Wall clock time and date at job start Mon Mar 30 2020 05:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46905 * 109.47087 * 2 1 4 4 C 1.46905 * 110.99709 * 288.18949 * 3 2 1 5 5 C 1.50708 * 109.46906 * 160.35208 * 4 3 2 6 6 H 1.07999 * 119.99745 * 4.65037 * 5 4 3 7 7 C 1.37875 * 120.00100 * 184.64724 * 5 4 3 8 8 N 1.31520 * 119.99640 * 0.02562 * 7 5 4 9 9 Si 1.86791 * 119.99845 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47343 * 60.00245 * 9 7 5 11 11 H 1.48507 * 109.46834 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47239 * 299.99612 * 9 7 5 13 13 C 1.46896 * 111.00272 * 164.23489 * 3 2 1 14 14 C 1.50698 * 109.47155 * 293.95821 * 13 3 2 15 15 C 1.38341 * 119.85823 * 89.99614 * 14 13 3 16 16 C 1.37972 * 120.14056 * 179.97438 * 15 14 13 17 17 C 1.39542 * 119.85753 * 0.02816 * 16 15 14 18 18 C 1.43202 * 120.14174 * 179.97438 * 17 16 15 19 19 C 7.42652 * 110.85933 * 94.58764 * 2 1 3 20 20 C 8.83138 * 108.49636 * 96.73413 * 2 1 3 21 21 N 1.46899 * 109.47331 * 191.74533 * 20 19 18 22 22 C 1.39539 * 119.71772 * 0.27293 * 17 16 15 23 23 C 1.37983 * 119.85206 * 359.42365 * 22 17 16 24 24 H 1.08998 * 109.47118 * 299.63667 * 1 2 3 25 25 H 1.08996 * 109.47562 * 59.63696 * 1 2 3 26 26 H 1.09000 * 109.46923 * 179.63826 * 1 2 3 27 27 H 1.08999 * 109.46907 * 240.00629 * 2 1 3 28 28 H 1.08997 * 109.47521 * 119.99916 * 2 1 3 29 29 H 1.08996 * 109.47415 * 280.35321 * 4 3 2 30 30 H 1.09003 * 109.46990 * 40.35701 * 4 3 2 31 31 H 0.97000 * 119.99305 * 180.02562 * 8 7 5 32 32 H 1.08999 * 109.47361 * 173.95372 * 13 3 2 33 33 H 1.09006 * 109.47002 * 53.95285 * 13 3 2 34 34 H 1.07998 * 119.92884 * 0.02734 * 15 14 13 35 35 H 1.08004 * 120.07593 * 179.97438 * 16 15 14 36 36 H 1.09004 * 109.47408 * 311.74965 * 20 19 18 37 37 H 1.09003 * 109.47439 * 71.74831 * 20 19 18 38 38 H 1.00906 * 110.99870 * 56.05014 * 21 20 19 39 39 H 1.00892 * 111.00463 * 179.97438 * 21 20 19 40 40 H 1.07994 * 120.07472 * 179.70457 * 22 17 16 41 41 H 1.08000 * 119.92864 * 180.30218 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7915 2.0240 -1.3030 5 6 1.8431 3.5218 -1.1438 6 1 2.1010 3.9547 -0.1886 7 6 1.5610 4.3393 -2.2176 8 7 1.2465 3.8120 -3.3807 9 14 1.6257 6.1957 -2.0205 10 1 2.9935 6.6025 -1.6094 11 1 1.2848 6.8428 -3.3129 12 1 0.6509 6.6175 -0.9828 13 6 3.4394 1.4415 0.3726 14 6 3.6005 1.0043 1.8057 15 6 3.8142 -0.3308 2.0986 16 6 3.9629 -0.7375 3.4086 17 6 3.8968 0.2010 4.4392 18 6 4.0498 -0.2144 5.8010 19 6 4.1744 -0.5551 6.9175 20 6 4.3317 -0.9821 8.3174 21 7 5.5637 -0.4039 8.8703 22 6 3.6748 1.5452 4.1374 23 6 3.5339 1.9398 2.8228 24 1 -0.3633 0.5082 0.8932 25 1 -0.3634 0.5194 -0.8867 26 1 -0.3633 -1.0277 -0.0065 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 2.5635 1.7063 -2.0037 30 1 0.8127 1.7327 -1.6841 31 1 1.0485 4.3872 -4.1363 32 1 3.8041 2.4626 0.2611 33 1 4.0120 0.7784 -0.2761 34 1 3.8655 -1.0561 1.3001 35 1 4.1293 -1.7801 3.6361 36 1 3.4763 -0.6399 8.9000 37 1 4.3893 -2.0697 8.3613 38 1 5.5626 0.6014 8.7822 39 1 5.6942 -0.6821 9.8313 40 1 3.6178 2.2757 4.9308 41 1 3.3669 2.9806 2.5875 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042451118.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:00 Heat of formation + Delta-G solvation = 71.114253 kcal Electronic energy + Delta-G solvation = -19552.450355 eV Core-core repulsion = 16626.090473 eV Total energy + Delta-G solvation = -2926.359883 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.37017 -36.83904 -35.80492 -33.35036 -32.56199 -31.03399 -30.81157 -29.61408 -27.16100 -25.75170 -24.40472 -22.84244 -22.22778 -21.45781 -19.66629 -18.17391 -16.59404 -16.45383 -15.53136 -15.29054 -15.19591 -14.84137 -14.65802 -14.32603 -13.94140 -13.46000 -13.37619 -13.27470 -12.98308 -12.80668 -12.37032 -11.87379 -11.58295 -11.27658 -11.25341 -10.90710 -10.82178 -10.75232 -10.70303 -10.49140 -10.24439 -10.16582 -9.65996 -9.26173 -9.17952 -8.76457 -8.41298 -8.17596 -7.24851 -6.01498 -4.02631 1.02682 1.57317 2.52479 2.89176 3.33897 3.38098 3.40878 3.91815 4.04048 4.43359 4.45268 4.98255 5.03201 5.07116 5.10251 5.12980 5.23520 5.34594 5.40737 5.62192 5.68017 5.72818 5.88591 6.02710 6.09269 6.15944 6.25983 6.33911 6.47316 6.51249 6.58611 6.60496 6.61311 6.83034 6.92676 6.96310 7.11378 7.25110 7.33969 7.47472 7.82425 8.12603 8.20358 8.54710 9.04308 9.61245 11.09049 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.024489 B = 0.003378 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.073556 B = 8287.802654 C = 9026.924385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.044 3.956 3 N -0.529 5.529 4 C 0.191 3.809 5 C -0.504 4.504 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.900 5.900 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.276 1.276 13 C 0.093 3.907 14 C -0.045 4.045 15 C -0.119 4.119 16 C -0.095 4.095 17 C -0.008 4.008 18 C -0.107 4.107 19 C -0.186 4.186 20 C 0.181 3.819 21 N -0.848 5.848 22 C -0.094 4.094 23 C -0.097 4.097 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.044 0.956 27 H 0.020 0.980 28 H 0.064 0.936 29 H -0.011 1.011 30 H 0.038 0.962 31 H 0.261 0.739 32 H 0.092 0.908 33 H 0.031 0.969 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.052 0.948 37 H 0.095 0.905 38 H 0.346 0.654 39 H 0.348 0.652 40 H 0.121 0.879 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.203 -9.216 18.248 21.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.084 4.084 3 N -0.253 5.253 4 C 0.066 3.934 5 C -0.543 4.543 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.540 5.540 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.202 1.202 13 C -0.034 4.034 14 C -0.046 4.046 15 C -0.137 4.137 16 C -0.113 4.113 17 C -0.008 4.008 18 C -0.108 4.108 19 C -0.187 4.187 20 C 0.051 3.949 21 N -0.379 5.379 22 C -0.112 4.112 23 C -0.116 4.116 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.063 0.937 27 H 0.039 0.961 28 H 0.082 0.918 29 H 0.007 0.993 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.111 0.889 33 H 0.049 0.951 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.070 0.930 37 H 0.113 0.887 38 H 0.159 0.841 39 H 0.162 0.838 40 H 0.139 0.861 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.247 -9.331 17.837 20.802 hybrid contribution -0.247 1.019 0.016 1.049 sum 4.999 -8.312 17.853 20.318 Atomic orbital electron populations 1.21727 0.95557 0.99863 1.02842 1.22122 0.96073 0.91020 0.99225 1.62194 1.14215 1.14389 1.34545 1.19812 0.96568 0.94218 0.82808 1.21124 1.46168 0.90639 0.96355 0.91980 1.24984 0.95506 0.98917 0.95235 1.69949 1.47558 1.35317 1.01127 0.86580 0.78511 0.85259 0.77168 1.20287 1.21425 1.20195 1.21048 0.90907 1.01975 0.89517 1.20244 0.94846 0.92862 0.96625 1.21007 1.00982 0.95788 0.95938 1.21067 0.99642 0.98663 0.91956 1.15828 1.04761 0.93629 0.86583 1.19359 0.99895 0.99514 0.92061 1.21914 1.01939 1.00768 0.94051 1.18567 0.91211 0.99826 0.85252 1.58638 1.37973 1.16149 1.25163 1.21149 0.99060 0.94168 0.96820 1.21051 0.98702 1.00413 0.91416 0.92483 0.92060 0.93734 0.96130 0.91809 0.99335 0.94352 0.92907 0.88941 0.95101 0.85859 0.86127 0.93022 0.88731 0.84084 0.83850 0.86057 0.85022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.98 37.16 0.37 -2.12 16 2 C 0.04 0.80 5.52 -3.82 -0.02 0.78 16 3 N -0.53 -11.20 4.37 -237.51 -1.04 -12.24 16 4 C 0.19 4.87 4.59 -4.97 -0.02 4.85 16 5 C -0.50 -13.92 8.61 -34.44 -0.30 -14.21 16 6 H 0.06 1.69 7.66 -52.49 -0.40 1.28 16 7 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -26.53 13.29 55.43 0.74 -25.79 16 9 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 C 0.09 1.75 4.94 -4.98 -0.02 1.73 16 14 C -0.05 -0.73 4.94 -104.54 -0.52 -1.25 16 15 C -0.12 -1.70 7.82 -39.64 -0.31 -2.01 16 16 C -0.10 -1.29 9.75 -39.19 -0.38 -1.68 16 17 C -0.01 -0.11 5.72 -107.00 -0.61 -0.72 16 18 C -0.11 -1.47 13.24 -38.84 -0.51 -1.98 16 19 C -0.19 -2.24 13.60 -37.12 -0.50 -2.74 16 20 C 0.18 1.45 7.26 -6.61 -0.05 1.40 16 21 N -0.85 -6.22 9.60 -12.90 -0.12 -6.34 16 22 C -0.09 -1.33 9.75 -39.19 -0.38 -1.71 16 23 C -0.10 -1.50 9.68 -39.63 -0.38 -1.89 16 24 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 25 H 0.06 1.19 6.52 -51.93 -0.34 0.85 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.02 0.38 8.05 -51.93 -0.42 -0.04 16 28 H 0.06 1.05 5.13 -51.93 -0.27 0.78 16 29 H -0.01 -0.30 8.00 -51.93 -0.42 -0.72 16 30 H 0.04 1.05 6.23 -51.93 -0.32 0.73 16 31 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.09 1.86 7.26 -51.93 -0.38 1.48 16 33 H 0.03 0.56 8.06 -51.93 -0.42 0.14 16 34 H 0.12 1.60 7.73 -52.49 -0.41 1.19 16 35 H 0.12 1.41 8.06 -52.48 -0.42 0.98 16 36 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.35 2.39 8.97 -39.29 -0.35 2.03 16 39 H 0.35 1.58 9.08 -39.30 -0.36 1.22 16 40 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 41 H 0.13 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 346.73 15.07 5.23 5.23 Total: -1.00 -30.88 346.73 -10.14 -41.01 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -6.17 Total: 1.77 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: -3.75 Total: -20.11 kcal Atomic # 7 Polarization: -43.95 SS G_CDS: -0.43 Total: -44.37 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.88 -10.14 -41.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042451118.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.129 kcal (2) G-P(sol) polarization free energy of solvation -30.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds