Wall clock time and date at job start Mon Mar 30 2020 05:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46901 * 109.47055 * 2 1 4 4 C 1.46898 * 111.00530 * 291.68358 * 3 2 1 5 5 C 1.50702 * 109.46494 * 74.93457 * 4 3 2 6 6 H 1.08000 * 120.00519 * 4.41167 * 5 4 3 7 7 C 1.37885 * 119.99350 * 184.41737 * 5 4 3 8 8 N 1.31512 * 120.00381 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99553 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47016 * 89.99827 * 9 7 5 11 11 H 1.48500 * 109.47230 * 210.00022 * 9 7 5 12 12 H 1.48501 * 109.47443 * 330.00166 * 9 7 5 13 13 C 1.46903 * 110.99623 * 167.73166 * 3 2 1 14 14 C 1.50700 * 109.47288 * 298.93255 * 13 3 2 15 15 C 1.37997 * 120.07677 * 268.00567 * 14 13 3 16 16 C 1.38319 * 120.14389 * 180.30246 * 15 14 13 17 17 C 1.38364 * 120.28529 * 359.71031 * 16 15 14 18 18 C 1.37957 * 120.14463 * 359.97438 * 17 16 15 19 19 C 1.39521 * 120.06941 * 87.72435 * 14 13 3 20 20 C 1.43200 * 120.14080 * 359.97438 * 19 14 13 21 21 C 3.14566 * 138.08858 * 187.49535 * 2 1 3 22 22 C 4.03167 * 124.98192 * 206.04205 * 2 1 3 23 23 N 1.46893 * 109.47498 * 317.49864 * 22 21 20 24 24 H 1.09004 * 109.46838 * 67.68080 * 1 2 3 25 25 H 1.09002 * 109.46920 * 187.67931 * 1 2 3 26 26 H 1.08997 * 109.47302 * 307.68434 * 1 2 3 27 27 H 1.09002 * 109.47275 * 240.00475 * 2 1 3 28 28 H 1.08998 * 109.47445 * 120.00669 * 2 1 3 29 29 H 1.08994 * 109.47409 * 194.93133 * 4 3 2 30 30 H 1.08997 * 109.47040 * 314.93789 * 4 3 2 31 31 H 0.96997 * 119.99811 * 180.02562 * 8 7 5 32 32 H 1.09007 * 109.46996 * 178.93905 * 13 3 2 33 33 H 1.08995 * 109.47668 * 58.93824 * 13 3 2 34 34 H 1.07999 * 119.92579 * 359.97438 * 15 14 13 35 35 H 1.07994 * 119.86151 * 179.74051 * 16 15 14 36 36 H 1.07999 * 119.93039 * 180.02562 * 17 16 15 37 37 H 1.07997 * 120.07177 * 180.02562 * 18 17 16 38 38 H 1.09003 * 109.47289 * 77.50492 * 22 21 20 39 39 H 1.09005 * 109.47002 * 197.49938 * 22 21 20 40 40 H 1.00903 * 111.00162 * 180.02562 * 23 22 21 41 41 H 1.00905 * 111.00269 * 303.95729 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7174 2.0503 -1.2743 5 6 0.2510 2.3940 -1.3260 6 1 -0.3778 2.2083 -0.4679 7 6 -0.2878 2.9456 -2.4691 8 7 0.4780 3.1721 -3.5140 9 14 -2.1056 3.3709 -2.5336 10 1 -2.3044 4.7660 -2.0652 11 1 -2.5947 3.2430 -3.9298 12 1 -2.8628 2.4418 -1.6568 13 6 3.4586 1.4346 0.2914 14 6 3.7146 0.8543 1.6585 15 6 3.7373 1.6774 2.7659 16 6 3.9784 1.1472 4.0205 17 6 4.1922 -0.2111 4.1748 18 6 4.1656 -1.0457 3.0766 19 6 3.9233 -0.5170 1.8080 20 6 3.8945 -1.3777 0.6638 21 6 3.8709 -2.0833 -0.2741 22 6 3.8414 -2.9679 -1.4502 23 7 2.7862 -3.9754 -1.2789 24 1 -0.3633 0.3903 -0.9507 25 1 -0.3633 -1.0185 0.1373 26 1 -0.3634 0.6282 0.8132 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 2.3076 2.9630 -1.3566 30 1 1.9635 1.3828 -2.1000 31 1 0.0990 3.5605 -4.3180 32 1 3.7989 2.4699 0.2667 33 1 4.0010 0.8559 -0.4562 34 1 3.5718 2.7385 2.6521 35 1 3.9993 1.7961 4.8836 36 1 4.3794 -0.6190 5.1571 37 1 4.3322 -2.1058 3.1984 38 1 3.6386 -2.3776 -2.3439 39 1 4.8055 -3.4657 -1.5547 40 1 2.7460 -4.5957 -2.0738 41 1 2.9162 -4.4932 -0.4227 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042451116.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:57 Heat of formation + Delta-G solvation = 62.385756 kcal Electronic energy + Delta-G solvation = -20719.040874 eV Core-core repulsion = 17792.302495 eV Total energy + Delta-G solvation = -2926.738379 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.158 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.76243 -38.33134 -36.59146 -34.82979 -34.02479 -33.02912 -31.22931 -30.91370 -29.13970 -26.71043 -25.97309 -24.33003 -23.59264 -22.63860 -21.31771 -19.00337 -18.49717 -17.40358 -16.89258 -16.69790 -16.42697 -16.25815 -15.84246 -15.58159 -15.29116 -15.11035 -14.60882 -14.31023 -14.00860 -13.89643 -13.80086 -13.36822 -13.12116 -12.97242 -12.76859 -12.59671 -12.31259 -12.23915 -12.10818 -11.96274 -11.83671 -11.26262 -11.15046 -10.96224 -10.51981 -9.78733 -9.75398 -9.35738 -9.00923 -8.15486 -6.20696 -0.03231 0.45500 1.41873 1.42949 1.54296 1.58888 1.93820 2.42481 2.90697 3.10200 3.15968 3.44654 3.82271 3.84552 3.93955 4.17346 4.30336 4.34806 4.35503 4.39524 4.52091 4.56325 4.64778 4.68537 4.76124 4.82245 5.01202 5.05671 5.09126 5.14295 5.18892 5.34790 5.49604 5.57002 5.64765 5.68105 5.72628 6.04336 6.07707 6.09383 6.35481 6.51904 6.58622 6.60197 6.90571 7.44023 8.95586 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.014952 B = 0.005817 C = 0.004671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.163864 B = 4811.998795 C = 5992.611480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.078 3.922 3 N -0.530 5.530 4 C 0.209 3.791 5 C -0.505 4.505 6 H 0.075 0.925 7 C -0.002 4.002 8 N -0.938 5.938 9 Si 0.963 3.037 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.263 1.263 13 C 0.092 3.908 14 C -0.065 4.065 15 C -0.111 4.111 16 C -0.105 4.105 17 C -0.116 4.116 18 C -0.102 4.102 19 C -0.005 4.005 20 C -0.146 4.146 21 C -0.173 4.173 22 C 0.178 3.822 23 N -0.854 5.854 24 H 0.060 0.940 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.003 0.997 28 H 0.073 0.927 29 H 0.000 1.000 30 H -0.040 1.040 31 H 0.262 0.738 32 H 0.076 0.924 33 H 0.015 0.985 34 H 0.130 0.870 35 H 0.156 0.844 36 H 0.162 0.838 37 H 0.140 0.860 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.363 0.637 41 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.750 -11.816 12.871 19.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.049 4.049 3 N -0.255 5.255 4 C 0.083 3.917 5 C -0.543 4.543 6 H 0.093 0.907 7 C -0.199 4.199 8 N -0.580 5.580 9 Si 0.788 3.212 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.187 1.187 13 C -0.036 4.036 14 C -0.066 4.066 15 C -0.130 4.130 16 C -0.123 4.123 17 C -0.134 4.134 18 C -0.120 4.120 19 C -0.006 4.006 20 C -0.147 4.147 21 C -0.174 4.174 22 C 0.049 3.951 23 N -0.387 5.387 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.021 0.979 28 H 0.091 0.909 29 H 0.018 0.982 30 H -0.022 1.022 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.034 0.966 34 H 0.148 0.852 35 H 0.174 0.826 36 H 0.179 0.821 37 H 0.158 0.842 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.179 0.821 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 7.996 -10.892 13.037 18.776 hybrid contribution 0.472 -0.563 -1.594 1.755 sum 8.468 -11.455 11.443 18.272 Atomic orbital electron populations 1.21979 0.95303 0.99719 1.02789 1.21991 0.96188 0.88360 0.98390 1.62244 1.12216 1.16307 1.34684 1.19427 0.96599 0.91668 0.84008 1.21590 0.94340 1.38996 0.99407 0.90731 1.25879 1.02759 0.95966 0.95260 1.70100 1.37557 1.45718 1.04590 0.85469 0.79603 0.78885 0.77254 1.19869 1.21019 1.18706 1.21002 0.89705 0.99900 0.92971 1.19888 0.98740 0.92594 0.95367 1.21155 0.99356 1.00303 0.92144 1.21603 0.97460 0.96126 0.97080 1.21438 0.99325 0.93267 0.99333 1.21384 0.99107 1.00964 0.90562 1.16060 1.03899 0.90298 0.90304 1.19531 1.01770 0.97592 0.95832 1.22715 1.00191 0.98728 0.95756 1.18702 0.94893 0.91161 0.90350 1.58491 1.49845 1.21110 1.09285 0.92066 0.92857 0.93230 0.97884 0.90935 0.98165 1.02228 0.92934 0.90568 0.96642 0.85167 0.82593 0.82074 0.84193 0.89665 0.90277 0.82114 0.83548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.20 8.49 71.98 0.61 -5.59 16 2 C 0.08 3.49 4.19 86.30 0.36 3.85 16 3 N -0.53 -25.04 4.54 -905.37 -4.11 -29.16 16 4 C 0.21 11.74 4.74 85.56 0.41 12.15 16 5 C -0.51 -29.17 6.68 25.60 0.17 -29.00 16 6 H 0.07 4.21 5.80 -2.91 -0.02 4.19 16 7 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 8 N -0.94 -57.86 13.29 21.45 0.28 -57.57 16 9 Si 0.96 45.32 29.54 68.60 2.03 47.35 16 10 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 12 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 13 C 0.09 3.77 4.90 85.56 0.42 4.19 16 14 C -0.07 -2.23 4.86 -19.61 -0.10 -2.32 16 15 C -0.11 -3.14 9.68 22.23 0.22 -2.93 16 16 C -0.11 -2.22 10.04 22.32 0.22 -1.99 16 17 C -0.12 -2.25 10.03 22.23 0.22 -2.03 16 18 C -0.10 -2.48 9.75 22.52 0.22 -2.26 16 19 C -0.01 -0.16 4.62 -21.41 -0.10 -0.26 16 20 C -0.15 -4.92 9.17 30.02 0.28 -4.65 16 21 C -0.17 -5.48 12.49 31.13 0.39 -5.09 16 22 C 0.18 4.32 7.26 84.50 0.61 4.93 16 23 N -0.85 -18.27 9.60 -194.73 -1.87 -20.14 16 24 H 0.06 3.06 5.60 -2.38 -0.01 3.05 16 25 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.05 2.16 7.64 -2.39 -0.02 2.14 16 27 H 0.00 0.14 6.86 -2.39 -0.02 0.12 16 28 H 0.07 3.03 4.43 -2.39 -0.01 3.02 16 29 H 0.00 0.02 7.83 -2.39 -0.02 0.00 16 30 H -0.04 -2.49 7.85 -2.39 -0.02 -2.51 16 31 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 32 H 0.08 3.05 7.89 -2.38 -0.02 3.03 16 33 H 0.02 0.67 7.17 -2.39 -0.02 0.65 16 34 H 0.13 3.54 8.06 -2.91 -0.02 3.51 16 35 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 36 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 37 H 0.14 2.77 8.06 -2.91 -0.02 2.74 16 38 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 40 H 0.36 5.67 9.08 -89.69 -0.81 4.86 16 41 H 0.35 6.43 8.97 -89.69 -0.80 5.63 16 Total: -1.00 -70.97 334.74 0.16 -70.81 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: -0.57 Total: 19.33 kcal Atomic # 6 Polarization: -35.01 SS G_CDS: 4.40 Total: -30.62 kcal Atomic # 7 Polarization: -101.18 SS G_CDS: -5.70 Total: -106.87 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -70.97 0.16 -70.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042451116.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.196 kcal (2) G-P(sol) polarization free energy of solvation -70.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds