Wall clock time and date at job start Mon Mar 30 2020 04:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99865 * 2 1 4 4 H 1.48508 * 109.47138 * 269.99783 * 3 2 1 5 5 H 1.48504 * 109.47511 * 29.99850 * 3 2 1 6 6 H 1.48507 * 109.47179 * 149.99978 * 3 2 1 7 7 C 1.37879 * 119.99814 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99583 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00167 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47098 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47329 * 180.02562 * 10 9 7 12 12 O 1.45199 * 109.47444 * 179.97438 * 11 10 9 13 13 C 1.34229 * 117.00080 * 179.97438 * 12 11 10 14 14 O 1.20830 * 120.00181 * 0.02562 * 13 12 11 15 15 C 1.50698 * 120.00179 * 180.02562 * 13 12 11 16 16 C 1.52999 * 109.47648 * 180.02562 * 15 13 12 17 17 O 1.42903 * 109.53569 * 300.00068 * 16 15 13 18 18 C 1.53176 * 109.54361 * 60.17289 * 16 15 13 19 19 C 1.53283 * 109.06164 * 176.85759 * 18 16 15 20 20 O 1.42906 * 109.45968 * 302.44581 * 19 18 16 21 21 C 1.42907 * 114.09476 * 61.16231 * 20 19 18 22 22 C 1.53088 * 109.41256 * 298.83610 * 21 20 19 23 23 H 0.97002 * 119.99708 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.46950 * 59.99485 * 9 7 2 25 25 H 1.09005 * 109.46847 * 299.99832 * 9 7 2 26 26 H 1.09001 * 109.47507 * 59.99179 * 10 9 7 27 27 H 1.09005 * 109.47191 * 299.99691 * 10 9 7 28 28 H 1.09004 * 109.47415 * 59.99909 * 11 10 9 29 29 H 1.09001 * 109.47388 * 299.99805 * 11 10 9 30 30 H 1.09005 * 109.47006 * 60.00001 * 15 13 12 31 31 H 1.09007 * 109.47091 * 300.00409 * 15 13 12 32 32 H 0.96700 * 114.00311 * 60.00082 * 17 16 15 33 33 H 1.08994 * 109.52298 * 296.84914 * 18 16 15 34 34 H 1.08998 * 109.51787 * 57.03674 * 18 16 15 35 35 H 1.09001 * 109.45544 * 182.45198 * 19 18 16 36 36 H 1.08994 * 109.46841 * 62.45120 * 19 18 16 37 37 H 1.09002 * 109.47775 * 178.85948 * 21 20 19 38 38 H 1.08993 * 109.48865 * 58.83012 * 21 20 19 39 39 H 1.08999 * 109.52841 * 297.70348 * 22 21 20 40 40 H 1.09001 * 109.57260 * 177.54780 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6620 0.0005 11 6 1.4803 -4.9870 -0.0001 12 8 2.4239 -6.0907 -0.0007 13 6 1.9108 -7.3310 -0.0008 14 8 0.7129 -7.4894 -0.0008 15 6 2.8287 -8.5262 -0.0008 16 6 1.9955 -9.8094 -0.0016 17 8 1.1701 -9.8438 1.1644 18 6 1.1148 -9.8477 -1.2542 19 6 0.3440 -11.1724 -1.2839 20 8 1.2684 -12.2618 -1.2551 21 6 2.0862 -12.3022 -0.0839 22 6 2.9271 -11.0253 -0.0060 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5570 -0.8896 25 1 0.6241 -2.5567 0.8904 26 1 2.8720 -3.6043 0.8904 27 1 2.8719 -3.6043 -0.8895 28 1 0.8539 -5.0446 -0.8903 29 1 0.8534 -5.0451 0.8897 30 1 3.4576 -8.5014 0.8892 31 1 3.4577 -8.5013 -0.8908 32 1 0.5520 -9.1031 1.2309 33 1 0.4117 -9.0152 -1.2308 34 1 1.7416 -9.7714 -2.1426 35 1 -0.2519 -11.2253 -2.1950 36 1 -0.3128 -11.2300 -0.4160 37 1 2.7453 -13.1692 -0.1306 38 1 1.4524 -12.3746 0.7998 39 1 3.5905 -10.9728 -0.8693 40 1 3.5197 -11.0335 0.9088 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000923552721.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:29 Heat of formation + Delta-G solvation = -227.786058 kcal Electronic energy + Delta-G solvation = -21155.023479 eV Core-core repulsion = 17740.267541 eV Total energy + Delta-G solvation = -3414.755938 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.03875 -40.48811 -38.24735 -37.11584 -35.95645 -33.87982 -33.56351 -32.08462 -30.67513 -28.84736 -25.62873 -24.73344 -24.41610 -22.20313 -21.93202 -21.12509 -18.89415 -18.46321 -17.87255 -17.65821 -17.39141 -17.05996 -16.90600 -16.49837 -16.07439 -15.69628 -15.39114 -14.91765 -14.50269 -14.15788 -13.98561 -13.81809 -13.72224 -13.16888 -13.06531 -12.97501 -12.80238 -12.53252 -12.42144 -12.34310 -12.08447 -11.93831 -11.88564 -11.57743 -11.42512 -11.30336 -11.12759 -10.99904 -10.58758 -10.41841 -8.23454 -6.34992 1.05579 1.40739 1.42073 1.52930 1.60333 2.40249 2.94653 3.10641 3.12937 3.40737 3.56446 3.71314 3.95398 3.98224 4.02441 4.04481 4.27416 4.38532 4.39772 4.43252 4.58129 4.64484 4.71736 4.77765 4.77952 4.87670 4.87996 5.04686 5.04899 5.09064 5.21419 5.42779 5.52501 5.61987 5.78611 6.17486 6.23911 6.51927 6.69890 6.81210 7.34783 8.88728 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.057745 B = 0.002739 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.770322 B =10220.899058 C =10412.165665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.544 4.544 8 H 0.065 0.935 9 C 0.026 3.974 10 C -0.095 4.095 11 C 0.078 3.922 12 O -0.357 6.357 13 C 0.460 3.540 14 O -0.535 6.535 15 C -0.137 4.137 16 C 0.142 3.858 17 O -0.571 6.571 18 C -0.193 4.193 19 C 0.067 3.933 20 O -0.400 6.400 21 C 0.059 3.941 22 C -0.137 4.137 23 H 0.265 0.735 24 H -0.003 1.003 25 H -0.003 1.003 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.133 0.867 31 H 0.141 0.859 32 H 0.383 0.617 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.047 0.953 37 H 0.115 0.885 38 H 0.048 0.952 39 H 0.104 0.896 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.202 -23.584 -0.897 24.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.792 3.208 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.582 4.582 8 H 0.083 0.917 9 C -0.011 4.011 10 C -0.133 4.133 11 C 0.005 3.995 12 O -0.273 6.273 13 C 0.306 3.694 14 O -0.427 6.427 15 C -0.174 4.174 16 C 0.101 3.899 17 O -0.382 6.382 18 C -0.231 4.231 19 C -0.010 4.010 20 O -0.319 6.319 21 C -0.018 4.018 22 C -0.174 4.174 23 H 0.073 0.927 24 H 0.015 0.985 25 H 0.015 0.985 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.151 0.849 31 H 0.159 0.841 32 H 0.235 0.765 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.119 0.881 36 H 0.065 0.935 37 H 0.133 0.867 38 H 0.066 0.934 39 H 0.123 0.877 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.050 -24.148 -0.927 25.173 hybrid contribution -0.728 2.010 0.121 2.141 sum 6.322 -22.138 -0.806 23.037 Atomic orbital electron populations 1.70098 1.07878 1.27953 1.51457 1.26009 0.95787 1.03527 0.94588 0.85398 0.78661 0.78149 0.78550 1.19703 1.20830 1.18545 1.21632 0.93751 0.91920 1.50872 0.91697 1.18928 0.94261 0.92490 0.95441 1.21458 0.98738 0.90586 1.02499 1.23125 0.90872 0.83587 1.01926 1.86499 1.42119 1.15624 1.83083 1.24400 0.88960 0.85147 0.70934 1.90522 1.18378 1.86514 1.47265 1.22369 0.98393 0.87701 1.08971 1.21125 0.90096 0.93348 0.85306 1.86403 1.54750 1.53168 1.43839 1.23117 1.01305 0.99830 0.98853 1.22521 0.91041 0.85066 1.02328 1.87884 1.52338 1.48833 1.42883 1.22663 0.93317 0.98247 0.87529 1.22228 0.97477 0.92348 1.05349 0.92663 0.98502 0.98494 0.91567 0.91522 0.91777 0.91750 0.84872 0.84136 0.76477 0.89788 0.89633 0.88149 0.93464 0.86714 0.93396 0.87737 0.88371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.42 13.29 21.45 0.28 -56.14 16 2 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 3 Si 0.97 43.58 29.54 68.60 2.03 45.61 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 6 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 7 C -0.54 -30.44 9.11 25.60 0.23 -30.21 16 8 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 9 C 0.03 1.34 4.97 29.85 0.15 1.49 16 10 C -0.10 -3.83 5.53 30.59 0.17 -3.66 16 11 C 0.08 2.74 5.47 71.98 0.39 3.13 16 12 O -0.36 -10.59 10.22 -51.41 -0.53 -11.12 16 13 C 0.46 11.59 7.48 71.24 0.53 12.12 16 14 O -0.54 -15.67 11.48 27.94 0.32 -15.35 16 15 C -0.14 -2.21 5.10 29.85 0.15 -2.06 16 16 C 0.14 2.49 0.69 -10.68 -0.01 2.48 16 17 O -0.57 -12.53 11.91 -131.54 -1.57 -14.10 16 18 C -0.19 -3.69 4.78 30.75 0.15 -3.55 16 19 C 0.07 1.29 6.70 72.08 0.48 1.77 16 20 O -0.40 -8.01 10.77 -148.98 -1.60 -9.62 16 21 C 0.06 0.90 6.69 72.01 0.48 1.38 16 22 C -0.14 -1.77 5.15 30.68 0.16 -1.61 16 23 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 24 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 25 H 0.00 -0.19 8.14 -2.38 -0.02 -0.20 16 26 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 27 H 0.07 2.58 8.14 -2.38 -0.02 2.56 16 28 H 0.06 2.27 8.13 -2.39 -0.02 2.25 16 29 H 0.06 2.28 8.13 -2.39 -0.02 2.27 16 30 H 0.13 1.73 8.14 -2.38 -0.02 1.71 16 31 H 0.14 1.58 8.14 -2.38 -0.02 1.56 16 32 H 0.38 8.98 6.55 -74.06 -0.49 8.49 16 33 H 0.08 1.96 5.63 -2.39 -0.01 1.94 16 34 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.05 0.98 7.82 -2.39 -0.02 0.96 16 37 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.05 0.84 7.82 -2.39 -0.02 0.82 16 39 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -66.52 325.34 2.83 -63.69 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 0.54 Total: 15.32 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: 3.35 Total: -18.30 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: 0.28 Total: -56.14 kcal Atomic # 8 Polarization: -46.81 SS G_CDS: -3.38 Total: -50.18 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -66.52 2.83 -63.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923552721.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.095 kcal (2) G-P(sol) polarization free energy of solvation -66.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds