Wall clock time and date at job start Mon Mar 30 2020 05:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46905 * 109.47087 * 2 1 4 4 C 1.46905 * 110.99709 * 288.18949 * 3 2 1 5 5 C 1.50708 * 109.46906 * 160.35208 * 4 3 2 6 6 H 1.07999 * 119.99745 * 4.65037 * 5 4 3 7 7 C 1.37875 * 120.00100 * 184.64724 * 5 4 3 8 8 N 1.31520 * 119.99640 * 0.02562 * 7 5 4 9 9 Si 1.86791 * 119.99845 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47343 * 60.00245 * 9 7 5 11 11 H 1.48507 * 109.46834 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47239 * 299.99612 * 9 7 5 13 13 C 1.46896 * 111.00272 * 164.23489 * 3 2 1 14 14 C 1.50698 * 109.47155 * 293.95821 * 13 3 2 15 15 C 1.38341 * 119.85823 * 89.99614 * 14 13 3 16 16 C 1.37972 * 120.14056 * 179.97438 * 15 14 13 17 17 C 1.39542 * 119.85753 * 0.02816 * 16 15 14 18 18 C 1.43202 * 120.14174 * 179.97438 * 17 16 15 19 19 C 7.42652 * 110.85933 * 94.58764 * 2 1 3 20 20 C 8.83138 * 108.49636 * 96.73413 * 2 1 3 21 21 N 1.46899 * 109.47331 * 191.74533 * 20 19 18 22 22 C 1.39539 * 119.71772 * 0.27293 * 17 16 15 23 23 C 1.37983 * 119.85206 * 359.42365 * 22 17 16 24 24 H 1.08998 * 109.47118 * 299.63667 * 1 2 3 25 25 H 1.08996 * 109.47562 * 59.63696 * 1 2 3 26 26 H 1.09000 * 109.46923 * 179.63826 * 1 2 3 27 27 H 1.08999 * 109.46907 * 240.00629 * 2 1 3 28 28 H 1.08997 * 109.47521 * 119.99916 * 2 1 3 29 29 H 1.08996 * 109.47415 * 280.35321 * 4 3 2 30 30 H 1.09003 * 109.46990 * 40.35701 * 4 3 2 31 31 H 0.97000 * 119.99305 * 180.02562 * 8 7 5 32 32 H 1.08999 * 109.47361 * 173.95372 * 13 3 2 33 33 H 1.09006 * 109.47002 * 53.95285 * 13 3 2 34 34 H 1.07998 * 119.92884 * 0.02734 * 15 14 13 35 35 H 1.08004 * 120.07593 * 179.97438 * 16 15 14 36 36 H 1.09004 * 109.47408 * 311.74965 * 20 19 18 37 37 H 1.09003 * 109.47439 * 71.74831 * 20 19 18 38 38 H 1.00906 * 110.99870 * 56.05014 * 21 20 19 39 39 H 1.00892 * 111.00463 * 179.97438 * 21 20 19 40 40 H 1.07994 * 120.07472 * 179.70457 * 22 17 16 41 41 H 1.08000 * 119.92864 * 180.30218 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7915 2.0240 -1.3030 5 6 1.8431 3.5218 -1.1438 6 1 2.1010 3.9547 -0.1886 7 6 1.5610 4.3393 -2.2176 8 7 1.2465 3.8120 -3.3807 9 14 1.6257 6.1957 -2.0205 10 1 2.9935 6.6025 -1.6094 11 1 1.2848 6.8428 -3.3129 12 1 0.6509 6.6175 -0.9828 13 6 3.4394 1.4415 0.3726 14 6 3.6005 1.0043 1.8057 15 6 3.8142 -0.3308 2.0986 16 6 3.9629 -0.7375 3.4086 17 6 3.8968 0.2010 4.4392 18 6 4.0498 -0.2144 5.8010 19 6 4.1744 -0.5551 6.9175 20 6 4.3317 -0.9821 8.3174 21 7 5.5637 -0.4039 8.8703 22 6 3.6748 1.5452 4.1374 23 6 3.5339 1.9398 2.8228 24 1 -0.3633 0.5082 0.8932 25 1 -0.3634 0.5194 -0.8867 26 1 -0.3633 -1.0277 -0.0065 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 2.5635 1.7063 -2.0037 30 1 0.8127 1.7327 -1.6841 31 1 1.0485 4.3872 -4.1363 32 1 3.8041 2.4626 0.2611 33 1 4.0120 0.7784 -0.2761 34 1 3.8655 -1.0561 1.3001 35 1 4.1293 -1.7801 3.6361 36 1 3.4763 -0.6399 8.9000 37 1 4.3893 -2.0697 8.3613 38 1 5.5626 0.6014 8.7822 39 1 5.6942 -0.6821 9.8313 40 1 3.6178 2.2757 4.9308 41 1 3.3669 2.9806 2.5875 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042451118.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:59 Heat of formation + Delta-G solvation = 51.816507 kcal Electronic energy + Delta-G solvation = -19553.287169 eV Core-core repulsion = 16626.090473 eV Total energy + Delta-G solvation = -2927.196696 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.158 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.57428 -38.38420 -36.54274 -34.85409 -34.18637 -32.23863 -31.93824 -31.11194 -28.85327 -26.92573 -25.59241 -24.51615 -23.54651 -22.70445 -21.27572 -19.13128 -18.55897 -17.35354 -16.91650 -16.68607 -16.39039 -15.96215 -15.84098 -15.47931 -15.36214 -15.06782 -14.48927 -14.37089 -14.22020 -14.03339 -13.79260 -13.42402 -13.27429 -12.91621 -12.74793 -12.58910 -12.40211 -12.21390 -12.06455 -11.99272 -11.81750 -11.46322 -11.23771 -11.09056 -10.56789 -9.88664 -9.75971 -9.30406 -8.96897 -8.17279 -6.26691 -0.07983 0.45624 1.41825 1.44710 1.52368 1.58207 1.87135 2.41952 2.90853 3.08029 3.14618 3.47792 3.87667 3.88616 3.93796 4.05121 4.24072 4.34683 4.35840 4.47463 4.48587 4.52728 4.66974 4.70256 4.74595 4.79067 4.95727 5.04843 5.05684 5.11593 5.26343 5.27774 5.37657 5.40704 5.49495 5.68944 5.73002 5.97493 6.07858 6.11021 6.39615 6.49665 6.58111 6.65162 6.88204 7.42297 8.92988 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.024489 B = 0.003378 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.073556 B = 8287.802654 C = 9026.924385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.043 3.957 3 N -0.536 5.536 4 C 0.206 3.794 5 C -0.518 4.518 6 H 0.061 0.939 7 C 0.001 3.999 8 N -0.935 5.935 9 Si 0.966 3.034 10 H -0.267 1.267 11 H -0.284 1.284 12 H -0.269 1.269 13 C 0.099 3.901 14 C -0.063 4.063 15 C -0.115 4.115 16 C -0.094 4.094 17 C -0.006 4.006 18 C -0.156 4.156 19 C -0.162 4.162 20 C 0.175 3.825 21 N -0.859 5.859 22 C -0.096 4.096 23 C -0.106 4.106 24 H 0.053 0.947 25 H 0.033 0.967 26 H 0.078 0.922 27 H 0.019 0.981 28 H 0.088 0.912 29 H -0.039 1.039 30 H 0.015 0.985 31 H 0.263 0.737 32 H 0.070 0.930 33 H 0.033 0.967 34 H 0.138 0.862 35 H 0.143 0.857 36 H 0.075 0.925 37 H 0.111 0.889 38 H 0.348 0.652 39 H 0.364 0.636 40 H 0.137 0.863 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.600 -9.927 20.925 23.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.085 4.085 3 N -0.261 5.261 4 C 0.080 3.920 5 C -0.557 4.557 6 H 0.080 0.920 7 C -0.196 4.196 8 N -0.576 5.576 9 Si 0.790 3.210 10 H -0.192 1.192 11 H -0.210 1.210 12 H -0.194 1.194 13 C -0.029 4.029 14 C -0.063 4.063 15 C -0.133 4.133 16 C -0.112 4.112 17 C -0.007 4.007 18 C -0.157 4.157 19 C -0.162 4.162 20 C 0.046 3.954 21 N -0.392 5.392 22 C -0.114 4.114 23 C -0.125 4.125 24 H 0.072 0.928 25 H 0.052 0.948 26 H 0.096 0.904 27 H 0.037 0.963 28 H 0.106 0.894 29 H -0.022 1.022 30 H 0.033 0.967 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.051 0.949 34 H 0.156 0.844 35 H 0.161 0.839 36 H 0.093 0.907 37 H 0.128 0.872 38 H 0.161 0.839 39 H 0.180 0.820 40 H 0.155 0.845 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.655 -10.058 20.549 23.567 hybrid contribution -0.331 1.137 -0.663 1.357 sum 5.324 -8.921 19.885 22.436 Atomic orbital electron populations 1.21695 0.94957 1.01581 1.01250 1.22232 0.96593 0.89441 1.00233 1.62116 1.16124 1.16261 1.31601 1.19445 0.94240 0.93891 0.84385 1.21441 1.45940 0.91885 0.96398 0.92039 1.25876 0.94998 1.03951 0.94817 1.70079 1.48473 1.37106 1.01937 0.85490 0.78983 0.79189 0.77288 1.19221 1.20992 1.19446 1.20927 0.89348 1.00940 0.91636 1.20003 0.97375 0.94068 0.94860 1.21105 1.00320 0.95055 0.96848 1.21299 0.98851 0.99722 0.91322 1.16027 1.03573 0.93671 0.87404 1.19492 1.02075 1.01551 0.92619 1.22834 0.99569 0.99025 0.94776 1.18845 0.92428 1.00816 0.83282 1.58610 1.37616 1.16404 1.26550 1.21281 0.98794 0.94837 0.96498 1.21059 0.99266 1.00130 0.92044 0.92772 0.94833 0.90361 0.96286 0.89366 1.02154 0.96738 0.92789 0.91106 0.94870 0.84440 0.83939 0.90747 0.87152 0.83910 0.82001 0.84537 0.85650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.76 9.98 71.98 0.72 -4.04 16 2 C 0.04 1.55 5.52 86.30 0.48 2.03 16 3 N -0.54 -23.31 4.37 -905.34 -3.96 -27.26 16 4 C 0.21 11.02 4.59 85.56 0.39 11.41 16 5 C -0.52 -29.45 8.61 25.60 0.22 -29.23 16 6 H 0.06 3.42 7.66 -2.91 -0.02 3.40 16 7 C 0.00 0.08 5.46 84.65 0.46 0.54 16 8 N -0.94 -56.57 13.29 21.45 0.28 -56.28 16 9 Si 0.97 44.55 29.54 68.60 2.03 46.58 16 10 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 13 C 0.10 3.81 4.94 85.56 0.42 4.23 16 14 C -0.06 -2.01 4.94 -19.81 -0.10 -2.11 16 15 C -0.11 -3.13 7.82 22.23 0.17 -2.95 16 16 C -0.09 -2.37 9.75 22.52 0.22 -2.15 16 17 C -0.01 -0.18 5.72 -21.40 -0.12 -0.30 16 18 C -0.16 -3.99 13.24 30.02 0.40 -3.60 16 19 C -0.16 -3.46 13.60 31.13 0.42 -3.04 16 20 C 0.18 2.23 7.26 84.50 0.61 2.85 16 21 N -0.86 -10.14 9.60 -194.72 -1.87 -12.01 16 22 C -0.10 -2.64 9.75 22.52 0.22 -2.42 16 23 C -0.11 -3.29 9.68 22.24 0.22 -3.07 16 24 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.03 1.33 6.52 -2.39 -0.02 1.31 16 26 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.02 0.70 8.05 -2.39 -0.02 0.68 16 28 H 0.09 2.78 5.13 -2.39 -0.01 2.77 16 29 H -0.04 -2.26 8.00 -2.39 -0.02 -2.28 16 30 H 0.01 0.84 6.23 -2.39 -0.01 0.82 16 31 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 32 H 0.07 2.98 7.26 -2.39 -0.02 2.96 16 33 H 0.03 1.24 8.06 -2.38 -0.02 1.22 16 34 H 0.14 3.29 7.73 -2.91 -0.02 3.27 16 35 H 0.14 2.93 8.06 -2.91 -0.02 2.90 16 36 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.35 3.95 8.97 -89.69 -0.80 3.14 16 39 H 0.36 2.23 9.08 -89.70 -0.81 1.42 16 40 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 41 H 0.13 3.92 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -67.38 346.73 0.64 -66.74 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -0.58 Total: 14.09 kcal Atomic # 6 Polarization: -36.58 SS G_CDS: 4.73 Total: -31.85 kcal Atomic # 7 Polarization: -90.02 SS G_CDS: -5.54 Total: -95.56 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -67.38 0.64 -66.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042451118.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.560 kcal (2) G-P(sol) polarization free energy of solvation -67.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds