Wall clock time and date at job start Mon Mar 30 2020 05:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46901 * 109.47055 * 2 1 4 4 C 1.46898 * 111.00530 * 291.68358 * 3 2 1 5 5 C 1.50702 * 109.46494 * 74.93457 * 4 3 2 6 6 H 1.08000 * 120.00519 * 4.41167 * 5 4 3 7 7 C 1.37885 * 119.99350 * 184.41737 * 5 4 3 8 8 N 1.31512 * 120.00381 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99553 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47016 * 89.99827 * 9 7 5 11 11 H 1.48500 * 109.47230 * 210.00022 * 9 7 5 12 12 H 1.48501 * 109.47443 * 330.00166 * 9 7 5 13 13 C 1.46903 * 110.99623 * 167.73166 * 3 2 1 14 14 C 1.50700 * 109.47288 * 298.93255 * 13 3 2 15 15 C 1.37997 * 120.07677 * 268.00567 * 14 13 3 16 16 C 1.38319 * 120.14389 * 180.30246 * 15 14 13 17 17 C 1.38364 * 120.28529 * 359.71031 * 16 15 14 18 18 C 1.37957 * 120.14463 * 359.97438 * 17 16 15 19 19 C 1.39521 * 120.06941 * 87.72435 * 14 13 3 20 20 C 1.43200 * 120.14080 * 359.97438 * 19 14 13 21 21 C 3.14566 * 138.08858 * 187.49535 * 2 1 3 22 22 C 4.03167 * 124.98192 * 206.04205 * 2 1 3 23 23 N 1.46893 * 109.47498 * 317.49864 * 22 21 20 24 24 H 1.09004 * 109.46838 * 67.68080 * 1 2 3 25 25 H 1.09002 * 109.46920 * 187.67931 * 1 2 3 26 26 H 1.08997 * 109.47302 * 307.68434 * 1 2 3 27 27 H 1.09002 * 109.47275 * 240.00475 * 2 1 3 28 28 H 1.08998 * 109.47445 * 120.00669 * 2 1 3 29 29 H 1.08994 * 109.47409 * 194.93133 * 4 3 2 30 30 H 1.08997 * 109.47040 * 314.93789 * 4 3 2 31 31 H 0.96997 * 119.99811 * 180.02562 * 8 7 5 32 32 H 1.09007 * 109.46996 * 178.93905 * 13 3 2 33 33 H 1.08995 * 109.47668 * 58.93824 * 13 3 2 34 34 H 1.07999 * 119.92579 * 359.97438 * 15 14 13 35 35 H 1.07994 * 119.86151 * 179.74051 * 16 15 14 36 36 H 1.07999 * 119.93039 * 180.02562 * 17 16 15 37 37 H 1.07997 * 120.07177 * 180.02562 * 18 17 16 38 38 H 1.09003 * 109.47289 * 77.50492 * 22 21 20 39 39 H 1.09005 * 109.47002 * 197.49938 * 22 21 20 40 40 H 1.00903 * 111.00162 * 180.02562 * 23 22 21 41 41 H 1.00905 * 111.00269 * 303.95729 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7174 2.0503 -1.2743 5 6 0.2510 2.3940 -1.3260 6 1 -0.3778 2.2083 -0.4679 7 6 -0.2878 2.9456 -2.4691 8 7 0.4780 3.1721 -3.5140 9 14 -2.1056 3.3709 -2.5336 10 1 -2.3044 4.7660 -2.0652 11 1 -2.5947 3.2430 -3.9298 12 1 -2.8628 2.4418 -1.6568 13 6 3.4586 1.4346 0.2914 14 6 3.7146 0.8543 1.6585 15 6 3.7373 1.6774 2.7659 16 6 3.9784 1.1472 4.0205 17 6 4.1922 -0.2111 4.1748 18 6 4.1656 -1.0457 3.0766 19 6 3.9233 -0.5170 1.8080 20 6 3.8945 -1.3777 0.6638 21 6 3.8709 -2.0833 -0.2741 22 6 3.8414 -2.9679 -1.4502 23 7 2.7862 -3.9754 -1.2789 24 1 -0.3633 0.3903 -0.9507 25 1 -0.3633 -1.0185 0.1373 26 1 -0.3634 0.6282 0.8132 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 2.3076 2.9630 -1.3566 30 1 1.9635 1.3828 -2.1000 31 1 0.0990 3.5605 -4.3180 32 1 3.7989 2.4699 0.2667 33 1 4.0010 0.8559 -0.4562 34 1 3.5718 2.7385 2.6521 35 1 3.9993 1.7961 4.8836 36 1 4.3794 -0.6190 5.1571 37 1 4.3322 -2.1058 3.1984 38 1 3.6386 -2.3776 -2.3439 39 1 4.8055 -3.4657 -1.5547 40 1 2.7460 -4.5957 -2.0738 41 1 2.9162 -4.4932 -0.4227 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042451116.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:57 Heat of formation + Delta-G solvation = 83.595396 kcal Electronic energy + Delta-G solvation = -20718.121155 eV Core-core repulsion = 17792.302495 eV Total energy + Delta-G solvation = -2925.818660 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.54355 -36.66425 -35.55340 -33.17098 -32.54271 -31.54098 -30.03375 -29.32468 -27.18427 -25.57036 -24.48242 -22.72865 -22.11029 -21.25890 -19.59968 -17.87586 -16.56820 -16.26800 -15.41465 -15.27400 -15.10299 -14.87284 -14.50739 -14.29207 -13.63921 -13.58147 -13.42038 -12.93359 -12.65827 -12.59538 -12.14726 -11.73945 -11.33721 -11.21610 -11.10099 -11.00697 -10.81384 -10.57608 -10.48686 -10.34930 -10.07609 -9.86238 -9.33345 -9.00611 -8.87583 -8.65031 -8.32899 -8.20752 -7.13910 -5.95220 -3.92310 1.07444 1.53858 2.78476 3.06059 3.36537 3.42451 3.46807 4.02076 4.20661 4.49392 4.72013 5.00125 5.03215 5.12896 5.23458 5.28777 5.37455 5.39144 5.51789 5.65905 5.68460 5.95033 6.04679 6.18211 6.21691 6.30185 6.40884 6.52101 6.57464 6.61436 6.80726 6.82937 6.90331 7.07796 7.09165 7.27561 7.27724 7.44645 7.56305 7.73113 7.91832 8.19434 8.30252 8.63386 9.13041 9.67699 11.15486 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.014952 B = 0.005817 C = 0.004671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.163864 B = 4811.998795 C = 5992.611480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.067 3.933 3 N -0.529 5.529 4 C 0.193 3.807 5 C -0.497 4.497 6 H 0.073 0.927 7 C 0.051 3.949 8 N -0.901 5.901 9 Si 0.893 3.107 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.273 1.273 13 C 0.087 3.913 14 C -0.038 4.038 15 C -0.100 4.100 16 C -0.113 4.113 17 C -0.129 4.129 18 C -0.101 4.101 19 C 0.015 3.985 20 C -0.114 4.114 21 C -0.167 4.167 22 C 0.180 3.820 23 N -0.843 5.843 24 H 0.090 0.910 25 H 0.028 0.972 26 H 0.049 0.951 27 H 0.022 0.978 28 H 0.056 0.944 29 H 0.023 0.977 30 H -0.004 1.004 31 H 0.259 0.741 32 H 0.078 0.922 33 H 0.031 0.969 34 H 0.129 0.871 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.097 0.903 39 H 0.049 0.951 40 H 0.348 0.652 41 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.216 -10.811 10.243 17.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.061 4.061 3 N -0.254 5.254 4 C 0.068 3.932 5 C -0.535 4.535 6 H 0.091 0.909 7 C -0.149 4.149 8 N -0.541 5.541 9 Si 0.722 3.278 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.197 1.197 13 C -0.041 4.041 14 C -0.039 4.039 15 C -0.119 4.119 16 C -0.131 4.131 17 C -0.148 4.148 18 C -0.119 4.119 19 C 0.015 3.985 20 C -0.115 4.115 21 C -0.167 4.167 22 C 0.051 3.949 23 N -0.373 5.373 24 H 0.109 0.891 25 H 0.047 0.953 26 H 0.068 0.932 27 H 0.040 0.960 28 H 0.074 0.926 29 H 0.041 0.959 30 H 0.013 0.987 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.049 0.951 34 H 0.147 0.853 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.115 0.885 39 H 0.067 0.933 40 H 0.162 0.838 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 8.453 -9.868 10.392 16.638 hybrid contribution 0.227 -0.820 -0.843 1.198 sum 8.680 -10.688 9.549 16.756 Atomic orbital electron populations 1.22093 0.95330 0.98415 1.04611 1.22082 0.96348 0.89093 0.98558 1.62294 1.09707 1.15835 1.37544 1.19765 0.97187 0.93100 0.83164 1.21357 0.93831 1.39161 0.99200 0.90913 1.24994 0.97959 0.96197 0.95748 1.69964 1.35395 1.44866 1.03923 0.86562 0.85409 0.78833 0.77041 1.20749 1.21444 1.19742 1.21057 0.92032 0.99947 0.91017 1.20107 0.95520 0.91637 0.96589 1.21007 0.99016 1.00304 0.91551 1.21221 0.99339 0.95229 0.97299 1.20955 1.01895 0.93739 0.98181 1.21071 0.99958 0.99580 0.91326 1.15850 1.02767 0.90750 0.89180 1.19013 1.00784 0.96905 0.94837 1.21887 1.00829 0.98566 0.95465 1.18593 0.92993 0.91146 0.92216 1.58553 1.50093 1.20675 1.08017 0.89144 0.95331 0.93162 0.96011 0.92590 0.95897 0.98660 0.93105 0.90335 0.95069 0.85273 0.85999 0.86031 0.86169 0.88454 0.93342 0.83837 0.84483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 8.49 37.16 0.32 -2.93 16 2 C 0.07 1.46 4.19 -3.82 -0.02 1.44 16 3 N -0.53 -12.03 4.54 -237.52 -1.08 -13.11 16 4 C 0.19 5.14 4.74 -4.98 -0.02 5.11 16 5 C -0.50 -13.98 6.68 -34.44 -0.23 -14.21 16 6 H 0.07 2.03 5.80 -52.49 -0.30 1.73 16 7 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 8 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 9 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 13 C 0.09 1.71 4.90 -4.97 -0.02 1.68 16 14 C -0.04 -0.64 4.86 -104.23 -0.51 -1.15 16 15 C -0.10 -1.48 9.68 -39.64 -0.38 -1.86 16 16 C -0.11 -1.39 10.04 -39.50 -0.40 -1.79 16 17 C -0.13 -1.53 10.03 -39.64 -0.40 -1.93 16 18 C -0.10 -1.36 9.75 -39.19 -0.38 -1.74 16 19 C 0.02 0.24 4.62 -107.00 -0.49 -0.25 16 20 C -0.11 -1.90 9.17 -38.84 -0.36 -2.26 16 21 C -0.17 -2.60 12.49 -37.12 -0.46 -3.07 16 22 C 0.18 2.19 7.26 -6.62 -0.05 2.14 16 23 N -0.84 -9.34 9.60 -12.90 -0.12 -9.46 16 24 H 0.09 2.23 5.60 -51.93 -0.29 1.94 16 25 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.05 1.11 7.64 -51.93 -0.40 0.71 16 27 H 0.02 0.50 6.86 -51.93 -0.36 0.14 16 28 H 0.06 1.16 4.43 -51.93 -0.23 0.93 16 29 H 0.02 0.64 7.83 -51.93 -0.41 0.24 16 30 H 0.00 -0.13 7.85 -51.93 -0.41 -0.54 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.08 1.47 7.89 -51.93 -0.41 1.06 16 33 H 0.03 0.63 7.17 -51.93 -0.37 0.26 16 34 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 35 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 36 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 38 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.35 2.89 9.08 -39.29 -0.36 2.54 16 41 H 0.34 3.34 8.97 -39.29 -0.35 2.99 16 LS Contribution 334.74 15.07 5.04 5.04 Total: -1.00 -31.88 334.74 -9.93 -41.81 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -5.98 Total: 4.52 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: -3.50 Total: -19.43 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: -0.47 Total: -48.85 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.88 -9.93 -41.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042451116.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.404 kcal (2) G-P(sol) polarization free energy of solvation -31.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds