Wall clock time and date at job start Mon Mar 30 2020 05:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81405 * 102.99706 * 2 1 4 4 H 1.08992 * 109.47149 * 55.00303 * 3 2 1 5 5 C 1.52997 * 109.47367 * 294.99750 * 3 2 1 6 6 C 1.50706 * 109.46486 * 175.00162 * 3 2 1 7 7 O 1.21277 * 120.00168 * 24.99934 * 6 3 2 8 8 N 1.34780 * 119.99683 * 204.99655 * 6 3 2 9 9 C 1.47027 * 125.64535 * 359.69514 * 8 6 3 10 10 C 1.54333 * 107.25986 * 178.84696 * 9 8 6 11 11 C 1.55158 * 103.02422 * 338.13850 * 10 9 8 12 12 H 1.08997 * 111.00499 * 277.23357 * 11 10 9 13 13 C 1.53001 * 111.00242 * 153.38032 * 11 10 9 14 14 N 1.46505 * 109.46788 * 72.80735 * 13 11 10 15 15 C 1.36940 * 119.99440 * 179.97438 * 14 13 11 16 16 H 1.08002 * 120.00281 * 0.02562 * 15 14 13 17 17 C 1.38810 * 119.99663 * 179.97438 * 15 14 13 18 18 N 1.31621 * 120.00242 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00142 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47129 * 90.00311 * 19 17 15 21 21 H 1.48497 * 109.47232 * 210.00647 * 19 17 15 22 22 H 1.48503 * 109.46980 * 330.00103 * 19 17 15 23 23 C 1.47425 * 125.64951 * 179.97438 * 8 6 3 24 24 H 1.09001 * 109.47190 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47089 * 299.99939 * 1 2 3 26 26 H 1.09004 * 109.47568 * 59.99949 * 1 2 3 27 27 H 1.08990 * 109.47201 * 180.02562 * 5 3 2 28 28 H 1.09004 * 109.47460 * 300.00770 * 5 3 2 29 29 H 1.09008 * 109.47035 * 59.99870 * 5 3 2 30 30 H 1.08991 * 109.88302 * 298.39070 * 9 8 6 31 31 H 1.09001 * 109.88243 * 59.56412 * 9 8 6 32 32 H 1.09004 * 110.85016 * 219.66949 * 10 9 8 33 33 H 1.09003 * 110.66885 * 96.52586 * 10 9 8 34 34 H 1.08998 * 109.47351 * 192.80466 * 13 11 10 35 35 H 1.09004 * 109.47251 * 312.80916 * 13 11 10 36 36 H 0.96995 * 120.00380 * 359.97438 * 14 13 11 37 37 H 0.96995 * 120.00387 * 179.97438 * 18 17 15 38 38 H 1.08996 * 110.36570 * 322.93209 * 23 8 6 39 39 H 1.08997 * 110.36561 * 85.25872 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.7294 2.2541 0.8418 5 6 1.7428 2.4016 -1.3073 6 6 3.7142 1.9386 0.1238 7 8 4.4583 1.0531 -0.2409 8 7 4.2216 3.0756 0.6398 9 6 3.4381 4.2263 1.1128 10 6 4.4389 5.2754 1.6415 11 6 5.7020 4.4291 1.9508 12 1 5.6249 3.9554 2.9293 13 6 6.9696 5.2804 1.8543 14 7 7.0399 6.1838 3.0056 15 6 8.0950 7.0470 3.1351 16 1 8.8752 7.0621 2.3884 17 6 8.1613 7.9033 4.2255 18 7 7.2103 7.8853 5.1353 19 14 9.6003 9.0813 4.4020 20 1 9.2748 10.3645 3.7292 21 1 9.8627 9.3301 5.8422 22 1 10.8074 8.4857 3.7747 23 6 5.6544 3.3737 0.8181 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.9883 3.4635 -1.3075 28 1 2.2353 1.9150 -2.1492 29 1 0.6634 2.2779 -1.3970 30 1 2.8599 4.6448 0.2891 31 1 2.7708 3.9152 1.9165 32 1 4.0613 5.7498 2.5473 33 1 4.6528 6.0225 0.8772 34 1 7.8445 4.6303 1.8488 35 1 6.9456 5.8651 0.9346 36 1 6.3390 6.1705 3.6760 37 1 7.2568 8.4834 5.8975 38 1 6.1949 2.4748 1.1143 39 1 6.0736 3.7842 -0.1005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001774056901.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:29 Heat of formation + Delta-G solvation = -47.107158 kcal Electronic energy + Delta-G solvation = -18792.460824 eV Core-core repulsion = 15860.585333 eV Total energy + Delta-G solvation = -2931.875491 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.27353 -38.93347 -36.46840 -34.66111 -33.60121 -31.72963 -30.31206 -29.61975 -27.36470 -25.75659 -24.19464 -23.80257 -21.42370 -20.47974 -19.15531 -18.46682 -17.85483 -17.14098 -16.56552 -16.08960 -15.98505 -15.40205 -15.21445 -14.95105 -14.83434 -14.41487 -14.28791 -14.04499 -13.88964 -13.73412 -13.26887 -13.01603 -12.99145 -12.91830 -12.76329 -12.64248 -12.22671 -12.12102 -11.79747 -11.69137 -11.62976 -11.03959 -10.92497 -10.82712 -9.76857 -8.99058 -8.74869 -7.94743 -5.23102 0.41673 1.44235 1.48960 1.49972 1.58429 1.62765 1.88708 2.56725 3.22537 3.39360 3.60139 3.61310 3.77468 3.87378 3.93336 4.24349 4.27348 4.35674 4.38248 4.42196 4.52107 4.58937 4.62392 4.65062 4.76655 4.80724 4.92473 4.99073 5.04635 5.11591 5.20623 5.23924 5.38941 5.51096 6.27689 6.36364 6.94968 7.34951 8.09452 8.33826 9.28619 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.051201 B = 0.003077 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.737724 B = 9096.868179 C = 9260.445774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 S -0.273 6.273 3 C -0.072 4.072 4 H 0.129 0.871 5 C -0.137 4.137 6 C 0.541 3.459 7 O -0.571 6.571 8 N -0.611 5.611 9 C 0.101 3.899 10 C -0.116 4.116 11 C -0.097 4.097 12 H 0.075 0.925 13 C 0.165 3.835 14 N -0.742 5.742 15 C -0.246 4.246 16 H 0.074 0.926 17 C -0.073 4.073 18 N -0.967 5.967 19 Si 0.971 3.029 20 H -0.285 1.285 21 H -0.296 1.296 22 H -0.272 1.272 23 C 0.120 3.880 24 H 0.113 0.887 25 H 0.090 0.910 26 H 0.095 0.905 27 H 0.084 0.916 28 H 0.059 0.941 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.017 0.983 35 H 0.030 0.970 36 H 0.376 0.624 37 H 0.252 0.748 38 H 0.065 0.935 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.540 -10.378 -11.914 23.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 S -0.048 6.048 3 C -0.203 4.203 4 H 0.147 0.853 5 C -0.196 4.196 6 C 0.329 3.671 7 O -0.450 6.450 8 N -0.344 5.344 9 C -0.021 4.021 10 C -0.154 4.154 11 C -0.116 4.116 12 H 0.093 0.907 13 C 0.038 3.962 14 N -0.385 5.385 15 C -0.377 4.377 16 H 0.092 0.908 17 C -0.265 4.265 18 N -0.618 5.618 19 Si 0.801 3.199 20 H -0.212 1.212 21 H -0.222 1.222 22 H -0.197 1.197 23 C -0.004 4.004 24 H 0.131 0.869 25 H 0.109 0.891 26 H 0.114 0.886 27 H 0.102 0.898 28 H 0.078 0.922 29 H 0.114 0.886 30 H 0.117 0.883 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.035 0.965 35 H 0.048 0.952 36 H 0.208 0.792 37 H 0.060 0.940 38 H 0.083 0.917 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.354 -11.722 -12.196 23.529 hybrid contribution 0.100 1.626 0.753 1.795 sum -16.254 -10.096 -11.442 22.295 Atomic orbital electron populations 1.23582 0.90753 1.07789 1.06443 1.87741 1.10343 1.08563 1.98106 1.23251 0.94344 0.97129 1.05610 0.85269 1.21994 1.03206 1.01475 0.92890 1.19920 0.90148 0.80380 0.76658 1.90720 1.61795 1.41911 1.50592 1.48495 1.08239 1.16410 1.61258 1.22342 0.94380 0.84966 1.00377 1.22606 0.93707 0.96882 1.02235 1.22341 0.95723 0.95425 0.98156 0.90692 1.20651 0.94601 0.90812 0.90150 1.42475 1.26608 1.43500 1.25872 1.19612 1.00725 1.12123 1.05283 0.90789 1.25522 1.01200 1.02339 0.97485 1.69795 1.35801 1.42432 1.13758 0.85170 0.79318 0.79074 0.76377 1.21230 1.22248 1.19715 1.22106 0.81808 0.97988 0.98466 0.86873 0.89078 0.88641 0.89755 0.92196 0.88611 0.88314 0.89492 0.89896 0.90209 0.96511 0.95228 0.79153 0.93966 0.91683 0.90515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.20 10.45 113.37 1.18 -0.02 16 2 S -0.27 -5.84 21.10 -56.49 -1.19 -7.04 16 3 C -0.07 -1.33 2.68 29.85 0.08 -1.25 16 4 H 0.13 1.76 7.25 -2.39 -0.02 1.75 16 5 C -0.14 -1.80 9.08 71.98 0.65 -1.14 16 6 C 0.54 14.60 6.97 87.66 0.61 15.21 16 7 O -0.57 -20.69 16.39 -3.02 -0.05 -20.74 16 8 N -0.61 -14.97 3.33 -811.82 -2.70 -17.67 16 9 C 0.10 1.84 6.24 86.73 0.54 2.38 16 10 C -0.12 -2.85 6.37 31.79 0.20 -2.65 16 11 C -0.10 -2.91 3.05 -9.41 -0.03 -2.94 16 12 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 13 C 0.16 6.29 5.71 86.38 0.49 6.78 16 14 N -0.74 -36.42 5.55 -343.43 -1.91 -38.33 16 15 C -0.25 -13.49 9.99 84.03 0.84 -12.65 16 16 H 0.07 3.93 7.83 -2.91 -0.02 3.90 16 17 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 18 N -0.97 -57.93 13.06 21.65 0.28 -57.65 16 19 Si 0.97 45.52 29.55 68.60 2.03 47.55 16 20 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 21 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 22 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 23 C 0.12 3.33 6.37 86.85 0.55 3.88 16 24 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.09 0.66 7.14 -2.39 -0.02 0.65 16 27 H 0.08 0.90 7.27 -2.39 -0.02 0.89 16 28 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 29 H 0.10 0.76 6.92 -2.38 -0.02 0.75 16 30 H 0.10 1.27 7.27 -2.39 -0.02 1.25 16 31 H 0.09 1.32 7.79 -2.39 -0.02 1.30 16 32 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.08 1.98 7.91 -2.39 -0.02 1.96 16 34 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.03 1.11 7.97 -2.38 -0.02 1.09 16 36 H 0.38 19.41 7.67 -92.71 -0.71 18.70 16 37 H 0.25 14.62 8.31 -92.71 -0.77 13.84 16 38 H 0.06 2.00 8.04 -2.39 -0.02 1.98 16 39 H 0.08 2.06 8.03 -2.39 -0.02 2.04 16 Total: -1.00 -71.48 330.97 2.38 -69.10 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: 0.32 Total: 20.81 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: 5.60 Total: 3.95 kcal Atomic # 7 Polarization: -109.31 SS G_CDS: -4.32 Total: -113.64 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.05 Total: -20.74 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Atomic # 16 Polarization: -5.84 SS G_CDS: -1.19 Total: -7.04 kcal Total: -71.48 2.38 -69.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001774056901.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.993 kcal (2) G-P(sol) polarization free energy of solvation -71.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds