2.8720 -3.6043 0.8904 27 1 2.8719 -3.6043 -0.8895 28 1 0.8539 -5.0446 -0.8903 29 1 0.8534 -5.0451 0.8897 30 1 3.4576 -8.5014 0.8892 31 1 3.4577 -8.5013 -0.8908 32 1 0.5520 -9.1031 1.2309 33 1 0.4117 -9.0152 -1.2308 34 1 1.7416 -9.7714 -2.1426 35 1 -0.2519 -11.2253 -2.1950 36 1 -0.3128 -11.2300 -0.4160 37 1 2.7453 -13.1692 -0.1306 38 1 1.4524 -12.3746 0.7998 39 1 3.5905 -10.9728 -0.8693 40 1 3.5197 -11.0335 0.9088 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000923552721.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:30 Heat of formation + Delta-G solvation = -207.833333 kcal Electronic energy + Delta-G solvation = -21154.158264 eV Core-core repulsion = 17740.267541 eV Total energy + Delta-G solvation = -3413.890723 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.04592 -39.57721 -37.21402 -36.09579 -34.07462 -32.93799 -31.78311 -31.37431 -29.75805 -27.07573 -24.36581 -23.92370 -23.06072 -20.93212 -20.47057 -20.26758 -17.72008 -16.85952 -16.69369 -16.67605 -16.32381 -16.16258 -15.98150 -15.12020 -14.65854 -14.51383 -14.38880 -13.91261 -13.24252 -13.11370 -12.66939 -12.44803 -12.26295 -12.21562 -11.99205 -11.92180 -11.59116 -11.18373 -11.02322 -10.99873 -10.71611 -10.65818 -10.49462 -10.34970 -10.18445 -9.80253 -9.69718 -9.51896 -9.21296 -8.43056 -6.07839 -4.11129 2.10203 2.71144 3.28070 3.34447 3.37805 3.65318 3.88601 4.23854 4.36599 4.42155 4.44933 4.71731 4.87000 5.02086 5.02580 5.13038 5.26800 5.28228 5.35697 5.41098 5.45930 5.48070 5.51820 5.57075 5.70733 5.87300 5.90567 5.93197 6.40061 6.45976 6.73257 6.90791 6.96838 7.46025 7.54565 7.65024 7.74684 7.90113 8.30897 8.95059 9.53479 11.03599 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.057745 B = 0.002739 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.770322 B =10220.899058 C =10412.165665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.523 4.523 8 H 0.058 0.942 9 C 0.024 3.976 10 C -0.110 4.110 11 C 0.067 3.933 12 O -0.354 6.354 13 C 0.464 3.536 14 O -0.518 6.518 15 C -0.146 4.146 16 C 0.148 3.852 17 O -0.561 6.561 18 C -0.196 4.196 19 C 0.068 3.932 20 O -0.387 6.387 21 C 0.065 3.935 22 C -0.141 4.141 23 H 0.262 0.738 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.388 0.612 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.057 0.943 37 H 0.093 0.907 38 H 0.060 0.940 39 H 0.086 0.914 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.965 -22.944 -0.721 23.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.076 0.924 9 C -0.013 4.013 10 C -0.147 4.147 11 C -0.005 4.005 12 O -0.270 6.270 13 C 0.309 3.691 14 O -0.409 6.409 15 C -0.184 4.184 16 C 0.107 3.893 17 O -0.372 6.372 18 C -0.233 4.233 19 C -0.009 4.009 20 O -0.306 6.306 21 C -0.012 4.012 22 C -0.178 4.178 23 H 0.072 0.928 24 H 0.037 0.963 25 H 0.038 0.962 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.132 0.868 31 H 0.132 0.868 32 H 0.240 0.760 33 H 0.122 0.878 34 H 0.094 0.906 35 H 0.110 0.890 36 H 0.075 0.925 37 H 0.111 0.889 38 H 0.078 0.922 39 H 0.104 0.896 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.797 -23.478 -0.752 23.974 hybrid contribution 0.008 1.910 0.066 1.911 sum 4.805 -21.568 -0.686 22.107 Atomic orbital electron populations 1.69966 1.06101 1.26825 1.50457 1.25034 0.94891 0.99405 0.95137 0.86538 0.79806 0.83169 0.78164 1.20585 1.21151 1.19798 1.21164 0.93125 0.90664 1.51133 0.92424 1.19048 0.93810 0.90742 0.97678 1.21776 0.99971 0.90968 1.02011 1.23560 0.91175 0.83554 1.02254 1.86518 1.42804 1.15189 1.82501 1.23554 0.88454 0.85261 0.71869 1.90507 1.17239 1.86521 1.46641 1.22238 0.99005 0.90333 1.06849 1.20907 0.90000 0.92272 0.86164 1.86401 1.54541 1.53286 1.42952 1.23170 1.01428 1.00649 0.98070 1.22519 0.91045 0.85055 1.02290 1.87901 1.52013 1.48681 1.41967 1.22487 0.93281 0.96786 0.88622 1.22188 0.97829 0.94029 1.03772 0.92847 0.96252 0.96216 0.92103 0.92134 0.91384 0.91337 0.86761 0.86780 0.75961 0.87850 0.90575 0.88962 0.92487 0.88904 0.92218 0.89555 0.89802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.61 4.97 -27.89 -0.14 0.48 16 10 C -0.11 -2.21 5.53 -26.74 -0.15 -2.36 16 11 C 0.07 1.18 5.47 37.15 0.20 1.38 16 12 O -0.35 -5.50 10.22 -39.25 -0.40 -5.90 16 13 C 0.46 6.16 7.48 36.00 0.27 6.43 16 14 O -0.52 -7.64 11.48 -25.01 -0.29 -7.92 16 15 C -0.15 -1.38 5.10 -27.88 -0.14 -1.52 16 16 C 0.15 1.44 0.69 -90.44 -0.06 1.37 16 17 O -0.56 -6.39 11.91 -53.47 -0.64 -7.02 16 18 C -0.20 -1.98 4.78 -26.49 -0.13 -2.10 16 19 C 0.07 0.67 6.70 37.30 0.25 0.92 16 20 O -0.39 -4.15 10.77 -35.23 -0.38 -4.52 16 21 C 0.06 0.56 6.69 37.20 0.25 0.81 16 22 C -0.14 -1.12 5.15 -26.60 -0.14 -1.25 16 23 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 24 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 28 H 0.07 1.19 8.13 -51.93 -0.42 0.77 16 29 H 0.07 1.20 8.13 -51.93 -0.42 0.78 16 30 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.39 4.53 6.55 45.56 0.30 4.83 16 33 H 0.10 1.21 5.63 -51.93 -0.29 0.92 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.58 7.82 -51.93 -0.41 0.18 16 37 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.56 7.82 -51.93 -0.41 0.15 16 39 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 325.34 15.07 4.90 4.90 Total: -1.00 -30.91 325.34 -7.12 -38.03 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -5.84 Total: 1.16 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: -0.19 Total: -9.21 kcal Atomic # 7 Polarization: -26.60 SS G_CDS: 0.74 Total: -25.86 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -1.70 Total: -25.37 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.91 -7.12 -38.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923552721.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.802 kcal (2) G-P(sol) polarization free energy of solvation -30.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds