Wall clock time and date at job start Mon Mar 30 2020 05:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08998 * 109.47341 * 2 1 4 4 C 1.50699 * 109.47274 * 120.00417 * 2 1 3 5 5 H 1.08001 * 120.00187 * 119.99612 * 4 2 1 6 6 C 1.37881 * 120.00187 * 299.99795 * 4 2 1 7 7 N 1.31509 * 119.99528 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00150 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46967 * 59.99964 * 8 6 4 10 10 H 1.48498 * 109.47156 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47201 * 300.00097 * 8 6 4 12 12 N 1.46905 * 109.47168 * 240.00419 * 2 1 3 13 13 C 1.46897 * 111.00106 * 183.95472 * 12 2 1 14 14 C 1.46897 * 111.00047 * 59.99790 * 12 2 1 15 15 C 1.50699 * 109.47321 * 190.00145 * 14 12 2 16 16 C 1.38368 * 119.92919 * 269.98140 * 15 14 12 17 17 C 1.38318 * 120.28333 * 180.02562 * 16 15 14 18 18 C 1.37994 * 120.14532 * 359.69572 * 17 16 15 19 19 C 1.39513 * 119.85328 * 0.57858 * 18 17 16 20 20 C 1.43203 * 120.14228 * 179.72355 * 19 18 17 21 21 C 7.68963 * 74.66979 * 233.67986 * 2 1 3 22 22 C 8.92137 * 70.28408 * 230.06453 * 2 1 3 23 23 N 1.46906 * 109.47076 * 153.54466 * 22 21 20 24 24 C 1.37955 * 119.92866 * 90.00301 * 15 14 12 25 25 H 1.09000 * 109.47393 * 59.99719 * 1 2 3 26 26 H 1.08998 * 109.47341 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46853 * 299.99592 * 1 2 3 28 28 H 0.97004 * 120.00002 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.47246 * 296.04313 * 13 12 2 30 30 H 1.08994 * 109.47345 * 56.04654 * 13 12 2 31 31 H 1.09006 * 109.46964 * 176.04343 * 13 12 2 32 32 H 1.09006 * 109.47069 * 70.00214 * 14 12 2 33 33 H 1.08998 * 109.47265 * 310.00586 * 14 12 2 34 34 H 1.07994 * 119.85616 * 359.97438 * 16 15 14 35 35 H 1.08002 * 119.92562 * 179.97438 * 17 16 15 36 36 H 1.08005 * 120.07241 * 180.28340 * 18 17 16 37 37 H 1.08992 * 109.46866 * 33.54239 * 22 21 20 38 38 H 1.09004 * 109.47173 * 273.54369 * 22 21 20 39 39 H 1.00897 * 110.99706 * 179.97438 * 23 22 21 40 40 H 1.00899 * 110.99484 * 303.95694 * 23 22 21 41 41 H 1.08003 * 120.07063 * 0.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9428 0.8294 2.6034 8 14 2.3214 -1.1206 4.0079 9 1 3.8064 -1.1212 4.0080 10 1 1.8260 -0.4210 5.2204 11 1 1.8258 -2.5205 4.0076 12 7 2.0196 -0.6924 -1.1995 13 6 3.4850 -0.7945 -1.1871 14 6 1.5486 -0.0263 -2.4211 15 6 1.8578 -0.8909 -3.6160 16 6 3.0635 -0.7463 -4.2792 17 6 3.3548 -1.5357 -5.3771 18 6 2.4459 -2.4776 -5.8140 19 6 1.2260 -2.6244 -5.1532 20 6 0.2758 -3.5959 -5.6050 21 6 -0.5031 -4.3925 -5.9752 22 6 -1.4798 -5.3911 -6.4396 23 7 -0.7821 -6.4512 -7.1796 24 6 0.9380 -1.8246 -4.0465 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.7082 1.1606 3.4845 29 1 3.9192 0.2044 -1.2301 30 1 3.8069 -1.2915 -0.2721 31 1 3.8163 -1.3721 -2.0502 32 1 2.0518 0.9347 -2.5280 33 1 0.4722 0.1326 -2.3564 34 1 3.7799 -0.0134 -3.9388 35 1 4.2975 -1.4176 -5.8907 36 1 2.6764 -3.0965 -6.6686 37 1 -2.2079 -4.9106 -7.0930 38 1 -1.9925 -5.8245 -5.5809 39 1 -1.4314 -7.1498 -7.5088 40 1 -0.2463 -6.0665 -7.9432 41 1 -0.0030 -1.9360 -3.5284 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063088483.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:01 Heat of formation + Delta-G solvation = 79.391899 kcal Electronic energy + Delta-G solvation = -19769.492231 eV Core-core repulsion = 16843.491294 eV Total energy + Delta-G solvation = -2926.000937 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.37287 -36.85945 -35.77288 -33.44665 -32.69517 -31.19715 -30.10776 -28.97377 -26.82887 -25.68717 -24.65957 -23.36350 -22.60074 -21.19252 -19.39426 -17.69970 -16.59819 -16.20911 -15.78432 -15.46930 -15.20502 -14.95584 -14.50880 -14.06570 -13.91904 -13.60727 -13.45990 -13.06343 -12.67653 -12.42959 -12.35150 -11.80693 -11.33556 -11.28994 -11.02876 -10.95785 -10.83486 -10.68569 -10.45358 -10.19920 -10.12477 -10.00746 -9.79661 -9.17567 -8.91058 -8.62387 -8.40390 -8.24950 -7.16784 -6.00568 -4.04980 1.04798 1.55246 2.52681 2.96455 3.33231 3.37314 3.40742 3.94642 4.08178 4.42615 4.46258 5.00803 5.03168 5.09404 5.17464 5.21705 5.29454 5.34156 5.39148 5.55836 5.68451 5.90833 6.05125 6.20188 6.21984 6.29286 6.40672 6.53288 6.58055 6.64457 6.78342 6.83013 6.88710 7.01695 7.04858 7.10010 7.15709 7.51513 7.53303 7.72093 7.83433 8.20557 8.32427 8.59720 9.01202 9.59912 11.06237 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.019533 B = 0.003687 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.162313 B = 7592.142740 C = 8299.778609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.212 3.788 3 H -0.001 1.001 4 C -0.504 4.504 5 H 0.063 0.937 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.276 1.276 12 N -0.531 5.531 13 C 0.034 3.966 14 C 0.083 3.917 15 C -0.058 4.058 16 C -0.104 4.104 17 C -0.122 4.122 18 C -0.104 4.104 19 C 0.004 3.996 20 C -0.110 4.110 21 C -0.179 4.179 22 C 0.180 3.820 23 N -0.848 5.848 24 C -0.073 4.073 25 H 0.008 0.992 26 H 0.035 0.965 27 H 0.086 0.914 28 H 0.261 0.739 29 H 0.010 0.990 30 H 0.077 0.923 31 H 0.046 0.954 32 H 0.032 0.968 33 H 0.084 0.916 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.052 0.948 38 H 0.097 0.903 39 H 0.349 0.651 40 H 0.345 0.655 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.083 -6.454 -18.594 19.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.107 3.893 3 H 0.016 0.984 4 C -0.542 4.542 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.255 5.255 13 C -0.114 4.114 14 C -0.045 4.045 15 C -0.058 4.058 16 C -0.122 4.122 17 C -0.140 4.140 18 C -0.123 4.123 19 C 0.004 3.996 20 C -0.111 4.111 21 C -0.180 4.180 22 C 0.051 3.949 23 N -0.379 5.379 24 C -0.092 4.092 25 H 0.027 0.973 26 H 0.054 0.946 27 H 0.104 0.896 28 H 0.071 0.929 29 H 0.028 0.972 30 H 0.095 0.905 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.102 0.898 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.070 0.930 38 H 0.115 0.885 39 H 0.162 0.838 40 H 0.158 0.842 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.005 -6.949 -17.726 19.065 hybrid contribution 0.084 0.679 0.100 0.692 sum -0.922 -6.269 -17.625 18.730 Atomic orbital electron populations 1.21871 0.97757 0.99715 0.99895 1.19258 0.92325 0.91998 0.85752 0.98390 1.21122 1.31089 1.12296 0.89718 0.91862 1.24926 0.95204 0.95076 0.99002 1.69880 1.36879 1.23058 1.23518 0.86577 0.79077 0.79802 0.82058 1.20339 1.21371 1.20192 1.62164 1.09499 1.52429 1.01453 1.22291 0.88686 0.98699 1.01773 1.21155 1.01555 0.93241 0.88551 1.19928 0.93525 0.96464 0.95899 1.21225 0.96424 0.99403 0.95168 1.20967 0.99293 0.96438 0.97342 1.21041 0.92823 0.98602 0.99784 1.15873 0.92108 0.94854 0.96779 1.19304 0.95652 0.96590 0.99564 1.21922 0.98172 0.97036 1.00858 1.18591 0.90528 0.87795 0.98021 1.58601 1.30743 1.15761 1.32751 1.21085 0.99938 0.93951 0.94214 0.97275 0.94618 0.89585 0.92934 0.97194 0.90462 0.93491 0.94968 0.89757 0.86029 0.85879 0.86205 0.93009 0.88498 0.83795 0.84243 0.85535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 8.76 37.15 0.33 -2.96 16 2 C 0.21 5.38 2.06 -68.87 -0.14 5.23 16 3 H 0.00 -0.04 8.14 -51.93 -0.42 -0.46 16 4 C -0.50 -13.85 7.88 -34.44 -0.27 -14.12 16 5 H 0.06 1.74 6.41 -52.49 -0.34 1.40 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -25.51 11.32 55.43 0.63 -24.88 16 8 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 12 N -0.53 -11.56 4.61 -237.74 -1.10 -12.66 16 13 C 0.03 0.68 8.86 60.06 0.53 1.21 16 14 C 0.08 1.52 4.93 -4.98 -0.02 1.50 16 15 C -0.06 -0.93 4.88 -104.68 -0.51 -1.44 16 16 C -0.10 -1.47 7.96 -39.50 -0.31 -1.78 16 17 C -0.12 -1.52 10.03 -39.64 -0.40 -1.92 16 18 C -0.10 -1.37 9.75 -39.20 -0.38 -1.75 16 19 C 0.00 0.06 5.72 -107.00 -0.61 -0.55 16 20 C -0.11 -1.61 13.24 -38.84 -0.51 -2.13 16 21 C -0.18 -2.33 13.60 -37.12 -0.50 -2.83 16 22 C 0.18 1.61 7.26 -6.61 -0.05 1.56 16 23 N -0.85 -6.72 9.60 -12.90 -0.12 -6.85 16 24 C -0.07 -1.18 9.40 -39.20 -0.37 -1.54 16 25 H 0.01 0.18 6.20 -51.93 -0.32 -0.14 16 26 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.09 2.30 6.07 -51.93 -0.32 1.98 16 28 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.08 1.67 6.10 -51.93 -0.32 1.35 16 31 H 0.05 0.84 6.17 -51.93 -0.32 0.52 16 32 H 0.03 0.58 8.06 -51.93 -0.42 0.16 16 33 H 0.08 1.56 5.77 -51.93 -0.30 1.26 16 34 H 0.12 1.58 8.03 -52.49 -0.42 1.16 16 35 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 36 H 0.12 1.33 8.06 -52.48 -0.42 0.90 16 37 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.35 1.79 9.08 -39.29 -0.36 1.43 16 40 H 0.34 2.45 8.97 -39.29 -0.35 2.09 16 41 H 0.13 2.03 8.06 -52.48 -0.42 1.61 16 LS Contribution 340.07 15.07 5.12 5.12 Total: -1.00 -30.45 340.07 -9.79 -40.24 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -5.98 Total: 2.58 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: -3.33 Total: -19.98 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: -0.59 Total: -44.39 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.45 -9.79 -40.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063088483.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.633 kcal (2) G-P(sol) polarization free energy of solvation -30.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds