Wall clock time and date at job start Mon Mar 30 2020 05:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46902 * 109.47076 * 2 1 4 4 C 1.46904 * 111.00194 * 298.68062 * 3 2 1 5 5 C 1.50701 * 109.46952 * 288.68800 * 4 3 2 6 6 H 1.07994 * 120.00079 * 0.25679 * 5 4 3 7 7 C 1.37875 * 119.99786 * 180.25635 * 5 4 3 8 8 N 1.31510 * 119.99918 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00273 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47207 * 89.99875 * 9 7 5 11 11 H 1.48496 * 109.47313 * 210.00678 * 9 7 5 12 12 H 1.48507 * 109.46781 * 330.00001 * 9 7 5 13 13 C 1.46904 * 111.00322 * 62.63341 * 3 2 1 14 14 C 1.50700 * 109.46803 * 66.04364 * 13 3 2 15 15 C 1.38367 * 119.93090 * 270.02427 * 14 13 3 16 16 C 1.38330 * 120.28620 * 180.02562 * 15 14 13 17 17 C 1.37995 * 120.14122 * 359.70438 * 16 15 14 18 18 C 1.39525 * 119.85329 * 0.52770 * 17 16 15 19 19 C 1.43197 * 120.13546 * 179.77051 * 18 17 16 20 20 C 7.19559 * 132.99426 * 64.53964 * 2 1 3 21 21 C 8.56542 * 136.50375 * 62.03682 * 2 1 3 22 22 N 1.46900 * 109.46959 * 16.91302 * 21 20 19 23 23 C 1.37952 * 119.92743 * 90.00700 * 14 13 3 24 24 H 1.08998 * 109.47573 * 302.78214 * 1 2 3 25 25 H 1.09003 * 109.47309 * 62.78043 * 1 2 3 26 26 H 1.09000 * 109.47307 * 182.77950 * 1 2 3 27 27 H 1.08992 * 109.47301 * 239.99963 * 2 1 3 28 28 H 1.08997 * 109.47344 * 119.99293 * 2 1 3 29 29 H 1.09003 * 109.46597 * 48.68324 * 4 3 2 30 30 H 1.08998 * 109.47168 * 168.68633 * 4 3 2 31 31 H 0.97003 * 120.00147 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.46981 * 306.05345 * 13 3 2 33 33 H 1.08995 * 109.47499 * 186.04870 * 13 3 2 34 34 H 1.08000 * 119.85646 * 0.02562 * 15 14 13 35 35 H 1.07999 * 119.92570 * 179.97438 * 16 15 14 36 36 H 1.07994 * 120.07373 * 180.28009 * 17 16 15 37 37 H 1.09000 * 109.46944 * 256.91351 * 21 20 19 38 38 H 1.09000 * 109.47064 * 136.91054 * 21 20 19 39 39 H 1.00900 * 111.00010 * 180.02562 * 22 21 20 40 40 H 1.00905 * 110.99917 * 303.95462 * 22 21 20 41 41 H 1.08005 * 120.07330 * 0.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5746 2.1008 -1.2032 5 6 2.3201 1.5773 -2.4037 6 1 3.0484 0.7887 -2.2854 7 6 2.0725 2.1053 -3.6530 8 7 2.7227 1.6482 -4.7007 9 14 0.8123 3.4688 -3.8578 10 1 1.4798 4.7867 -3.7064 11 1 0.1982 3.3769 -5.2068 12 1 -0.2433 3.3268 -2.8229 13 6 1.6007 2.0916 1.2180 14 6 2.2756 1.4727 2.4149 15 6 1.6661 0.4286 3.0879 16 6 2.2787 -0.1446 4.1878 17 6 3.5058 0.3183 4.6170 18 6 4.1234 1.3740 3.9456 19 6 5.3945 1.8623 4.3888 20 6 6.4368 2.2625 4.7519 21 6 7.7435 2.7645 5.2073 22 7 8.7697 1.7392 4.9757 23 6 3.4999 1.9481 2.8370 24 1 -0.3634 0.5564 0.8640 25 1 -0.3634 0.4701 -0.9139 26 1 -0.3634 -1.0264 0.0498 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 0.5049 1.9452 -1.3436 30 1 1.7747 3.1659 -1.0872 31 1 2.5488 2.0198 -5.5797 32 1 0.5193 2.0131 1.3298 33 1 1.8832 3.1417 1.1442 34 1 0.7079 0.0596 2.7530 35 1 1.7975 -0.9590 4.7090 36 1 3.9852 -0.1330 5.4730 37 1 7.6934 2.9945 6.2716 38 1 7.9996 3.6669 4.6521 39 1 9.6765 2.0598 5.2807 40 1 8.5224 0.8716 5.4275 41 1 3.9746 2.7632 2.3109 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042451126.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:02 Heat of formation + Delta-G solvation = 79.702625 kcal Electronic energy + Delta-G solvation = -19776.254632 eV Core-core repulsion = 16850.267169 eV Total energy + Delta-G solvation = -2925.987463 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.50647 -37.18245 -35.77143 -33.27359 -32.52304 -31.58529 -30.13066 -29.60992 -27.53628 -25.69148 -24.87883 -22.94710 -22.66456 -21.31711 -19.33157 -17.66553 -16.73384 -16.50292 -15.90522 -15.58910 -15.20961 -15.00828 -14.63822 -14.50527 -14.07746 -13.67365 -13.27048 -13.07677 -12.99363 -12.81603 -12.42737 -12.08569 -11.74127 -11.51900 -11.28952 -11.15205 -11.00960 -10.79613 -10.55026 -10.43873 -10.15795 -9.96911 -9.85811 -9.27670 -9.11208 -8.69184 -8.53434 -8.33914 -7.29454 -6.01906 -3.98478 0.98986 1.49434 2.57236 2.88430 3.29320 3.36885 3.37672 3.89146 4.05607 4.43714 4.50743 4.89083 4.95994 5.05989 5.07735 5.14018 5.22452 5.30561 5.34465 5.47181 5.60603 5.69857 5.77085 5.87998 5.93624 6.05270 6.13756 6.16342 6.35191 6.47998 6.49610 6.54096 6.66962 6.74210 6.82897 6.94707 7.02380 7.05914 7.06575 7.51749 7.63600 7.91937 8.06216 8.69444 9.08536 9.59763 11.11449 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.017099 B = 0.004031 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.131723 B = 6945.245385 C = 8017.243759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.056 3.944 3 N -0.518 5.518 4 C 0.157 3.843 5 C -0.504 4.504 6 H 0.080 0.920 7 C 0.068 3.932 8 N -0.901 5.901 9 Si 0.873 3.127 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.268 1.268 13 C 0.081 3.919 14 C -0.060 4.060 15 C -0.103 4.103 16 C -0.123 4.123 17 C -0.103 4.103 18 C 0.005 3.995 19 C -0.112 4.112 20 C -0.177 4.177 21 C 0.180 3.820 22 N -0.847 5.847 23 C -0.071 4.071 24 H 0.046 0.954 25 H 0.064 0.936 26 H 0.051 0.949 27 H 0.085 0.915 28 H 0.060 0.940 29 H -0.002 1.002 30 H 0.021 0.979 31 H 0.263 0.737 32 H 0.040 0.960 33 H 0.077 0.923 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.120 0.880 37 H 0.051 0.949 38 H 0.097 0.903 39 H 0.349 0.651 40 H 0.346 0.654 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.039 -0.441 21.807 21.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.072 4.072 3 N -0.241 5.241 4 C 0.031 3.969 5 C -0.542 4.542 6 H 0.098 0.902 7 C -0.134 4.134 8 N -0.540 5.540 9 Si 0.700 3.300 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.193 1.193 13 C -0.047 4.047 14 C -0.061 4.061 15 C -0.122 4.122 16 C -0.141 4.141 17 C -0.121 4.121 18 C 0.005 3.995 19 C -0.114 4.114 20 C -0.178 4.178 21 C 0.051 3.949 22 N -0.378 5.378 23 C -0.089 4.089 24 H 0.065 0.935 25 H 0.083 0.917 26 H 0.070 0.930 27 H 0.103 0.897 28 H 0.078 0.922 29 H 0.016 0.984 30 H 0.039 0.961 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.095 0.905 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.138 0.862 37 H 0.069 0.931 38 H 0.115 0.885 39 H 0.162 0.838 40 H 0.158 0.842 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.407 -0.319 20.809 20.950 hybrid contribution -1.388 0.762 0.711 1.736 sum 1.018 0.442 21.520 21.548 Atomic orbital electron populations 1.22429 0.99575 1.01151 1.01834 1.22064 0.91830 0.91111 1.02235 1.62223 1.59112 1.01916 1.00860 1.20274 0.94552 0.93742 0.88300 1.21015 1.22698 1.21195 0.89320 0.90173 1.24890 0.95949 0.96641 0.95891 1.69894 1.42088 1.42876 0.99155 0.86900 0.82416 0.83130 0.77525 1.20197 1.21262 1.19315 1.21150 0.96589 0.98077 0.88855 1.19835 0.94543 0.95818 0.95858 1.21236 1.00173 0.95661 0.95081 1.20971 0.95369 1.00372 0.97372 1.21065 0.95384 0.95980 0.99653 1.15864 0.89707 0.97236 0.96696 1.19280 0.93356 0.98557 1.00160 1.21942 0.94515 1.00901 1.00422 1.18589 0.83517 0.94658 0.98152 1.58601 1.04719 1.06612 1.67857 1.21114 0.94060 0.99603 0.94144 0.93518 0.91658 0.93019 0.89691 0.92165 0.98438 0.96106 0.92725 0.94164 0.90468 0.85919 0.85840 0.86207 0.93120 0.88527 0.83785 0.84181 0.85425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.17 9.12 37.15 0.34 -2.83 16 2 C 0.06 1.06 5.55 -3.83 -0.02 1.03 16 3 N -0.52 -10.76 4.65 -237.52 -1.11 -11.87 16 4 C 0.16 3.77 3.64 -4.97 -0.02 3.75 16 5 C -0.50 -14.34 9.12 -34.44 -0.31 -14.65 16 6 H 0.08 2.51 7.70 -52.49 -0.40 2.11 16 7 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 8 N -0.90 -27.78 13.96 55.43 0.77 -27.01 16 9 Si 0.87 21.49 27.46 -169.99 -4.67 16.82 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.27 -6.32 6.55 56.52 0.37 -5.95 16 13 C 0.08 1.38 4.91 -4.97 -0.02 1.36 16 14 C -0.06 -0.92 4.88 -104.68 -0.51 -1.43 16 15 C -0.10 -1.37 7.91 -39.50 -0.31 -1.68 16 16 C -0.12 -1.45 10.03 -39.64 -0.40 -1.85 16 17 C -0.10 -1.29 9.75 -39.19 -0.38 -1.67 16 18 C 0.00 0.07 5.72 -107.00 -0.61 -0.54 16 19 C -0.11 -1.62 13.24 -38.84 -0.51 -2.14 16 20 C -0.18 -2.28 13.60 -37.12 -0.50 -2.78 16 21 C 0.18 1.60 7.26 -6.61 -0.05 1.56 16 22 N -0.85 -7.12 9.60 -12.90 -0.12 -7.24 16 23 C -0.07 -1.10 9.40 -39.20 -0.37 -1.47 16 24 H 0.05 0.69 5.59 -51.93 -0.29 0.40 16 25 H 0.06 1.23 6.35 -51.93 -0.33 0.90 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.08 1.82 7.20 -51.93 -0.37 1.45 16 28 H 0.06 1.03 5.97 -51.93 -0.31 0.72 16 29 H 0.00 -0.05 4.96 -51.93 -0.26 -0.30 16 30 H 0.02 0.50 7.24 -51.93 -0.38 0.13 16 31 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 32 H 0.04 0.64 5.97 -51.93 -0.31 0.33 16 33 H 0.08 1.29 7.81 -51.93 -0.41 0.89 16 34 H 0.12 1.49 7.22 -52.49 -0.38 1.11 16 35 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 37 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.35 1.93 9.08 -39.29 -0.36 1.57 16 40 H 0.35 2.63 8.97 -39.29 -0.35 2.28 16 41 H 0.13 2.00 8.06 -52.48 -0.42 1.58 16 LS Contribution 337.01 15.07 5.08 5.08 Total: -1.00 -32.35 337.01 -9.68 -42.03 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -5.85 Total: 3.69 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: -3.79 Total: -21.50 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: -0.46 Total: -46.12 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.35 -9.68 -42.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042451126.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.732 kcal (2) G-P(sol) polarization free energy of solvation -32.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds