Wall clock time and date at job start Mon Mar 30 2020 05:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46902 * 109.47076 * 2 1 4 4 C 1.46904 * 111.00194 * 298.68062 * 3 2 1 5 5 C 1.50701 * 109.46952 * 288.68800 * 4 3 2 6 6 H 1.07994 * 120.00079 * 0.25679 * 5 4 3 7 7 C 1.37875 * 119.99786 * 180.25635 * 5 4 3 8 8 N 1.31510 * 119.99918 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00273 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47207 * 89.99875 * 9 7 5 11 11 H 1.48496 * 109.47313 * 210.00678 * 9 7 5 12 12 H 1.48507 * 109.46781 * 330.00001 * 9 7 5 13 13 C 1.46904 * 111.00322 * 62.63341 * 3 2 1 14 14 C 1.50700 * 109.46803 * 66.04364 * 13 3 2 15 15 C 1.38367 * 119.93090 * 270.02427 * 14 13 3 16 16 C 1.38330 * 120.28620 * 180.02562 * 15 14 13 17 17 C 1.37995 * 120.14122 * 359.70438 * 16 15 14 18 18 C 1.39525 * 119.85329 * 0.52770 * 17 16 15 19 19 C 1.43197 * 120.13546 * 179.77051 * 18 17 16 20 20 C 7.19559 * 132.99426 * 64.53964 * 2 1 3 21 21 C 8.56542 * 136.50375 * 62.03682 * 2 1 3 22 22 N 1.46900 * 109.46959 * 16.91302 * 21 20 19 23 23 C 1.37952 * 119.92743 * 90.00700 * 14 13 3 24 24 H 1.08998 * 109.47573 * 302.78214 * 1 2 3 25 25 H 1.09003 * 109.47309 * 62.78043 * 1 2 3 26 26 H 1.09000 * 109.47307 * 182.77950 * 1 2 3 27 27 H 1.08992 * 109.47301 * 239.99963 * 2 1 3 28 28 H 1.08997 * 109.47344 * 119.99293 * 2 1 3 29 29 H 1.09003 * 109.46597 * 48.68324 * 4 3 2 30 30 H 1.08998 * 109.47168 * 168.68633 * 4 3 2 31 31 H 0.97003 * 120.00147 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.46981 * 306.05345 * 13 3 2 33 33 H 1.08995 * 109.47499 * 186.04870 * 13 3 2 34 34 H 1.08000 * 119.85646 * 0.02562 * 15 14 13 35 35 H 1.07999 * 119.92570 * 179.97438 * 16 15 14 36 36 H 1.07994 * 120.07373 * 180.28009 * 17 16 15 37 37 H 1.09000 * 109.46944 * 256.91351 * 21 20 19 38 38 H 1.09000 * 109.47064 * 136.91054 * 21 20 19 39 39 H 1.00900 * 111.00010 * 180.02562 * 22 21 20 40 40 H 1.00905 * 110.99917 * 303.95462 * 22 21 20 41 41 H 1.08005 * 120.07330 * 0.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5746 2.1008 -1.2032 5 6 2.3201 1.5773 -2.4037 6 1 3.0484 0.7887 -2.2854 7 6 2.0725 2.1053 -3.6530 8 7 2.7227 1.6482 -4.7007 9 14 0.8123 3.4688 -3.8578 10 1 1.4798 4.7867 -3.7064 11 1 0.1982 3.3769 -5.2068 12 1 -0.2433 3.3268 -2.8229 13 6 1.6007 2.0916 1.2180 14 6 2.2756 1.4727 2.4149 15 6 1.6661 0.4286 3.0879 16 6 2.2787 -0.1446 4.1878 17 6 3.5058 0.3183 4.6170 18 6 4.1234 1.3740 3.9456 19 6 5.3945 1.8623 4.3888 20 6 6.4368 2.2625 4.7519 21 6 7.7435 2.7645 5.2073 22 7 8.7697 1.7392 4.9757 23 6 3.4999 1.9481 2.8370 24 1 -0.3634 0.5564 0.8640 25 1 -0.3634 0.4701 -0.9139 26 1 -0.3634 -1.0264 0.0498 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 0.5049 1.9452 -1.3436 30 1 1.7747 3.1659 -1.0872 31 1 2.5488 2.0198 -5.5797 32 1 0.5193 2.0131 1.3298 33 1 1.8832 3.1417 1.1442 34 1 0.7079 0.0596 2.7530 35 1 1.7975 -0.9590 4.7090 36 1 3.9852 -0.1330 5.4730 37 1 7.6934 2.9945 6.2716 38 1 7.9996 3.6669 4.6521 39 1 9.6765 2.0598 5.2807 40 1 8.5224 0.8716 5.4275 41 1 3.9746 2.7632 2.3109 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042451126.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:02 Heat of formation + Delta-G solvation = 57.444251 kcal Electronic energy + Delta-G solvation = -19777.219828 eV Core-core repulsion = 16850.267169 eV Total energy + Delta-G solvation = -2926.952658 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.158 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.64643 -38.64378 -36.56911 -34.82834 -34.06324 -32.78460 -31.39249 -30.97656 -29.24083 -26.49028 -26.29893 -24.67244 -23.68461 -22.62176 -20.88833 -18.95505 -18.53669 -17.43859 -16.96866 -16.83856 -16.65953 -16.19062 -15.87183 -15.76631 -15.35516 -14.75442 -14.60710 -14.50380 -14.34416 -13.91646 -13.80024 -13.47691 -13.30274 -12.95149 -12.80412 -12.58234 -12.42951 -12.11413 -12.01809 -11.85078 -11.80109 -11.49615 -11.45168 -11.09033 -10.75942 -9.79459 -9.75643 -9.35596 -8.88170 -8.26362 -6.28887 -0.04440 0.43354 1.34848 1.36191 1.46696 1.56312 1.87745 2.35156 2.87742 3.06969 3.10297 3.46771 3.85170 3.86365 3.98413 4.14816 4.22847 4.28294 4.33186 4.44631 4.47293 4.48615 4.58673 4.67203 4.70227 4.72789 4.80891 4.95193 5.07628 5.09912 5.11563 5.26570 5.41948 5.50101 5.50982 5.57141 5.68251 5.98608 6.03798 6.07777 6.43214 6.48921 6.57451 6.68175 6.77191 7.34017 8.90800 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.017099 B = 0.004031 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.131723 B = 6945.245385 C = 8017.243759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.059 3.941 3 N -0.541 5.541 4 C 0.168 3.832 5 C -0.510 4.510 6 H 0.031 0.969 7 C 0.005 3.995 8 N -0.951 5.951 9 Si 0.947 3.053 10 H -0.267 1.267 11 H -0.282 1.282 12 H -0.247 1.247 13 C 0.086 3.914 14 C -0.074 4.074 15 C -0.105 4.105 16 C -0.112 4.112 17 C -0.101 4.101 18 C -0.007 4.007 19 C -0.159 4.159 20 C -0.166 4.166 21 C 0.176 3.824 22 N -0.861 5.861 23 C -0.093 4.093 24 H 0.070 0.930 25 H 0.040 0.960 26 H 0.075 0.925 27 H 0.045 0.955 28 H 0.080 0.920 29 H 0.005 0.995 30 H 0.022 0.978 31 H 0.266 0.734 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.140 0.860 35 H 0.160 0.840 36 H 0.142 0.858 37 H 0.080 0.920 38 H 0.105 0.895 39 H 0.365 0.635 40 H 0.349 0.651 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.616 -0.212 24.484 24.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.069 4.069 3 N -0.265 5.265 4 C 0.042 3.958 5 C -0.549 4.549 6 H 0.049 0.951 7 C -0.191 4.191 8 N -0.592 5.592 9 Si 0.770 3.230 10 H -0.192 1.192 11 H -0.208 1.208 12 H -0.170 1.170 13 C -0.042 4.042 14 C -0.075 4.075 15 C -0.123 4.123 16 C -0.130 4.130 17 C -0.119 4.119 18 C -0.007 4.007 19 C -0.161 4.161 20 C -0.166 4.166 21 C 0.047 3.953 22 N -0.394 5.394 23 C -0.111 4.111 24 H 0.089 0.911 25 H 0.059 0.941 26 H 0.094 0.906 27 H 0.064 0.936 28 H 0.098 0.902 29 H 0.023 0.977 30 H 0.041 0.959 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.158 0.842 35 H 0.178 0.822 36 H 0.160 0.840 37 H 0.098 0.902 38 H 0.123 0.877 39 H 0.181 0.819 40 H 0.162 0.838 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.994 -0.095 23.522 23.544 hybrid contribution -0.774 0.602 -0.022 0.981 sum 0.220 0.506 23.500 23.507 Atomic orbital electron populations 1.22323 0.97249 1.02896 1.01539 1.21987 0.93732 0.89952 1.01238 1.62047 1.60355 1.02819 1.01241 1.20003 0.94043 0.93724 0.88073 1.21245 1.22012 1.19987 0.91644 0.95054 1.25857 0.98373 0.99583 0.95313 1.70062 1.44326 1.44920 0.99888 0.85716 0.79810 0.79361 0.78063 1.19246 1.20805 1.17040 1.21133 0.97729 0.97603 0.87688 1.19719 0.94756 0.97159 0.95850 1.21447 1.00773 0.94814 0.95280 1.21364 0.94705 1.00416 0.96491 1.21402 0.95639 0.95030 0.99853 1.16059 0.90070 0.97955 0.96659 1.19674 0.94322 1.00200 1.01882 1.22892 0.95084 0.99550 0.99096 1.18836 0.81842 0.94765 0.99845 1.58564 1.05507 1.06850 1.68491 1.21084 0.94768 1.00105 0.95193 0.91142 0.94131 0.90594 0.93649 0.90167 0.97703 0.95947 0.92531 0.92392 0.90921 0.84175 0.82202 0.83998 0.90211 0.87705 0.81945 0.83764 0.87151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.67 9.12 71.98 0.66 -5.01 16 2 C 0.06 2.22 5.55 86.30 0.48 2.70 16 3 N -0.54 -22.70 4.65 -905.37 -4.21 -26.91 16 4 C 0.17 8.12 3.64 85.56 0.31 8.43 16 5 C -0.51 -30.23 9.12 25.60 0.23 -30.00 16 6 H 0.03 2.10 7.70 -2.91 -0.02 2.08 16 7 C 0.01 0.32 5.47 84.65 0.46 0.79 16 8 N -0.95 -60.76 13.96 21.45 0.30 -60.46 16 9 Si 0.95 44.54 27.46 68.60 1.88 46.42 16 10 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 12 H -0.25 -10.67 6.55 99.48 0.65 -10.02 16 13 C 0.09 2.84 4.91 85.56 0.42 3.26 16 14 C -0.07 -2.22 4.88 -19.90 -0.10 -2.32 16 15 C -0.10 -2.51 7.91 22.32 0.18 -2.33 16 16 C -0.11 -2.28 10.03 22.23 0.22 -2.05 16 17 C -0.10 -2.33 9.75 22.52 0.22 -2.11 16 18 C -0.01 -0.21 5.72 -21.41 -0.12 -0.34 16 19 C -0.16 -4.62 13.24 30.01 0.40 -4.22 16 20 C -0.17 -4.15 13.60 31.13 0.42 -3.73 16 21 C 0.18 2.83 7.26 84.50 0.61 3.45 16 22 N -0.86 -13.12 9.60 -194.72 -1.87 -14.99 16 23 C -0.09 -2.94 9.40 22.52 0.21 -2.73 16 24 H 0.07 1.86 5.59 -2.39 -0.01 1.84 16 25 H 0.04 1.46 6.35 -2.39 -0.02 1.45 16 26 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.04 2.04 7.20 -2.39 -0.02 2.02 16 28 H 0.08 2.67 5.97 -2.39 -0.01 2.65 16 29 H 0.01 0.25 4.96 -2.39 -0.01 0.24 16 30 H 0.02 1.07 7.24 -2.39 -0.02 1.05 16 31 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 32 H 0.06 1.71 5.97 -2.39 -0.01 1.69 16 33 H 0.07 2.43 7.81 -2.39 -0.02 2.41 16 34 H 0.14 2.83 7.22 -2.91 -0.02 2.81 16 35 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 36 H 0.14 2.58 8.06 -2.91 -0.02 2.55 16 37 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.36 3.38 9.08 -89.69 -0.81 2.56 16 40 H 0.35 4.81 8.97 -89.69 -0.80 4.01 16 41 H 0.11 3.71 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -73.48 337.01 0.09 -73.39 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -0.62 Total: 18.75 kcal Atomic # 6 Polarization: -40.82 SS G_CDS: 4.61 Total: -36.21 kcal Atomic # 7 Polarization: -96.57 SS G_CDS: -5.78 Total: -102.36 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.88 Total: 46.42 kcal Total: -73.48 0.09 -73.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042451126.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.835 kcal (2) G-P(sol) polarization free energy of solvation -73.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds